Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

OG0017444

Physical Location & Seq

Genomic Coordinates Reverse (-)

1973814 .. 1974869

Gene Structure 1056 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG019100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1056 bp

ATGGAGTGGGCTACGGCAATCCGTGATCTGCTTGCTAACAATGCAGGGCTGCCATATTCTGATTTGTCCGCGGTTGAGAATCAATTATCGTCTCTGGGATTATATCATTTTCACCTTGGAATTTCCCAGTTTAGCTACAAGGATGGATCCAGCAAGACATTGATCGGGTTTTCTGGTTTGATTGAGTCTAGGAAAAAGCATAATTTGGCCATTGTAGGGTGGTTGACCCCTGATTTTCCGAGAGCACCTCCGGATATCTACCTGCTTGCCAAATATGATGAGGTGTTGGAAGCAAATCATCAGTGGGTTAGACCTTGTGGCAAGGTCGACATTCCTTACCTTCAGCAATGGAAAAATCACTCAACTTTATCAATCCTAATTGTTGAGCTAGTTGGTGCTTTTGGTTCATGGCCTCCCTTCATAAAGCGCCGCAACAATAAGTTGACTCCCTCTGTCTCCTCTACTAAGATACTCGAAGGAATCACTGATAAGCACCTTCGAAAAGCCCTCAAGAACCTTCTTTCTGATTTTCCCGAGTTTGGGGTTCAGCTATGTGAGACTAATGTGAGCACTCCCATTCCTTTGATCACGGGTTATATTCCTATTACCTATCATGGCAAGAATTACAAGGTCCAGATCCAAATACAGTTGGCCGGGTATCCACATCAAGCACCACAGGTTTATATTCTATGGGATCGAACCAAGTCCTGCATCAGAGAAGATTCACAATATGTGAGTTCGACTACTGGTCTATTGCATATTCCACTTCTGCAAAATTGGTCTTTTCGTCTGGGCCTTGAGGACTACTGTACTTTGGTGGGACTGGTTTGGAATATGGTCGGCTTGTTTAGTCTTCACCCACCTGTGCGCTCAGGGATCTGTGTGCCTTCCAATTCGGGTACCACCAGTAATTCAAATGAGGAGGAGAGGAGAGAGGAGGAGAATACAGAGGGTGCAGGGTTTGAGTATGAGAGGCAACAAAAAGACCGTGAAAATGAACTAAGGATGTCTGAAGATGTTGGGTGGAGAGGCTTCTTTGACGGTATCTGGAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000813 GO:0000902 GO:0000904 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005769 GO:0005770 GO:0008150 GO:0009653 GO:0009888 GO:0009987 GO:0010008 GO:0010026 GO:0010090 GO:0010091 GO:0012505 GO:0016020 GO:0016043 GO:0030154 GO:0031090 GO:0031410 GO:0031982 GO:0032182 GO:0032502 GO:0032989 GO:0032991 GO:0036452 GO:0043130 GO:0043226 GO:0043227 GO:0043229 GO:0044422 GO:0044424 GO:0044425 GO:0044433 GO:0044440 GO:0044444 GO:0044446 GO:0044464 GO:0048468 GO:0048856 GO:0048869 GO:0051301 GO:0071840 GO:0090558 GO:0090626 GO:0097708 GO:0098588 GO:0098796 GO:0098805

KEGG Pathways

Metabolic & Signaling

ko04144 map04144

Pfam Domains

Protein Families

UEV Vps23_core

Protein Analysis

351

Amino Acids

39.86

Weight (kDa)

6.38

Isoelectric Point (pI)

