Rmu_sc0001287.1_g000002

nucleic acid binding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001287.1
OG0018194
Physical Location & Seq
Reverse (-)
1654 .. 5703
4050 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001287.1_g000002.1.cds

Sequence Viewer

Length: 1119 bp
atgcggacactgtttgtaactcagctgcatgcaagtgtgagcgagaacaggctcaaatcggtatttgagaaatatggtcccgttaaaaggacgaaaattattccttacccgtggaagaagaattgtgcttttgtggagtttgagcgggagagtgatactcaagatgcgttggtggatatgcgtttcaaattcttcccagacaaatggcaatggaaagtgtgctatgctcactcggatgatcctggaaagagtgttgtagaagagaatgttgaagaagttgattggcaactagtgcctcaatcgtcatctgactcaagaaaggctcttgaagaagatcattcctcatcgtattctggtactcactattttttcattgttactaatgtatctacctggtacatttcatcagttttgttaacagttcctttgattcggctttactgtgtttttgaaacaggggtcacaactcttgctccctcatcatcttttggtatgctagcatttgaatatgtttctgtgctgcatgcaagtgtgagcgagaagaggctcaaatcggtatttgagaaatatggtcccgttaaaaggacgaaaattattccttacccgtggaagaagaattgtgcttttgtggagtttgagcgggagagtgatactcaagatgcgttggtggatatgcgtttcaaattcttcccagacaaatggcaatggaaagtgtgctatgctcactcggatgatcctggaaagagtgttgtagaagagaatgttgaagaagttgattggcaactagtgcctcaatcgtcatctgactcaagaaaggctcttgaagaagatcattcctcatcgtattctggggtcacaactcttgctccctcatcatcttttggtatgctagcatttgaatatgtttctgtggctgagcagagcaattactgggaagttctgagaaagcacggttcgctaaagcgtatctttagcttcgctaggttgcgagggcgttacccttgcttcgctgctagtgtttgtggcagtaacactgacagtcggctcggagagactaggactgagagtacggtcgccgggtttcaacagggtagaaggtttgctctggggattgattga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000323 GO:0000375 GO:0000377 GO:0000381 GO:0000398 GO:0001817 GO:0001818 GO:0002119 GO:0002164 GO:0003006 GO:0003674 GO:0003676 GO:0003723 GO:0003727 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005685 GO:0005737 GO:0005764 GO:0005773 GO:0005829 GO:0006139 GO:0006355 GO:0006357 GO:0006396 GO:0006397 GO:0006417 GO:0006725 GO:0006807 GO:0006915 GO:0006950 GO:0006952 GO:0006970 GO:0006972 GO:0006979 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007169 GO:0007275 GO:0007276 GO:0007281 GO:0007568 GO:0008104 GO:0008143 GO:0008150 GO:0008152 GO:0008219 GO:0008284 GO:0008340 GO:0008380 GO:0008543 GO:0009266 GO:0009314 GO:0009408 GO:0009411 GO:0009416 GO:0009628 GO:0009719 GO:0009791 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010033 GO:0010259 GO:0010467 GO:0010468 GO:0010494 GO:0010556 GO:0010558 GO:0010605 GO:0010608 GO:0010629 GO:0010941 GO:0010942 GO:0012501 GO:0016070 GO:0016071 GO:0017091 GO:0017145 GO:0017148 GO:0019219 GO:0019222 GO:0019953 GO:0022412 GO:0022414 GO:0023052 GO:0030154 GO:0030532 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031974 GO:0031981 GO:0032268 GO:0032269 GO:0032501 GO:0032502 GO:0032504 GO:0032991 GO:0033036 GO:0033365 GO:0034248 GO:0034249 GO:0034613 GO:0034641 GO:0035770 GO:0036464 GO:0040012 GO:0042035 GO:0042036 GO:0042127 GO:0042221 GO:0042981 GO:0043065 GO:0043067 GO:0043068 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043484 GO:0044237 GO:0044238 GO:0044344 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0044703 GO:0046483 GO:0048024 GO:0048468 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048609 GO:0048856 GO:0048869 GO:0050684 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051179 GO:0051239 GO:0051241 GO:0051246 GO:0051248 GO:0051252 GO:0051301 GO:0051641 GO:0051704 GO:0051716 GO:0060255 GO:0065007 GO:0070013 GO:0070717 GO:0070727 GO:0070848 GO:0070887 GO:0071310 GO:0071363 GO:0071495 GO:0071704 GO:0071774 GO:0080090 GO:0090304 GO:0097159 GO:0097165 GO:0097525 GO:0120114 GO:1901360 GO:1901363 GO:1903311 GO:1903506 GO:1903608 GO:1904035 GO:1904037 GO:1990904 GO:2000112 GO:2000113 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RRM_1

