E3 ubiquitin-protein ligase
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| Species | Orthologous Gene IDs |
|---|---|
| rosa_chinensis | RchiOBHm_Chr6g0252011 |
| rosa_laevigata | RLG00000015413 RLG00000015414 |
| rosa_multiflora | Rmu_sc0002522.1_g000051 Rmu_ssc0000165.1_g000003 |
| rosa_samantha | Rh6AG017000 Rh6AG017600 Rh6AG018200 Rh6AG018400 Rh6AG019100 Rh6BG014500 Rh6CG011500 Rh6DG012800 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AatII | GACGTC | 1 cut(s) | 2143 |
| Acc16I | TGCGCA | 1 cut(s) | 1390 |
| Acc36I | ACCTGC | 1 cut(s) | 1394 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 1078 |
| AccBSI | CCGCTC | 2 cut(s) | 1682, 2617 |
| AccI | GTMKAC | 5 cut(s) | 327, 1012, 1510, 2453, 2873 |
| AccII | CGCG | 2 cut(s) | 71, 3285 |
| AccIII | TCCGGA | 1 cut(s) | 250 |
| AcoI | YGGCCR | 3 cut(s) | 207, 651, 2512 |
| AcsI | RAATTY | 4 cut(s) | 120, 2059, 2170, 2532 |
| AcuI | CTGAAG | 7 cut(s) | 326, 998, 1104, 1718, 1828, 2256, 3198 |
| AcyI | GRCGYC | 2 cut(s) | 2140, 3316 |
| AfaI | GTAC | 6 cut(s) | 1348, 1458, 1841, 2053, 2769, 3168 |
| AfeI | AGCGCT | 1 cut(s) | 48 |
| AfiI | CCNNNNNNNGG | 7 cut(s) | 216, 1078, 2284, 2285, 3107, 3248, 3326 |
| AgsI | TTSAA | 9 cut(s) | 958, 1383, 1603, 1714, 2188, 2880, 2910, 3013, 3092 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 747 |
| AhlI | ACTAGT | 1 cut(s) | 1282 |
| AjnI | CCWGG | 2 cut(s) | 1723, 2278 |
| Alw21I | GWGCWC | 7 cut(s) | 247, 495, 572, 1027, 2668, 2978, 2984 |
| Alw26I | GTCTC | 7 cut(s) | 96, 460, 551, 2083, 2364, 3180, 3409 |
| Alw44I | GTGCAC | 1 cut(s) | 2664 |
| AlwNI | CAGNNNCTG | 3 cut(s) | 1700, 2279, 2855 |
| Ama87I | CYCGRG | 1 cut(s) | 533 |
| Aor13HI | TCCGGA | 1 cut(s) | 250 |
| Aor51HI | AGCGCT | 1 cut(s) | 48 |
| AoxI | GGCC | 7 cut(s) | 207, 410, 651, 2282, 2512, 3037, 3405 |
| ApaLI | GTGCAC | 1 cut(s) | 2664 |
| ApoI | RAATTY | 4 cut(s) | 120, 2059, 2170, 2532 |
| AseI | ATTAAT | 1 cut(s) | 161 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 2806 |
| AspLEI | GCGC | 4 cut(s) | 49, 429, 870, 1391 |
| AspS9I | GGNCC | 5 cut(s) | 631, 1619, 2282, 3038, 3304 |
| AsuC2I | CCSGG | 3 cut(s) | 655, 2112, 2286 |
| AsuHPI | GGTGA | 5 cut(s) | 104, 848, 2293, 2300, 2951 |
| AsuNHI | GCTAGC | 1 cut(s) | 3059 |
| AvaI | CYCGRG | 1 cut(s) | 533 |
| AvaII | GGWCC | 3 cut(s) | 631, 1619, 3304 |
| AxyI | CCTNAGG | 1 cut(s) | 1686 |
| BaeGI | GKGCMC | 1 cut(s) | 2668 |
| BalI | TGGCCA | 2 cut(s) | 209, 2514 |
| BamHI | GGATCC | 1 cut(s) | 146 |