39.77

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
UEV	PF05743	36 - 139	1.1e-13	UEV domain
UEV	PF05743	170 - 289	1.7e-11	UEV domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017444)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr6g0252011
rosa_laevigata	RLG00000015413 RLG00000015414
rosa_multiflora	Rmu_sc0002522.1_g000051 Rmu_ssc0000165.1_g000003
rosa_samantha	Rh6AG017000 Rh6AG017600 Rh6AG018200 Rh6AG018400 Rh6AG019100 Rh6BG014500 Rh6CG011500 Rh6DG012800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	270
Acc65I	GGTACC	1 cut(s)	899
AccB1I	GGYRCC	1 cut(s)	899
AccI	GTMKAC	1 cut(s)	327
AccII	CGCG	1 cut(s)	71
AccIII	TCCGGA	1 cut(s)	250
AciI	CCGC	3 cut(s)	69, 71, 430
AclWI	GGATC	5 cut(s)	141, 154, 631, 702, 884
AcoI	YGGCCR	2 cut(s)	207, 651
AcsI	RAATTY	1 cut(s)	120
AcuI	CTGAAG	2 cut(s)	326, 1032
AfaI	GTAC	2 cut(s)	811, 901
AfiI	CCNNNNNNNGG	3 cut(s)	216, 539, 540
AgsI	TTSAA	1 cut(s)	915
AhdI	GACNNNNNGTC	1 cut(s)	747
AluBI	AGCT	3 cut(s)	135, 388, 550
AluI	AGCT	3 cut(s)	135, 388, 550
Alw21I	GWGCWC	2 cut(s)	247, 572
Alw26I	GTCTC	3 cut(s)	96, 460, 551
AlwI	GGATC	5 cut(s)	141, 154, 631, 702, 884
Ama87I	CYCGRG	1 cut(s)	533
Aor13HI	TCCGGA	1 cut(s)	250
AoxI	GGCC	4 cut(s)	207, 410, 651, 793
ApeKI	GCWGC	1 cut(s)	49
ApoI	RAATTY	1 cut(s)	120
Asp718I	GGTACC	1 cut(s)	899
AspLEI	GCGC	2 cut(s)	429, 870
AspS9I	GGNCC	2 cut(s)	631, 793
AsuC2I	CCSGG	1 cut(s)	655
AsuHPI	GGTGA	2 cut(s)	104, 848
AsuII	TTCGAA	1 cut(s)	499
AvaI	CYCGRG	1 cut(s)	533
AvaII	GGWCC	1 cut(s)	631
BalI	TGGCCA	1 cut(s)	209
BamHI	GGATCC	1 cut(s)	146
BanI	GGYRCC	1 cut(s)	899
BbsI	GAAGAC	1 cut(s)	845
Bbv12I	GWGCWC	2 cut(s)	247, 572
BbvI	GCAGC	1 cut(s)	36
BccI	CCATC	1 cut(s)	137
BceAI	ACGGC	1 cut(s)	30
BciVI	GTATCC	1 cut(s)	669
BclI	TGATCA	1 cut(s)	585
BcnI	CCSGG	1 cut(s)	655
BcoDI	GTCTC	3 cut(s)	96, 460, 551
BfaI	CTAG	2 cut(s)	189, 389
BfoI	RGCGCY	1 cut(s)	430
BfuAI	ACCTGC	1 cut(s)	270
BfuI	GTATCC	1 cut(s)	669
BisI	GCNGC	2 cut(s)	50, 430
BlsI	GCNGC	2 cut(s)	51, 431
Bme1390I	CCNGG	1 cut(s)	655
Bme18I	GGWCC	1 cut(s)	631
BmeRI	GACNNNNNGTC	1 cut(s)	747
BmeT110I	CYCGRG	1 cut(s)	533
BmgT120I	GGNCC	2 cut(s)	631, 793
BmiI	GGNNCC	2 cut(s)	148, 901
BmrFI	CCNGG	1 cut(s)	655
BmrI	ACTGGG	1 cut(s)	121
BmsI	GCATC	1 cut(s)	720
