Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0017444

Physical Location & Seq

Genomic Coordinates Reverse (-)

7235352 .. 7236902

Gene Structure 1551 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ22593

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1068 bp

ATGGAGTGGGCTACGGCAATCCGTGATCTGCTTGCTAACAATGCAGGGCTGCCATATTCTGATTTGTCCGCGGTTGAGAATCAATTATCGTCTCTGGGATTATATCATTTTCAGCTTGGAATTTCCCAGTTTAGCTACAAGGATGGATCCAGCAAGACATTGATCGGGTTTTCTGGTTTGATTGAGTCTAGGAAAAAGCATAATTTGGCCATTGTAGGGTGGTTGACCCCTGATTTTCCGAGAGCACCTCCGGATATCTACCTGCTTGCCAAATATGATGAGGTGTTGGAAGCAAATCATCAGTGGGTTAGACCTTGTGGCAAGGTCGACATTCCTTACCTTCAGCAATGGAAAAATCACTCCATTTTATCCATCCTAATTGTTGAGCTAGTTGGTGCTTTTGGTTCATGGCCTCCCTTCATAAAGCGCCGCAACAATAAGTTGACTCCCTCTGTCTCCTCTACTAAGATACCCGAAGGAATCACTGATGAGCACCTCCGAAATGGCCTCAAGAACCTTATTTCTGATTTTCCCGAGTTGGGGGTTCATCTACGTAGCACTCCCATTCCTTTGATCAAGGGTTATATTCCCATTACCTATCATGGCAAGAATTACAAGGTCCAGATCCAAATACGGTTGGCCGGGTATCCACATCGAGCACCACAGGTTTATATTCTATGGGATCGAACCAAGTCTTGCATCAGAGAAGATTCACAATATGTGAGTTCGACTACTGGTCTAGTGCATATTCCACTTCTGCAAAATTGGTCTTTTCGTCTGGGCCTTGAGGACTACTGTACTTTGGTGGGACTGGTTTGGAATATGGTCGGCTTGTTTAGTCTTCACCCACCTGTGCGCTCAGGGATCTGTGTGCCTTCCAATTCGGGTACCACCAGTTATTCAAATGTGCCTTCCAATTCGGGTACCGCCAGTAATTCAAATGAGGAGAAGAGAGAGGAGGAGAATACAGAGGGTGCAGGGTCGGATTATGAGAGGCAACAAAAAGATTCTGAAAATGAACTAAAGATGTTTGAATCATCTGGGTGGAGAGGCTTCTTTGACGGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000813 GO:0000902 GO:0000904 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005769 GO:0005770 GO:0008150 GO:0009653 GO:0009888 GO:0009987 GO:0010008 GO:0010026 GO:0010090 GO:0010091 GO:0012505 GO:0016020 GO:0016043 GO:0030154 GO:0031090 GO:0031410 GO:0031982 GO:0032182 GO:0032502 GO:0032989 GO:0032991 GO:0036452 GO:0043130 GO:0043226 GO:0043227 GO:0043229 GO:0044422 GO:0044424 GO:0044425 GO:0044433 GO:0044440 GO:0044444 GO:0044446 GO:0044464 GO:0048468 GO:0048856 GO:0048869 GO:0051301 GO:0071840 GO:0090558 GO:0090626 GO:0097708 GO:0098588 GO:0098796 GO:0098805

KEGG Pathways

Metabolic & Signaling

ko04144 map04144

Pfam Domains

Protein Families

UEV Vps23_core

Protein Analysis

355

Amino Acids

39.9

Weight (kDa)

6.8

Isoelectric Point (pI)