| BanII | GRGCYC | 1 cut(s) | 2984 |
| BauI | CACGAG | 1 cut(s) | 2977 |
| BbsI | GAAGAC | 2 cut(s) | 845, 1721 |
| Bbv12I | GWGCWC | 7 cut(s) | 247, 495, 572, 1027, 2668, 2978, 2984 |
| BbvCI | CCTCAGC | 1 cut(s) | 3195 |
| BccI | CCATC | 8 cut(s) | 137, 380, 1135, 1589, 2159, 2413, 2438, 3404 |
| BceAI | ACGGC | 1 cut(s) | 1576 |
| BcgI | CGANNNNNNTGC | 4 cut(s) | 2464, 2498, 3365, 3399 |
| BciT130I | CCWGG | 2 cut(s) | 1725, 2280 |
| BciVI | GTATCC | 2 cut(s) | 669, 3193 |
| BclI | TGATCA | 1 cut(s) | 585 |
| BcnI | CCSGG | 3 cut(s) | 655, 2112, 2286 |
| BcoDI | GTCTC | 7 cut(s) | 96, 460, 551, 2083, 2364, 3180, 3409 |
| BcuI | ACTAGT | 1 cut(s) | 1282 |
| BfmI | CTRYAG | 3 cut(s) | 1488, 1851, 2847 |
| BfoI | RGCGCY | 2 cut(s) | 50, 430 |
| BfuAI | ACCTGC | 1 cut(s) | 1394 |
| BfuI | GTATCC | 2 cut(s) | 669, 3193 |
| Bme1390I | CCNGG | 5 cut(s) | 655, 1725, 2112, 2280, 2286 |
| Bme18I | GGWCC | 3 cut(s) | 631, 1619, 3304 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 747 |
| BmeT110I | CYCGRG | 1 cut(s) | 533 |
| BmgT120I | GGNCC | 5 cut(s) | 631, 1619, 2282, 3038, 3304 |
| BmiI | GGNNCC | 7 cut(s) | 148, 1579, 1678, 1941, 2621, 2958, 3305 |
| BmrFI | CCNGG | 5 cut(s) | 655, 1725, 2112, 2280, 2286 |
| BmrI | ACTGGG | 2 cut(s) | 16, 121 |
| BmsI | GCATC | 9 cut(s) | 720, 1114, 1174, 1250, 1307, 2837, 2932, 3254, 3440 |
| BmtI | GCTAGC | 1 cut(s) | 3063 |
| BmuI | ACTGGG | 2 cut(s) | 16, 121 |
| BpiI | GAAGAC | 2 cut(s) | 845, 1721 |
| BplI | GAGNNNNNCTC | 4 cut(s) | 232, 264, 3328, 3360 |
| BpmI | CTGGAG | 2 cut(s) | 1344, 2236 |
| Bpu10I | CCTNAGC | 4 cut(s) | 871, 1188, 2553, 3195 |
| BpuEI | CTTGAG | 3 cut(s) | 494, 818, 1280 |
| BpuMI | CCSGG | 3 cut(s) | 655, 2112, 2286 |
| BsaAI | YACGTR | 1 cut(s) | 554 |
| BsaHI | GRCGYC | 2 cut(s) | 2140, 3316 |
| BsaI | GGTCTC | 1 cut(s) | 2364 |
| BsaJI | CCNNGG | 7 cut(s) | 69, 115, 1276, 1995, 2278, 2279, 3283 |
| BsaWI | WCCGGW | 1 cut(s) | 250 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 1480, 1510 |
| Bsc4I | CCNNNNNNNGG | 7 cut(s) | 216, 1078, 2284, 2285, 3107, 3248, 3326 |
| Bse118I | RCCGGY | 1 cut(s) | 1904 |
| Bse1I | ACTGG | 8 cut(s) | 11, 127, 751, 828, 922, 1072, 1671, 2662 |
| Bse21I | CCTNAGG | 1 cut(s) | 1686 |
| Bse3DI | GCAATG | 3 cut(s) | 353, 576, 1244 |
| BseAI | TCCGGA | 1 cut(s) | 250 |
| BseBI | CCWGG | 2 cut(s) | 1725, 2280 |
| BseDI | CCNNGG | 7 cut(s) | 69, 115, 1276, 1995, 2278, 2279, 3283 |
| BseGI | GGATG | 6 cut(s) | 148, 372, 1298, 2449, 3436, 3442 |