BmuI	ACTGGG	1 cut(s)	121
BpiI	GAAGAC	1 cut(s)	845
BplI	GAGNNNNNCTC	2 cut(s)	232, 264
Bpu10I	CCTNAGC	1 cut(s)	871
Bpu14I	TTCGAA	1 cut(s)	499
BpuEI	CTTGAG	2 cut(s)	494, 818
BpuMI	CCSGG	1 cut(s)	655
BsaJI	CCNNGG	2 cut(s)	69, 115
BsaWI	WCCGGW	1 cut(s)	250
Bsc4I	CCNNNNNNNGG	3 cut(s)	216, 539, 540
Bse1I	ACTGG	4 cut(s)	127, 751, 828, 906
Bse3DI	GCAATG	1 cut(s)	353
BseAI	TCCGGA	1 cut(s)	250
BseDI	CCNNGG	2 cut(s)	69, 115
BseGI	GGATG	2 cut(s)	148, 1011
BseLI	CCNNNNNNNGG	3 cut(s)	216, 539, 540
BseMI	GCAATG	1 cut(s)	353
BseMII	CTCAG	1 cut(s)	885
BseNI	ACTGG	4 cut(s)	127, 751, 828, 906
BseRI	GAGGAG	6 cut(s)	448, 935, 938, 943, 950, 953
BseXI	GCAGC	1 cut(s)	36
BsgI	GTGCAG	1 cut(s)	975
Bsh1236I	CGCG	1 cut(s)	71
BshFI	GGCC	4 cut(s)	209, 412, 653, 795
BshNI	GGYRCC	1 cut(s)	899
BsiHKAI	GWGCWC	2 cut(s)	247, 572
BsiHKCI	CYCGRG	1 cut(s)	533
BsiSI	CCGG	2 cut(s)	251, 654
BslFI	GGGAC	1 cut(s)	834
BslI	CCNNNNNNNGG	3 cut(s)	216, 539, 540
BsmAI	GTCTC	3 cut(s)	96, 460, 551
BsmBI	CGTCTC	1 cut(s)	96
BsmFI	GGGAC	1 cut(s)	834
BsnI	GGCC	4 cut(s)	209, 412, 653, 795
BsoBI	CYCGRG	1 cut(s)	533
Bsp119I	TTCGAA	1 cut(s)	499
Bsp1286I	GDGCHC	2 cut(s)	247, 572
Bsp13I	TCCGGA	1 cut(s)	250
Bsp143I	GATC	7 cut(s)	25, 146, 162, 585, 636, 694, 876
BspACI	CCGC	3 cut(s)	69, 71, 430
BspANI	GGCC	4 cut(s)	209, 412, 653, 795
BspCNI	CTCAG	1 cut(s)	884
BspEI	TCCGGA	1 cut(s)	250
BspFNI	CGCG	1 cut(s)	71
BspLI	GGNNCC	2 cut(s)	148, 901
BspMI	ACCTGC	1 cut(s)	270
BspPI	GGATC	5 cut(s)	141, 154, 631, 702, 884
BspT104I	TTCGAA	1 cut(s)	499
BspT107I	GGYRCC	1 cut(s)	899
BsrDI	GCAATG	1 cut(s)	353
BsrI	ACTGG	4 cut(s)	127, 751, 828, 906
BssECI	CCNNGG	2 cut(s)	69, 115
BssMI	GATC	7 cut(s)	25, 146, 162, 585, 636, 694, 876
BssT1I	CCWWGG	1 cut(s)	115
Bst4CI	ACNGT	4 cut(s)	648, 809, 989, 1043
BstBI	TTCGAA	1 cut(s)	499
BstC8I	GCNNGC	2 cut(s)	33, 267
BstDEI	CTNAG	3 cut(s)	465, 871, 1001
BstDSI	CCRYGG	1 cut(s)	69
BstF5I	GGATG	2 cut(s)	148, 1011
BstFNI	CGCG	1 cut(s)	71
BstH2I	RGCGCY	1 cut(s)	430
BstHHI	GCGC	2 cut(s)	429, 870
BstKTI	GATC	7 cut(s)	28, 149, 165, 588, 639, 697, 879
BstMAI	GTCTC	3 cut(s)	96, 460, 551
BstMBI	GATC	7 cut(s)	25, 146, 162, 585, 636, 694, 876
BstMWI	GCNNNNNNNGC	1 cut(s)	41
BstSCI	CCNGG	1 cut(s)	653
BstUI	CGCG	1 cut(s)	71
BstV1I	GCAGC	1 cut(s)	36