Protein Analysis

372

Amino Acids

42.68

Weight (kDa)

6.29

Isoelectric Point (pI)

37.73

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018194)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr5g0083151
rosa_laevigata RLG00000037044
rosa_multiflora Rmu_sc0001287.1_g000002 Rmu_sc0002184.1_g000018
rosa_roxburghii Rroxscaffold_1G00000900
rosa_rugosa Rorug05G0440000
rosa_samantha Rh5AG532300 Rh5BG563600 Rh5CG585700 Rh5DG571700
rosa_wichuraiana Rw5G050070

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 2 cut(s) 145, 640
AciI CCGC 3 cut(s) 4, 145, 640
AclWI GGATC 2 cut(s) 233, 728
AcsI RAATTY 2 cut(s) 188, 683
AfaI GTAC 3 cut(s) 358, 398, 1069
AfiI CCNNNNNNNGG 2 cut(s) 87, 582
AhlI ACTAGT 2 cut(s) 289, 784
AjnI CCWGG 3 cut(s) 241, 392, 736
AluBI AGCT 2 cut(s) 25, 975
AluI AGCT 2 cut(s) 25, 975
Alw26I GTCTC 1 cut(s) 1046
AlwI GGATC 2 cut(s) 233, 728
ApeKI GCWGC 3 cut(s) 25, 520, 1010
ApoI RAATTY 2 cut(s) 188, 683
AspS9I GGNCC 2 cut(s) 77, 572
AsuC2I CCSGG 1 cut(s) 1078
AsuNHI GCTAGC 2 cut(s) 496, 889
AvaII GGWCC 2 cut(s) 77, 572
BaeI ACNNNNGTAYC 2 cut(s) 369, 402
BbvI GCAGC 3 cut(s) 12, 507, 997
BciT130I CCWGG 3 cut(s) 243, 394, 738
BcnI CCSGG 1 cut(s) 1078
BcoDI GTCTC 1 cut(s) 1046
BcuI ACTAGT 2 cut(s) 289, 784
BfaI CTAG 7 cut(s) 290, 497, 785, 890, 981, 1014, 1056
BisI GCNGC 3 cut(s) 26, 521, 1011
BlpI GCTNAGC 1 cut(s) 915
BlsI GCNGC 3 cut(s) 27, 522, 1012
Bme1390I CCNGG 4 cut(s) 243, 394, 738, 1078
Bme18I GGWCC 2 cut(s) 77, 572
BmgT120I GGNCC 2 cut(s) 77, 572
BmiI GGNNCC 2 cut(s) 79, 574
BmrFI CCNGG 4 cut(s) 243, 394, 738, 1078
BmrI ACTGGG 1 cut(s) 940
BmsI GCATC 2 cut(s) 154, 649
BmtI GCTAGC 2 cut(s) 500, 893
BmuI ACTGGG 1 cut(s) 940
BplI GAGNNNNNCTC 4 cut(s) 142, 174, 637, 669
Bpu1102I GCTNAGC 1 cut(s) 915
BpuEI CTTGAG 4 cut(s) 144, 298, 639, 793
BpuMI CCSGG 1 cut(s) 1078
BsaJI CCNNGG 2 cut(s) 110, 605
BsaXI ACNNNNNCTCC 4 cut(s) 457, 487, 850, 880
Bsc4I CCNNNNNNNGG 2 cut(s) 87, 582
Bse1I ACTGG 1 cut(s) 935