| BseLI | CCNNNNNNNGG | 7 cut(s) | 216, 1078, 2284, 2285, 3107, 3248, 3326 |
| BseMI | GCAATG | 3 cut(s) | 353, 576, 1244 |
| BseNI | ACTGG | 8 cut(s) | 11, 127, 751, 828, 922, 1072, 1671, 2662 |
| BseRI | GAGGAG | 2 cut(s) | 448, 2665 |
| BseSI | GKGCMC | 1 cut(s) | 2668 |
| BseYI | CCCAGC | 1 cut(s) | 3263 |
| Bsh1236I | CGCG | 2 cut(s) | 71, 3285 |
| BshFI | GGCC | 7 cut(s) | 209, 412, 653, 2284, 2514, 3039, 3407 |
| BsiHKAI | GWGCWC | 7 cut(s) | 247, 495, 572, 1027, 2668, 2978, 2984 |
| BsiHKCI | CYCGRG | 1 cut(s) | 533 |
| BsiSI | CCGG | 6 cut(s) | 251, 654, 1372, 1905, 2111, 2285 |
| BslFI | GGGAC | 4 cut(s) | 834, 1136, 3125, 3317 |
| BslI | CCNNNNNNNGG | 7 cut(s) | 216, 1078, 2284, 2285, 3107, 3248, 3326 |
| BsmAI | GTCTC | 7 cut(s) | 96, 460, 551, 2083, 2364, 3180, 3409 |
| BsmBI | CGTCTC | 1 cut(s) | 96 |
| BsmFI | GGGAC | 4 cut(s) | 834, 1136, 3125, 3317 |
| BsmI | GAATGC | 3 cut(s) | 953, 1443, 3058 |
| BsnI | GGCC | 7 cut(s) | 209, 412, 653, 2284, 2514, 3039, 3407 |
| Bso31I | GGTCTC | 1 cut(s) | 2364 |
| BsoBI | CYCGRG | 1 cut(s) | 533 |
| Bsp1286I | GDGCHC | 7 cut(s) | 247, 495, 572, 1027, 2668, 2978, 2984 |
| Bsp13I | TCCGGA | 1 cut(s) | 250 |
| Bsp19I | CCATGG | 1 cut(s) | 1276 |
| BspANI | GGCC | 7 cut(s) | 209, 412, 653, 2284, 2514, 3039, 3407 |
| BspEI | TCCGGA | 1 cut(s) | 250 |
| BspFNI | CGCG | 2 cut(s) | 71, 3285 |
| BspHI | TCATGA | 1 cut(s) | 1180 |
| BspLI | GGNNCC | 7 cut(s) | 148, 1579, 1678, 1941, 2621, 2958, 3305 |
| BspMAI | CTGCAG | 1 cut(s) | 1855 |
| BspMI | ACCTGC | 1 cut(s) | 1394 |
| BspOI | GCTAGC | 1 cut(s) | 3063 |
| BspQI | GCTCTTC | 2 cut(s) | 2966, 3061 |
| BspTNI | GGTCTC | 1 cut(s) | 2364 |
| BsrBI | CCGCTC | 2 cut(s) | 1682, 2617 |
| BsrDI | GCAATG | 3 cut(s) | 353, 576, 1244 |
| BsrFI | RCCGGY | 1 cut(s) | 1904 |
| BsrI | ACTGG | 8 cut(s) | 11, 127, 751, 828, 922, 1072, 1671, 2662 |
| BssAI | RCCGGY | 1 cut(s) | 1904 |
| BssECI | CCNNGG | 7 cut(s) | 69, 115, 1276, 1995, 2278, 2279, 3283 |
| BssNI | GRCGYC | 2 cut(s) | 2140, 3316 |
| BssSI | CACGAG | 1 cut(s) | 2977 |
| BssT1I | CCWWGG | 3 cut(s) | 115, 1276, 1995 |
| Bst2BI | CACGAG | 1 cut(s) | 2977 |
| Bst2UI | CCWGG | 2 cut(s) | 1725, 2280 |
| Bst4CI | ACNGT | 7 cut(s) | 648, 809, 913, 1492, 2150, 2209, 2245 |
| Bst6I | CTCTTC | 5 cut(s) | 2086, 2385, 2966, 3061, 3148 |
| BstACI | GRCGYC | 2 cut(s) | 2140, 3316 |
| BstBAI | YACGTR | 1 cut(s) | 554 |
| BstC8I | GCNNGC | 8 cut(s) | 33, 1203, 2220, 2668, 2743, 3061, 3156, 3455 |
| BstDSI | CCRYGG | 3 cut(s) | 69, 1276, 3283 |