BstV2I	GAAGAC	1 cut(s)	845
BstX2I	RGATCY	3 cut(s)	146, 636, 876
BstYI	RGATCY	3 cut(s)	146, 636, 876
BsuI	GTATCC	1 cut(s)	669
BsuRI	GGCC	4 cut(s)	209, 412, 653, 795
BtgI	CCRYGG	1 cut(s)	69
BtsCI	GGATG	2 cut(s)	148, 1011
BtsIMutI	CAGTG	2 cut(s)	308, 483
BveI	ACCTGC	1 cut(s)	270
Cac8I	GCNNGC	2 cut(s)	33, 267
CfoI	GCGC	2 cut(s)	429, 870
Cfr13I	GGNCC	2 cut(s)	631, 793
Cfr42I	CCGCGG	1 cut(s)	72
Csp6I	GTAC	2 cut(s)	810, 900
CviAII	CATG	2 cut(s)	408, 614
CviQI	GTAC	2 cut(s)	810, 900
DdeI	CTNAG	3 cut(s)	465, 871, 1001
DpnI	GATC	7 cut(s)	27, 148, 164, 587, 638, 696, 878
DpnII	GATC	7 cut(s)	25, 146, 162, 585, 636, 694, 876
DriI	GACNNNNNGTC	1 cut(s)	747
EaeI	YGGCCR	2 cut(s)	207, 651
Eam1105I	GACNNNNNGTC	1 cut(s)	747
Eco130I	CCWWGG	1 cut(s)	115
Eco32I	GATATC	1 cut(s)	256
Eco47I	GGWCC	1 cut(s)	631
Eco57I	CTGAAG	2 cut(s)	326, 1032
Eco88I	CYCGRG	1 cut(s)	533
EcoRV	GATATC	1 cut(s)	256
EcoT14I	CCWWGG	1 cut(s)	115
ErhI	CCWWGG	1 cut(s)	115
Esp3I	CGTCTC	1 cut(s)	96
FaeI	CATG	2 cut(s)	411, 617
FaqI	GGGAC	1 cut(s)	834
FatI	CATG	2 cut(s)	407, 613
FbaI	TGATCA	1 cut(s)	585
FblI	GTMKAC	1 cut(s)	327
Fnu4HI	GCNGC	2 cut(s)	50, 430
FokI	GGATG	2 cut(s)	155, 1018
Fsp4HI	GCNGC	2 cut(s)	50, 430
FspBI	CTAG	2 cut(s)	189, 389
GlaI	GCGC	2 cut(s)	428, 869
GluI	GCNGC	2 cut(s)	50, 430
HaeII	RGCGCY	1 cut(s)	430
HaeIII	GGCC	4 cut(s)	209, 412, 653, 795
HapII	CCGG	2 cut(s)	251, 654
HhaI	GCGC	2 cut(s)	429, 870
Hin1II	CATG	2 cut(s)	411, 617
Hin6I	GCGC	2 cut(s)	427, 868
HinP1I	GCGC	2 cut(s)	427, 868
HincII	GTYRAC	3 cut(s)	225, 328, 444
HindII	GTYRAC	3 cut(s)	225, 328, 444
HinfI	GANTC	5 cut(s)	79, 185, 445, 480, 722
HpaII	CCGG	2 cut(s)	251, 654
HphI	GGTGA	2 cut(s)	104, 848
Hpy166II	GTNNAC	3 cut(s)	225, 328, 444
Hpy188I	TCNGA	5 cut(s)	61, 240, 526, 716, 1012
Hpy188III	TCNNGA	5 cut(s)	251, 511, 533, 634, 1048
Hpy8I	GTNNAC	3 cut(s)	225, 328, 444
HpyAV	CCTTC	6 cut(s)	350, 427, 470, 506, 527, 897
HpyCH4III	ACNGT	4 cut(s)	648, 809, 989, 1043
HpyCH4V	TGCA	5 cut(s)	44, 711, 757, 772, 956
HpyF10VI	GCNNNNNNNGC	1 cut(s)	41
HpyF3I	CTNAG	3 cut(s)	465, 871, 1001
Hsp92II	CATG	2 cut(s)	411, 617
HspAI	GCGC	2 cut(s)	427, 868
Kpn2I	TCCGGA	1 cut(s)	250
KpnI	GGTACC	1 cut(s)	903
Ksp22I	TGATCA	1 cut(s)	585
KspI	CCGCGG	1 cut(s)	72