41.67

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
UEV	PF05743	36 - 139	4.2e-13	UEV domain
UEV	PF05743	192 - 285	5.8e-11	UEV domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017444)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr6g0252011
rosa_laevigata	RLG00000015413 RLG00000015414
rosa_multiflora	Rmu_sc0002522.1_g000051 Rmu_ssc0000165.1_g000003
rosa_samantha	Rh6AG017000 Rh6AG017600 Rh6AG018200 Rh6AG018400 Rh6AG019100 Rh6BG014500 Rh6CG011500 Rh6DG012800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	270
Acc65I	GGTACC	2 cut(s)	887, 923
AccB1I	GGYRCC	2 cut(s)	887, 923
AccI	GTMKAC	1 cut(s)	327
AccII	CGCG	1 cut(s)	71
AccIII	TCCGGA	1 cut(s)	250
AciI	CCGC	4 cut(s)	69, 71, 430, 927
AclWI	GGATC	5 cut(s)	141, 154, 619, 690, 872
AcoI	YGGCCR	2 cut(s)	207, 639
AcsI	RAATTY	1 cut(s)	120
AcuI	CTGAAG	1 cut(s)	326
AfaI	GTAC	3 cut(s)	799, 889, 925
AfiI	CCNNNNNNNGG	3 cut(s)	216, 539, 540
AgsI	TTSAA	3 cut(s)	903, 939, 1034
AhdI	GACNNNNNGTC	1 cut(s)	735
AluBI	AGCT	3 cut(s)	115, 135, 388
AluI	AGCT	3 cut(s)	115, 135, 388
Alw21I	GWGCWC	3 cut(s)	247, 495, 661
Alw26I	GTCTC	2 cut(s)	96, 460
AlwI	GGATC	5 cut(s)	141, 154, 619, 690, 872
Ama87I	CYCGRG	1 cut(s)	533
Aor13HI	TCCGGA	1 cut(s)	250
AoxI	GGCC	5 cut(s)	207, 410, 505, 639, 781
ApeKI	GCWGC	1 cut(s)	49
ApoI	RAATTY	1 cut(s)	120
Asp718I	GGTACC	2 cut(s)	887, 923
AspLEI	GCGC	2 cut(s)	429, 858
AspS9I	GGNCC	2 cut(s)	619, 781
AsuC2I	CCSGG	1 cut(s)	643
AsuHPI	GGTGA	1 cut(s)	836
AvaI	CYCGRG	1 cut(s)	533
AvaII	GGWCC	1 cut(s)	619
BalI	TGGCCA	1 cut(s)	209
BamHI	GGATCC	1 cut(s)	146
BanI	GGYRCC	2 cut(s)	887, 923
BbsI	GAAGAC	1 cut(s)	833
Bbv12I	GWGCWC	3 cut(s)	247, 495, 661
BbvI	GCAGC	1 cut(s)	36
BccI	CCATC	2 cut(s)	137, 380
BceAI	ACGGC	1 cut(s)	30
BciVI	GTATCC	1 cut(s)	657
BclI	TGATCA	1 cut(s)	573
BcnI	CCSGG	1 cut(s)	643
BcoDI	GTCTC	2 cut(s)	96, 460
BfaI	CTAG	3 cut(s)	189, 389, 740
BfoI	RGCGCY	1 cut(s)	430
BfuAI	ACCTGC	1 cut(s)	270
BfuI	GTATCC	1 cut(s)	657
BisI	GCNGC	2 cut(s)	50, 430
BlsI	GCNGC	2 cut(s)	51, 431
Bme1390I	CCNGG	1 cut(s)	643
Bme18I	GGWCC	1 cut(s)	619
BmeRI	GACNNNNNGTC	1 cut(s)	735
BmeT110I	CYCGRG	1 cut(s)	533
BmgT120I	GGNCC	2 cut(s)	619, 781
BmiI	GGNNCC	3 cut(s)	148, 889, 925
BmrFI	CCNGG	1 cut(s)	643
BmrI	ACTGGG	1 cut(s)	121
BmsI	GCATC	1 cut(s)	708
BmuI	ACTGGG	1 cut(s)	121
BpiI	GAAGAC	1 cut(s)	833
BplI	GAGNNNNNCTC	2 cut(s)	232, 264