| BstF5I | GGATG | 6 cut(s) | 148, 372, 1298, 2449, 3436, 3442 |
| BstFNI | CGCG | 2 cut(s) | 71, 3285 |
| BstH2I | RGCGCY | 2 cut(s) | 50, 430 |
| BstHHI | GCGC | 4 cut(s) | 49, 429, 870, 1391 |
| BstMAI | GTCTC | 7 cut(s) | 96, 460, 551, 2083, 2364, 3180, 3409 |
| BstMWI | GCNNNNNNNGC | 6 cut(s) | 41, 1031, 1295, 2792, 2831, 3385 |
| BstNI | CCWGG | 2 cut(s) | 1725, 2280 |
| BstNSI | RCATGY | 2 cut(s) | 1205, 1934 |
| BstSCI | CCNGG | 5 cut(s) | 653, 1723, 2110, 2278, 2284 |
| BstSFI | CTRYAG | 3 cut(s) | 1488, 1851, 2847 |
| BstSLI | GKGCMC | 1 cut(s) | 2668 |
| BstUI | CGCG | 2 cut(s) | 71, 3285 |
| BstV2I | GAAGAC | 2 cut(s) | 845, 1721 |
| BstX2I | RGATCY | 7 cut(s) | 146, 636, 876, 1750, 1924, 2235, 3251 |
| BstYI | RGATCY | 7 cut(s) | 146, 636, 876, 1750, 1924, 2235, 3251 |
| Bsu36I | CCTNAGG | 1 cut(s) | 1686 |
| BsuI | GTATCC | 2 cut(s) | 669, 3193 |
| BsuRI | GGCC | 7 cut(s) | 209, 412, 653, 2284, 2514, 3039, 3407 |
| BtgI | CCRYGG | 3 cut(s) | 69, 1276, 3283 |
| BtsCI | GGATG | 6 cut(s) | 148, 372, 1298, 2449, 3436, 3442 |
| BtsI | GCAGTG | 3 cut(s) | 965, 1041, 2482 |
| BtsIMutI | CAGTG | 7 cut(s) | 308, 483, 965, 1041, 1079, 1678, 2482 |
| BveI | ACCTGC | 1 cut(s) | 1394 |
| Cac8I | GCNNGC | 8 cut(s) | 33, 1203, 2220, 2668, 2743, 3061, 3156, 3455 |
| CaiI | CAGNNNCTG | 3 cut(s) | 1700, 2279, 2855 |
| CciI | TCATGA | 1 cut(s) | 1180 |
| CfoI | GCGC | 4 cut(s) | 49, 429, 870, 1391 |
| Cfr10I | RCCGGY | 1 cut(s) | 1904 |
| Cfr13I | GGNCC | 5 cut(s) | 631, 1619, 2282, 3038, 3304 |
| Cfr42I | CCGCGG | 2 cut(s) | 72, 3286 |
| CseI | GACGC | 2 cut(s) | 2702, 3324 |
| Csp6I | GTAC | 6 cut(s) | 1347, 1457, 1840, 2052, 2768, 3167 |
| CviQI | GTAC | 6 cut(s) | 1347, 1457, 1840, 2052, 2768, 3167 |
| DraI | TTTAAA | 1 cut(s) | 2322 |
| DriI | GACNNNNNGTC | 1 cut(s) | 747 |
| EaeI | YGGCCR | 3 cut(s) | 207, 651, 2512 |
| Eam1104I | CTCTTC | 5 cut(s) | 2086, 2385, 2966, 3061, 3148 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 747 |
| EarI | CTCTTC | 5 cut(s) | 2086, 2385, 2966, 3061, 3148 |
| Ecl136II | GAGCTC | 1 cut(s) | 2982 |
| Eco130I | CCWWGG | 3 cut(s) | 115, 1276, 1995 |
| Eco24I | GRGCYC | 1 cut(s) | 2984 |
| Eco31I | GGTCTC | 1 cut(s) | 2364 |
| Eco32I | GATATC | 1 cut(s) | 256 |
| Eco47I | GGWCC | 3 cut(s) | 631, 1619, 3304 |
| Eco47III | AGCGCT | 1 cut(s) | 48 |
| Eco53kI | GAGCTC | 1 cut(s) | 2982 |
| Eco57I | CTGAAG | 7 cut(s) | 326, 998, 1104, 1718, 1828, 2256, 3198 |
| Eco81I | CCTNAGG | 1 cut(s) | 1686 |