Bse3DI GCAATG 2 cut(s) 215, 710
BseBI CCWGG 3 cut(s) 243, 394, 738
BseDI CCNNGG 2 cut(s) 110, 605
BseGI GGATG 2 cut(s) 241, 736
BseLI CCNNNNNNNGG 2 cut(s) 87, 582
BseMI GCAATG 2 cut(s) 215, 710
BseMII CTCAG 4 cut(s) 35, 906, 932, 1053
BseNI ACTGG 1 cut(s) 935
BseXI GCAGC 3 cut(s) 12, 507, 997
Bsh1285I CGRYCG 1 cut(s) 1074
BsiEI CGRYCG 1 cut(s) 1074
BsiSI CCGG 1 cut(s) 1077
BslFI GGGAC 2 cut(s) 63, 558
BslI CCNNNNNNNGG 2 cut(s) 87, 582
BsmAI GTCTC 1 cut(s) 1046
BsmFI GGGAC 2 cut(s) 63, 558
Bsp143I GATC 4 cut(s) 238, 334, 733, 829
Bsp1720I GCTNAGC 1 cut(s) 915
BspACI CCGC 3 cut(s) 4, 145, 640
BspCNI CTCAG 4 cut(s) 34, 907, 933, 1054
BspLI GGNNCC 2 cut(s) 79, 574
BspOI GCTAGC 2 cut(s) 500, 893
BspPI GGATC 2 cut(s) 233, 728
BsrBI CCGCTC 2 cut(s) 145, 640
BsrDI GCAATG 2 cut(s) 215, 710
BsrI ACTGG 1 cut(s) 935
BssECI CCNNGG 2 cut(s) 110, 605
BssMI GATC 4 cut(s) 238, 334, 733, 829
Bst2UI CCWGG 3 cut(s) 243, 394, 738
Bst4CI ACNGT 6 cut(s) 12, 421, 443, 953, 1040, 1072
Bst6I CTCTTC 3 cut(s) 255, 536, 750
BstAPI GCANNNNNTGC 2 cut(s) 292, 787
BstC8I GCNNGC 4 cut(s) 30, 498, 525, 891
BstDEI CTNAG 4 cut(s) 21, 915, 941, 1062
BstDSI CCRYGG 2 cut(s) 110, 605
BstF5I GGATG 2 cut(s) 241, 736
BstKTI GATC 4 cut(s) 241, 337, 736, 832
BstMAI GTCTC 1 cut(s) 1046
BstMBI GATC 4 cut(s) 238, 334, 733, 829
BstMCI CGRYCG 1 cut(s) 1074
BstMWI GCNNNNNNNGC 3 cut(s) 292, 787, 955
BstNI CCWGG 3 cut(s) 243, 394, 738
BstNSI RCATGY 2 cut(s) 32, 527
BstSCI CCNGG 4 cut(s) 241, 392, 736, 1076
BstV1I GCAGC 3 cut(s) 12, 507, 997
BstXI CCANNNNNNTGG 2 cut(s) 204, 699
BtgI CCRYGG 2 cut(s) 110, 605
BtsCI GGATG 2 cut(s) 241, 736
BtsIMutI CAGTG 2 cut(s) 8, 1032
Cac8I GCNNGC 4 cut(s) 30, 498, 525, 891
Cfr13I GGNCC 2 cut(s) 77, 572
CsiI ACCWGGT 1 cut(s) 392
Csp6I GTAC 3 cut(s) 357, 397, 1068
CviAII CATG 2 cut(s) 29, 524
CviJI RGCY 9 cut(s) 25, 52, 323, 436, 547, 818, 914, 975, 1045
CviKI_1 RGCY 9 cut(s) 25, 52, 323, 436, 547, 818, 914, 975, 1045
CviQI GTAC 3 cut(s) 357, 397, 1068