Bpu10I	CCTNAGC	1 cut(s)	859
BpuEI	CTTGAG	2 cut(s)	494, 806
BpuMI	CCSGG	1 cut(s)	643
BsaAI	YACGTR	1 cut(s)	554
BsaJI	CCNNGG	1 cut(s)	69
BsaWI	WCCGGW	1 cut(s)	250
Bsc4I	CCNNNNNNNGG	3 cut(s)	216, 539, 540
Bse1I	ACTGG	5 cut(s)	127, 739, 816, 894, 930
Bse3DI	GCAATG	1 cut(s)	353
BseAI	TCCGGA	1 cut(s)	250
BseDI	CCNNGG	1 cut(s)	69
BseGI	GGATG	2 cut(s)	148, 372
BseLI	CCNNNNNNNGG	3 cut(s)	216, 539, 540
BseMI	GCAATG	1 cut(s)	353
BseMII	CTCAG	1 cut(s)	873
BseNI	ACTGG	5 cut(s)	127, 739, 816, 894, 930
BseRI	GAGGAG	4 cut(s)	448, 959, 971, 974
BseXI	GCAGC	1 cut(s)	36
BsgI	GTGCAG	1 cut(s)	996
Bsh1236I	CGCG	1 cut(s)	71
BshFI	GGCC	5 cut(s)	209, 412, 507, 641, 783
BshNI	GGYRCC	2 cut(s)	887, 923
BsiHKAI	GWGCWC	3 cut(s)	247, 495, 661
BsiHKCI	CYCGRG	1 cut(s)	533
BsiSI	CCGG	2 cut(s)	251, 642
BslFI	GGGAC	1 cut(s)	822
BslI	CCNNNNNNNGG	3 cut(s)	216, 539, 540
BsmAI	GTCTC	2 cut(s)	96, 460
BsmBI	CGTCTC	1 cut(s)	96
BsmFI	GGGAC	1 cut(s)	822
BsnI	GGCC	5 cut(s)	209, 412, 507, 641, 783
BsoBI	CYCGRG	1 cut(s)	533
Bsp1286I	GDGCHC	3 cut(s)	247, 495, 661
Bsp13I	TCCGGA	1 cut(s)	250
Bsp143I	GATC	7 cut(s)	25, 146, 162, 573, 624, 682, 864
BspACI	CCGC	4 cut(s)	69, 71, 430, 927
BspANI	GGCC	5 cut(s)	209, 412, 507, 641, 783
BspCNI	CTCAG	1 cut(s)	872
BspEI	TCCGGA	1 cut(s)	250
BspFNI	CGCG	1 cut(s)	71
BspLI	GGNNCC	3 cut(s)	148, 889, 925
BspMI	ACCTGC	1 cut(s)	270
BspPI	GGATC	5 cut(s)	141, 154, 619, 690, 872
BspT107I	GGYRCC	2 cut(s)	887, 923
BsrDI	GCAATG	1 cut(s)	353
BsrI	ACTGG	5 cut(s)	127, 739, 816, 894, 930
BssECI	CCNNGG	1 cut(s)	69
BssMI	GATC	7 cut(s)	25, 146, 162, 573, 624, 682, 864
Bst4CI	ACNGT	3 cut(s)	636, 797, 1064
Bst6I	CTCTTC	1 cut(s)	944
BstBAI	YACGTR	1 cut(s)	554
BstC8I	GCNNGC	2 cut(s)	33, 267
BstDEI	CTNAG	2 cut(s)	465, 859
BstDSI	CCRYGG	1 cut(s)	69
BstF5I	GGATG	2 cut(s)	148, 372
BstFNI	CGCG	1 cut(s)	71
BstH2I	RGCGCY	1 cut(s)	430
BstHHI	GCGC	2 cut(s)	429, 858
BstKTI	GATC	7 cut(s)	28, 149, 165, 576, 627, 685, 867
BstMAI	GTCTC	2 cut(s)	96, 460
BstMBI	GATC	7 cut(s)	25, 146, 162, 573, 624, 682, 864
BstMWI	GCNNNNNNNGC	1 cut(s)	41
BstSCI	CCNGG	1 cut(s)	641
BstSNI	TACGTA	1 cut(s)	554
BstUI	CGCG	1 cut(s)	71
BstV1I	GCAGC	1 cut(s)	36
BstV2I	GAAGAC	1 cut(s)	833
BstX2I	RGATCY	3 cut(s)	146, 624, 864
BstYI	RGATCY	3 cut(s)	146, 624, 864
BsuI	GTATCC	1 cut(s)	657
BsuRI	GGCC	5 cut(s)	209, 412, 507, 641, 783
BtgI	CCRYGG	1 cut(s)	69
BtsCI	GGATG	2 cut(s)	148, 372