| Eco88I | CYCGRG | 1 cut(s) | 533 |
| EcoICRI | GAGCTC | 1 cut(s) | 2982 |
| EcoO109I | RGGNCCY | 2 cut(s) | 1619, 3038 |
| EcoRI | GAATTC | 1 cut(s) | 2059 |
| EcoRII | CCWGG | 2 cut(s) | 1723, 2278 |
| EcoRV | GATATC | 1 cut(s) | 256 |
| EcoT14I | CCWWGG | 3 cut(s) | 115, 1276, 1995 |
| EcoT38I | GRGCYC | 1 cut(s) | 2984 |
| ErhI | CCWWGG | 3 cut(s) | 115, 1276, 1995 |
| Esp3I | CGTCTC | 1 cut(s) | 96 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 1443, 1475, 3341, 3373 |
| FaqI | GGGAC | 4 cut(s) | 834, 1136, 3125, 3317 |
| FbaI | TGATCA | 1 cut(s) | 585 |
| FblI | GTMKAC | 5 cut(s) | 327, 1012, 1510, 2453, 2873 |
| FokI | GGATG | 6 cut(s) | 155, 359, 1285, 2456, 3443, 3449 |
| FriOI | GRGCYC | 1 cut(s) | 2984 |
| FspI | TGCGCA | 1 cut(s) | 1390 |
| GlaI | GCGC | 4 cut(s) | 48, 428, 869, 1390 |
| GsaI | CCCAGC | 1 cut(s) | 3267 |
| GsuI | CTGGAG | 2 cut(s) | 1344, 2236 |
| HaeII | RGCGCY | 2 cut(s) | 50, 430 |
| HaeIII | GGCC | 7 cut(s) | 209, 412, 653, 2284, 2514, 3039, 3407 |
| HapII | CCGG | 6 cut(s) | 251, 654, 1372, 1905, 2111, 2285 |
| HgaI | GACGC | 2 cut(s) | 2702, 3324 |
| HhaI | GCGC | 4 cut(s) | 49, 429, 870, 1391 |
| Hin1I | GRCGYC | 2 cut(s) | 2140, 3316 |
| Hin6I | GCGC | 4 cut(s) | 47, 427, 868, 1389 |
| HinP1I | GCGC | 4 cut(s) | 47, 427, 868, 1389 |
| HincII | GTYRAC | 6 cut(s) | 225, 328, 444, 2032, 2248, 3354 |
| HindII | GTYRAC | 6 cut(s) | 225, 328, 444, 2032, 2248, 3354 |
| HindIII | AAGCTT | 3 cut(s) | 1976, 2349, 2555 |
| HpaII | CCGG | 6 cut(s) | 251, 654, 1372, 1905, 2111, 2285 |
| HphI | GGTGA | 5 cut(s) | 104, 848, 2293, 2300, 2951 |
| Hpy99I | CGWCG | 2 cut(s) | 2145, 2904 |
| HpyCH4III | ACNGT | 7 cut(s) | 648, 809, 913, 1492, 2150, 2209, 2245 |
| HpyCH4IV | ACGT | 3 cut(s) | 553, 2122, 2140 |
| HpyF10VI | GCNNNNNNNGC | 6 cut(s) | 41, 1031, 1295, 2792, 2831, 3385 |
| HpySE526I | ACGT | 3 cut(s) | 553, 2122, 2140 |
| Hsp92I | GRCGYC | 2 cut(s) | 2140, 3316 |
| HspAI | GCGC | 4 cut(s) | 47, 427, 868, 1389 |
| Kpn2I | TCCGGA | 1 cut(s) | 250 |
| Ksp22I | TGATCA | 1 cut(s) | 585 |
| KspI | CCGCGG | 2 cut(s) | 72, 3286 |
| LguI | GCTCTTC | 2 cut(s) | 2966, 3061 |
| LmnI | GCTCC | 5 cut(s) | 1198, 1409, 1687, 1702, 2852 |
| LweI | GCATC | 9 cut(s) | 720, 1114, 1174, 1250, 1307, 2837, 2932, 3254, 3440 |
| MaeII | ACGT | 3 cut(s) | 553, 2122, 2140 |
| MbiI | CCGCTC | 2 cut(s) | 1682, 2617 |
| MflI | RGATCY | 7 cut(s) | 146, 636, 876, 1750, 1924, 2235, 3251 |
| MhlI | GDGCHC | 7 cut(s) | 247, 495, 572, 1027, 2668, 2978, 2984 |