DdeI CTNAG 4 cut(s) 21, 915, 941, 1062
DpnI GATC 4 cut(s) 240, 336, 735, 831
DpnII GATC 4 cut(s) 238, 334, 733, 829
Eam1104I CTCTTC 3 cut(s) 255, 536, 750
EarI CTCTTC 3 cut(s) 255, 536, 750
Eco47I GGWCC 2 cut(s) 77, 572
EcoRII CCWGG 3 cut(s) 241, 392, 736
FaeI CATG 2 cut(s) 32, 527
FalI AAGNNNNNCTT 2 cut(s) 953, 985
FaqI GGGAC 2 cut(s) 63, 558
FatI CATG 2 cut(s) 28, 523
FauI CCCGC 2 cut(s) 138, 633
Fnu4HI GCNGC 3 cut(s) 26, 521, 1011
FokI GGATG 2 cut(s) 248, 743
Fsp4HI GCNGC 3 cut(s) 26, 521, 1011
FspBI CTAG 7 cut(s) 290, 497, 785, 890, 981, 1014, 1056
GluI GCNGC 3 cut(s) 26, 521, 1011
HapII CCGG 1 cut(s) 1077
Hin1II CATG 2 cut(s) 32, 527
HincII GTYRAC 1 cut(s) 417
HindII GTYRAC 1 cut(s) 417
HinfI GANTC 3 cut(s) 311, 430, 806
HpaI GTTAAC 1 cut(s) 417
HpaII CCGG 1 cut(s) 1077
Hpy166II GTNNAC 1 cut(s) 417
Hpy188I TCNGA 6 cut(s) 235, 310, 730, 805, 942, 1049
Hpy188III TCNNGA 6 cut(s) 161, 315, 326, 656, 810, 821
Hpy8I GTNNAC 1 cut(s) 417
HpyAV CCTTC 1 cut(s) 1089
HpyCH4III ACNGT 6 cut(s) 12, 421, 443, 953, 1040, 1072
HpyCH4V TGCA 4 cut(s) 28, 32, 523, 527
HpyF10VI GCNNNNNNNGC 3 cut(s) 292, 787, 955
HpyF3I CTNAG 4 cut(s) 21, 915, 941, 1062
Hsp92II CATG 2 cut(s) 32, 527
KspAI GTTAAC 1 cut(s) 417
Kzo9I GATC 4 cut(s) 238, 334, 733, 829
LmnI GCTCC 2 cut(s) 478, 871
Lsp1109I GCAGC 3 cut(s) 12, 507, 997
LweI GCATC 2 cut(s) 154, 649
MabI ACCWGGT 1 cut(s) 392
MaeI CTAG 7 cut(s) 290, 497, 785, 890, 981, 1014, 1056
MaeIII GTNAC 6 cut(s) 16, 376, 460, 853, 995, 1028
MalI GATC 4 cut(s) 240, 336, 735, 831
MbiI CCGCTC 2 cut(s) 145, 640
MboI GATC 4 cut(s) 238, 334, 733, 829
MluCI AATT 7 cut(s) 96, 121, 188, 591, 616, 683, 925
MlyI GAGTC 2 cut(s) 305, 800
MnlI CCTC 8 cut(s) 306, 352, 487, 537, 801, 847, 880, 983
MseI TTAA 3 cut(s) 84, 416, 579
MslI CAYNNNNRTG 4 cut(s) 33, 234, 528, 729
MspA1I CMGCKG 1 cut(s) 25
MspI CCGG 1 cut(s) 1077
MspR9I CCNGG 4 cut(s) 243, 394, 738, 1078
MvaI CCWGG 3 cut(s) 243, 394, 738