BtsIMutI	CAGTG	2 cut(s)	308, 483
BveI	ACCTGC	1 cut(s)	270
Cac8I	GCNNGC	2 cut(s)	33, 267
CfoI	GCGC	2 cut(s)	429, 858
Cfr13I	GGNCC	2 cut(s)	619, 781
Cfr42I	CCGCGG	1 cut(s)	72
Csp6I	GTAC	3 cut(s)	798, 888, 924
CviAII	CATG	2 cut(s)	408, 602
CviQI	GTAC	3 cut(s)	798, 888, 924
DdeI	CTNAG	2 cut(s)	465, 859
DpnI	GATC	7 cut(s)	27, 148, 164, 575, 626, 684, 866
DpnII	GATC	7 cut(s)	25, 146, 162, 573, 624, 682, 864
DriI	GACNNNNNGTC	1 cut(s)	735
EaeI	YGGCCR	2 cut(s)	207, 639
Eam1104I	CTCTTC	1 cut(s)	944
Eam1105I	GACNNNNNGTC	1 cut(s)	735
EarI	CTCTTC	1 cut(s)	944
Eco105I	TACGTA	1 cut(s)	554
Eco32I	GATATC	1 cut(s)	256
Eco47I	GGWCC	1 cut(s)	619
Eco57I	CTGAAG	1 cut(s)	326
Eco88I	CYCGRG	1 cut(s)	533
EcoRV	GATATC	1 cut(s)	256
Esp3I	CGTCTC	1 cut(s)	96
FaeI	CATG	2 cut(s)	411, 605
FaqI	GGGAC	1 cut(s)	822
FatI	CATG	2 cut(s)	407, 601
FbaI	TGATCA	1 cut(s)	573
FblI	GTMKAC	1 cut(s)	327
Fnu4HI	GCNGC	2 cut(s)	50, 430
FokI	GGATG	2 cut(s)	155, 359
Fsp4HI	GCNGC	2 cut(s)	50, 430
FspBI	CTAG	3 cut(s)	189, 389, 740
GlaI	GCGC	2 cut(s)	428, 857
GluI	GCNGC	2 cut(s)	50, 430
HaeII	RGCGCY	1 cut(s)	430
HaeIII	GGCC	5 cut(s)	209, 412, 507, 641, 783
HapII	CCGG	2 cut(s)	251, 642
HhaI	GCGC	2 cut(s)	429, 858
Hin1II	CATG	2 cut(s)	411, 605
Hin6I	GCGC	2 cut(s)	427, 856
HinP1I	GCGC	2 cut(s)	427, 856
HincII	GTYRAC	3 cut(s)	225, 328, 444
HindII	GTYRAC	3 cut(s)	225, 328, 444
HinfI	GANTC	7 cut(s)	79, 185, 445, 480, 710, 1007, 1034
HpaII	CCGG	2 cut(s)	251, 642
HphI	GGTGA	1 cut(s)	836
Hpy166II	GTNNAC	3 cut(s)	225, 328, 444
Hpy188I	TCNGA	7 cut(s)	61, 240, 500, 526, 704, 985, 1012
Hpy188III	TCNNGA	4 cut(s)	251, 511, 533, 622
Hpy8I	GTNNAC	3 cut(s)	225, 328, 444
HpyAV	CCTTC	5 cut(s)	350, 427, 470, 885, 921
HpyCH4III	ACNGT	3 cut(s)	636, 797, 1064
HpyCH4IV	ACGT	1 cut(s)	553
HpyCH4V	TGCA	5 cut(s)	44, 699, 745, 760, 977
HpyF10VI	GCNNNNNNNGC	1 cut(s)	41
HpyF3I	CTNAG	2 cut(s)	465, 859
HpySE526I	ACGT	1 cut(s)	553
Hsp92II	CATG	2 cut(s)	411, 605
HspAI	GCGC	2 cut(s)	427, 856
Kpn2I	TCCGGA	1 cut(s)	250
KpnI	GGTACC	2 cut(s)	891, 927
Ksp22I	TGATCA	1 cut(s)	573
KspI	CCGCGG	1 cut(s)	72
Kzo9I	GATC	7 cut(s)	25, 146, 162, 573, 624, 682, 864
Lsp1109I	GCAGC	1 cut(s)	36
LweI	GCATC	1 cut(s)	708
MaeI	CTAG	3 cut(s)	189, 389, 740
MaeII	ACGT	1 cut(s)	553
MalI	GATC	7 cut(s)	27, 148, 164, 575, 626, 684, 866
MboI	GATC	7 cut(s)	25, 146, 162, 573, 624, 682, 864