| MlsI | TGGCCA | 2 cut(s) | 209, 2514 |
| MluNI | TGGCCA | 2 cut(s) | 209, 2514 |
| MlyI | GAGTC | 8 cut(s) | 194, 439, 1077, 1213, 1874, 2644, 3134, 3182 |
| MmeI | TCCRAC | 3 cut(s) | 267, 1506, 3408 |
| Mox20I | TGGCCA | 2 cut(s) | 209, 2514 |
| MroI | TCCGGA | 1 cut(s) | 250 |
| MroXI | GAANNNNTTC | 1 cut(s) | 2806 |
| MscI | TGGCCA | 2 cut(s) | 209, 2514 |
| MseI | TTAA | 6 cut(s) | 161, 1367, 1835, 1874, 2321, 2706 |
| MslI | CAYNNNNRTG | 2 cut(s) | 552, 1586 |
| Msp20I | TGGCCA | 2 cut(s) | 209, 2514 |
| MspA1I | CMGCKG | 4 cut(s) | 71, 1130, 3285, 3379 |
| MspI | CCGG | 6 cut(s) | 251, 654, 1372, 1905, 2111, 2285 |
| MspR9I | CCNGG | 5 cut(s) | 655, 1725, 2112, 2280, 2286 |
| Mva1269I | GAATGC | 3 cut(s) | 953, 1443, 3058 |
| MvaI | CCWGG | 2 cut(s) | 1725, 2280 |
| MvnI | CGCG | 2 cut(s) | 71, 3285 |
| MwoI | GCNNNNNNNGC | 6 cut(s) | 41, 1031, 1295, 2792, 2831, 3385 |
| NciI | CCSGG | 3 cut(s) | 655, 2112, 2286 |
| NcoI | CCATGG | 1 cut(s) | 1276 |
| NheI | GCTAGC | 1 cut(s) | 3059 |
| NlaIV | GGNNCC | 7 cut(s) | 148, 1579, 1678, 1941, 2621, 2958, 3305 |
| NmeAIII | GCCGAG | 3 cut(s) | 1984, 2440, 2771 |
| NmuCI | GTSAC | 4 cut(s) | 923, 963, 2299, 3224 |
| NsbI | TGCGCA | 1 cut(s) | 1390 |
| NspI | RCATGY | 2 cut(s) | 1205, 1934 |
| PaeI | GCATGC | 1 cut(s) | 1205 |
| PagI | TCATGA | 1 cut(s) | 1180 |
| PasI | CCCWGGG | 1 cut(s) | 2279 |
| PciSI | GCTCTTC | 2 cut(s) | 2966, 3061 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 2128 |
| PctI | GAATGC | 3 cut(s) | 953, 1443, 3058 |
| PdmI | GAANNNNTTC | 1 cut(s) | 2806 |
| PfeI | GAWTC | 8 cut(s) | 79, 480, 722, 1232, 2102, 2191, 2807, 3382 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 1078 |
| PleI | GAGTC | 8 cut(s) | 193, 439, 1076, 1213, 1873, 2643, 3134, 3182 |
| PpsI | GAGTC | 8 cut(s) | 193, 439, 1076, 1213, 1873, 2643, 3134, 3182 |
| Ppu21I | YACGTR | 1 cut(s) | 554 |
| PpuMI | RGGWCCY | 1 cut(s) | 1619 |
| PshBI | ATTAAT | 1 cut(s) | 161 |
| Psp124BI | GAGCTC | 1 cut(s) | 2984 |
| Psp5II | RGGWCCY | 1 cut(s) | 1619 |
| Psp6I | CCWGG | 2 cut(s) | 1723, 2278 |
| PspFI | CCCAGC | 1 cut(s) | 3263 |
| PspGI | CCWGG | 2 cut(s) | 1723, 2278 |
| PspN4I | GGNNCC | 7 cut(s) | 148, 1579, 1678, 1941, 2621, 2958, 3305 |
| PspPI | GGNCC | 5 cut(s) | 631, 1619, 2282, 3038, 3304 |
| PspPPI | RGGWCCY | 1 cut(s) | 1619 |
| PstI | CTGCAG | 1 cut(s) | 1855 |
| PstNI | CAGNNNCTG | 3 cut(s) | 1700, 2279, 2855 |
| PsuI | RGATCY | 7 cut(s) | 146, 636, 876, 1750, 1924, 2235, 3251 |