MwoI GCNNNNNNNGC 3 cut(s) 292, 787, 955
NciI CCSGG 1 cut(s) 1078
NdeII GATC 4 cut(s) 238, 334, 733, 829
NheI GCTAGC 2 cut(s) 496, 889
NlaIII CATG 2 cut(s) 32, 527
NlaIV GGNNCC 2 cut(s) 79, 574
NmuCI GTSAC 2 cut(s) 460, 853
NspI RCATGY 2 cut(s) 32, 527
PaeI GCATGC 2 cut(s) 32, 527
PfeI GAWTC 1 cut(s) 430
PfoI TCCNGGA 2 cut(s) 241, 736
PkrI GCNGC 3 cut(s) 27, 522, 1012
PleI GAGTC 2 cut(s) 305, 800
PpsI GAGTC 2 cut(s) 305, 800
Psp6I CCWGG 3 cut(s) 241, 392, 736
PspGI CCWGG 3 cut(s) 241, 392, 736
PspN4I GGNNCC 2 cut(s) 79, 574
PspPI GGNCC 2 cut(s) 77, 572
PvuII CAGCTG 1 cut(s) 25
RsaI GTAC 3 cut(s) 358, 398, 1069
RsaNI GTAC 3 cut(s) 357, 397, 1068
RseI CAYNNNNRTG 4 cut(s) 33, 234, 528, 729
SaqAI TTAA 3 cut(s) 84, 416, 579
SatI GCNGC 3 cut(s) 26, 521, 1011
Sau3AI GATC 4 cut(s) 238, 334, 733, 829
Sau96I GGNCC 2 cut(s) 77, 572
SchI GAGTC 2 cut(s) 305, 800
ScrFI CCNGG 4 cut(s) 243, 394, 738, 1078
SetI ASST 5 cut(s) 27, 395, 977, 986, 1100
SexAI ACCWGGT 1 cut(s) 392
SfaNI GCATC 2 cut(s) 154, 649
SinI GGWCC 2 cut(s) 77, 572
SmiMI CAYNNNNRTG 4 cut(s) 33, 234, 528, 729
SmlI CTYRAG 4 cut(s) 159, 313, 654, 808
SmoI CTYRAG 4 cut(s) 159, 313, 654, 808
SpeI ACTAGT 2 cut(s) 289, 784
SphI GCATGC 2 cut(s) 32, 527
Sse9I AATT 7 cut(s) 96, 121, 188, 591, 616, 683, 925
SsiI CCGC 3 cut(s) 4, 145, 640
SspMI CTAG 7 cut(s) 290, 497, 785, 890, 981, 1014, 1056
StyD4I CCNGG 4 cut(s) 241, 392, 736, 1076
TaaI ACNGT 6 cut(s) 12, 421, 443, 953, 1040, 1072
TasI AATT 7 cut(s) 96, 121, 188, 591, 616, 683, 925
TfiI GAWTC 1 cut(s) 430
Tru1I TTAA 3 cut(s) 84, 416, 579
Tru9I TTAA 3 cut(s) 84, 416, 579
TscAI CASTG 2 cut(s) 15, 1039
TseFI GTSAC 2 cut(s) 460, 853
TseI GCWGC 3 cut(s) 25, 520, 1010
Tsp45I GTSAC 2 cut(s) 460, 853
TspDTI ATGAA 2 cut(s) 361, 393
TspRI CASTG 2 cut(s) 15, 1039
VpaK11BI GGWCC 2 cut(s) 77, 572
XapI RAATTY 2 cut(s) 188, 683
XceI RCATGY 2 cut(s) 32, 527
XspI CTAG 7 cut(s) 290, 497, 785, 890, 981, 1014, 1056
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.