MboII	GAAGA	3 cut(s)	719, 833, 961
MflI	RGATCY	3 cut(s)	146, 624, 864
MhlI	GDGCHC	3 cut(s)	247, 495, 661
MlsI	TGGCCA	1 cut(s)	209
MluCI	AATT	9 cut(s)	83, 120, 202, 378, 610, 763, 880, 916, 934
MluNI	TGGCCA	1 cut(s)	209
MlyI	GAGTC	2 cut(s)	194, 439
MmeI	TCCRAC	2 cut(s)	267, 963
Mox20I	TGGCCA	1 cut(s)	209
MroI	TCCGGA	1 cut(s)	250
MscI	TGGCCA	1 cut(s)	209
MseI	TTAA	1 cut(s)	1066
MslI	CAYNNNNRTG	1 cut(s)	1042
Msp20I	TGGCCA	1 cut(s)	209
MspA1I	CMGCKG	1 cut(s)	71
MspI	CCGG	2 cut(s)	251, 642
MspR9I	CCNGG	1 cut(s)	643
MvnI	CGCG	1 cut(s)	71
MwoI	GCNNNNNNNGC	1 cut(s)	41
NciI	CCSGG	1 cut(s)	643
NdeII	GATC	7 cut(s)	25, 146, 162, 573, 624, 682, 864
NlaIII	CATG	2 cut(s)	411, 605
NlaIV	GGNNCC	3 cut(s)	148, 889, 925
PfeI	GAWTC	5 cut(s)	79, 480, 710, 1007, 1034
PkrI	GCNGC	2 cut(s)	51, 431
PleI	GAGTC	2 cut(s)	193, 439
PpsI	GAGTC	2 cut(s)	193, 439
Ppu21I	YACGTR	1 cut(s)	554
PspN4I	GGNNCC	3 cut(s)	148, 889, 925
PspPI	GGNCC	2 cut(s)	619, 781
PsuI	RGATCY	3 cut(s)	146, 624, 864
RsaI	GTAC	3 cut(s)	799, 889, 925
RsaNI	GTAC	3 cut(s)	798, 888, 924
RseI	CAYNNNNRTG	1 cut(s)	1042
SacII	CCGCGG	1 cut(s)	72
SalI	GTCGAC	1 cut(s)	326
SaqAI	TTAA	1 cut(s)	1066
SatI	GCNGC	2 cut(s)	50, 430
Sau3AI	GATC	7 cut(s)	25, 146, 162, 573, 624, 682, 864
Sau96I	GGNCC	2 cut(s)	619, 781
SchI	GAGTC	2 cut(s)	194, 439
ScrFI	CCNGG	1 cut(s)	643
SduI	GDGCHC	3 cut(s)	247, 495, 661
SfaNI	GCATC	1 cut(s)	708
Sfr303I	CCGCGG	1 cut(s)	72
SgrBI	CCGCGG	1 cut(s)	72
SinI	GGWCC	1 cut(s)	619
SmiMI	CAYNNNNRTG	1 cut(s)	1042
SmlI	CTYRAG	2 cut(s)	509, 785
SmoI	CTYRAG	2 cut(s)	509, 785
SnaBI	TACGTA	1 cut(s)	554
Sse9I	AATT	9 cut(s)	83, 120, 202, 378, 610, 763, 880, 916, 934
SsiI	CCGC	4 cut(s)	69, 71, 430, 927
SspMI	CTAG	3 cut(s)	189, 389, 740
StyD4I	CCNGG	1 cut(s)	641
TaaI	ACNGT	3 cut(s)	636, 797, 1064
TaiI	ACGT	1 cut(s)	556
TaqI	TCGA	4 cut(s)	327, 655, 685, 728
TasI	AATT	9 cut(s)	83, 120, 202, 378, 610, 763, 880, 916, 934
TatI	WGTACW	1 cut(s)	797
TauI	GCSGC	1 cut(s)	432
TfiI	GAWTC	5 cut(s)	79, 480, 710, 1007, 1034
Tru1I	TTAA	1 cut(s)	1066
Tru9I	TTAA	1 cut(s)	1066
TscAI	CASTG	2 cut(s)	308, 490
TseI	GCWGC	1 cut(s)	49
TspDTI	ATGAA	4 cut(s)	396, 409, 536, 1032
TspGWI	ACGGA	1 cut(s)	11
TspRI	CASTG	2 cut(s)	308, 490
VpaK11BI	GGWCC	1 cut(s)	619
XapI	RAATTY	1 cut(s)	120
XmiI	GTMKAC	1 cut(s)	327
XspI	CTAG	3 cut(s)	189, 389, 740

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.