| PvuII | CAGCTG | 2 cut(s) | 1130, 3379 |
| RsaI | GTAC | 6 cut(s) | 1348, 1458, 1841, 2053, 2769, 3168 |
| RsaNI | GTAC | 6 cut(s) | 1347, 1457, 1840, 2052, 2768, 3167 |
| RseI | CAYNNNNRTG | 2 cut(s) | 552, 1586 |
| SacI | GAGCTC | 1 cut(s) | 2984 |
| SacII | CCGCGG | 2 cut(s) | 72, 3286 |
| SalI | GTCGAC | 1 cut(s) | 326 |
| SapI | GCTCTTC | 2 cut(s) | 2966, 3061 |
| SaqAI | TTAA | 6 cut(s) | 161, 1367, 1835, 1874, 2321, 2706 |
| Sau96I | GGNCC | 5 cut(s) | 631, 1619, 2282, 3038, 3304 |
| SchI | GAGTC | 8 cut(s) | 194, 439, 1077, 1213, 1874, 2644, 3134, 3182 |
| ScrFI | CCNGG | 5 cut(s) | 655, 1725, 2112, 2280, 2286 |
| SduI | GDGCHC | 7 cut(s) | 247, 495, 572, 1027, 2668, 2978, 2984 |
| SfaNI | GCATC | 9 cut(s) | 720, 1114, 1174, 1250, 1307, 2837, 2932, 3254, 3440 |
| SfcI | CTRYAG | 3 cut(s) | 1488, 1851, 2847 |
| Sfr303I | CCGCGG | 2 cut(s) | 72, 3286 |
| SgrBI | CCGCGG | 2 cut(s) | 72, 3286 |
| SinI | GGWCC | 3 cut(s) | 631, 1619, 3304 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 552, 1586 |
| SmlI | CTYRAG | 3 cut(s) | 509, 797, 1259 |
| SmoI | CTYRAG | 3 cut(s) | 509, 797, 1259 |
| SpeI | ACTAGT | 1 cut(s) | 1282 |
| SphI | GCATGC | 1 cut(s) | 1205 |
| SspI | AATATT | 1 cut(s) | 1888 |
| SstI | GAGCTC | 1 cut(s) | 2984 |
| StyD4I | CCNGG | 5 cut(s) | 653, 1723, 2110, 2278, 2284 |
| StyI | CCWWGG | 3 cut(s) | 115, 1276, 1995 |
| TaaI | ACNGT | 7 cut(s) | 648, 809, 913, 1492, 2150, 2209, 2245 |
| TaiI | ACGT | 3 cut(s) | 556, 2125, 2143 |
| TaqII | GACCGA | 2 cut(s) | 1810, 3321 |
| TatI | WGTACW | 5 cut(s) | 1346, 1456, 1839, 2767, 3166 |
| TauI | GCSGC | 2 cut(s) | 432, 3285 |
| TfiI | GAWTC | 8 cut(s) | 79, 480, 722, 1232, 2102, 2191, 2807, 3382 |
| Tru1I | TTAA | 6 cut(s) | 161, 1367, 1835, 1874, 2321, 2706 |
| Tru9I | TTAA | 6 cut(s) | 161, 1367, 1835, 1874, 2321, 2706 |
| TscAI | CASTG | 7 cut(s) | 308, 490, 972, 1041, 1079, 1678, 2482 |
| TseFI | GTSAC | 4 cut(s) | 923, 963, 2299, 3224 |
| Tsp45I | GTSAC | 4 cut(s) | 923, 963, 2299, 3224 |
| TspGWI | ACGGA | 2 cut(s) | 11, 2402 |
| TspRI | CASTG | 7 cut(s) | 308, 490, 972, 1041, 1079, 1678, 2482 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 1078 |
| VneI | GTGCAC | 1 cut(s) | 2664 |
| VpaK11BI | GGWCC | 3 cut(s) | 631, 1619, 3304 |
| VspI | ATTAAT | 1 cut(s) | 161 |
| XapI | RAATTY | 4 cut(s) | 120, 2059, 2170, 2532 |
| XceI | RCATGY | 2 cut(s) | 1205, 1934 |
| XmiI | GTMKAC | 5 cut(s) | 327, 1012, 1510, 2453, 2873 |
| XmnI | GAANNNNTTC | 1 cut(s) | 2806 |
| ZraI | GACGTC | 1 cut(s) | 2141 |