Kzo9I	GATC	7 cut(s)	25, 146, 162, 585, 636, 694, 876
Lsp1109I	GCAGC	1 cut(s)	36
LweI	GCATC	1 cut(s)	720
MaeI	CTAG	2 cut(s)	189, 389
MalI	GATC	7 cut(s)	27, 148, 164, 587, 638, 696, 878
MboI	GATC	7 cut(s)	25, 146, 162, 585, 636, 694, 876
MboII	GAAGA	3 cut(s)	731, 845, 1025
MflI	RGATCY	3 cut(s)	146, 636, 876
MhlI	GDGCHC	2 cut(s)	247, 572
MlsI	TGGCCA	1 cut(s)	209
MluCI	AATT	8 cut(s)	83, 120, 202, 378, 622, 775, 892, 910
MluNI	TGGCCA	1 cut(s)	209
MlyI	GAGTC	2 cut(s)	194, 439
MmeI	TCCRAC	1 cut(s)	267
Mox20I	TGGCCA	1 cut(s)	209
MroI	TCCGGA	1 cut(s)	250
MscI	TGGCCA	1 cut(s)	209
Msp20I	TGGCCA	1 cut(s)	209
MspA1I	CMGCKG	1 cut(s)	71
MspI	CCGG	2 cut(s)	251, 654
MspR9I	CCNGG	1 cut(s)	655
MvnI	CGCG	1 cut(s)	71
MwoI	GCNNNNNNNGC	1 cut(s)	41
NciI	CCSGG	1 cut(s)	655
NdeII	GATC	7 cut(s)	25, 146, 162, 585, 636, 694, 876
NlaIII	CATG	2 cut(s)	411, 617
NlaIV	GGNNCC	2 cut(s)	148, 901
NspV	TTCGAA	1 cut(s)	499
PfeI	GAWTC	3 cut(s)	79, 480, 722
PkrI	GCNGC	2 cut(s)	51, 431
PleI	GAGTC	2 cut(s)	193, 439
PpsI	GAGTC	2 cut(s)	193, 439
PspN4I	GGNNCC	2 cut(s)	148, 901
PspPI	GGNCC	2 cut(s)	631, 793
PsuI	RGATCY	3 cut(s)	146, 636, 876
RsaI	GTAC	2 cut(s)	811, 901
RsaNI	GTAC	2 cut(s)	810, 900
SacII	CCGCGG	1 cut(s)	72
SalI	GTCGAC	1 cut(s)	326
SatI	GCNGC	2 cut(s)	50, 430
Sau3AI	GATC	7 cut(s)	25, 146, 162, 585, 636, 694, 876
Sau96I	GGNCC	2 cut(s)	631, 793
SchI	GAGTC	2 cut(s)	194, 439
ScrFI	CCNGG	1 cut(s)	655
SduI	GDGCHC	2 cut(s)	247, 572
SfaNI	GCATC	1 cut(s)	720
Sfr303I	CCGCGG	1 cut(s)	72
SfuI	TTCGAA	1 cut(s)	499
SgrBI	CCGCGG	1 cut(s)	72
SinI	GGWCC	1 cut(s)	631
SmlI	CTYRAG	2 cut(s)	509, 797
SmoI	CTYRAG	2 cut(s)	509, 797
Sse9I	AATT	8 cut(s)	83, 120, 202, 378, 622, 775, 892, 910
SsiI	CCGC	3 cut(s)	69, 71, 430
SspMI	CTAG	2 cut(s)	189, 389
StyD4I	CCNGG	1 cut(s)	653
StyI	CCWWGG	1 cut(s)	115
TaaI	ACNGT	4 cut(s)	648, 809, 989, 1043
TaqI	TCGA	5 cut(s)	327, 474, 499, 697, 740
TasI	AATT	8 cut(s)	83, 120, 202, 378, 622, 775, 892, 910
TatI	WGTACW	1 cut(s)	809
TauI	GCSGC	1 cut(s)	432
TfiI	GAWTC	3 cut(s)	79, 480, 722
TscAI	CASTG	2 cut(s)	308, 490
TseI	GCWGC	1 cut(s)	49
TspDTI	ATGAA	3 cut(s)	396, 409, 1011
TspGWI	ACGGA	1 cut(s)	11
TspRI	CASTG	2 cut(s)	308, 490
VpaK11BI	GGWCC	1 cut(s)	631
XapI	RAATTY	1 cut(s)	120
XmiI	GTMKAC	1 cut(s)	327
XspI	CTAG	2 cut(s)	189, 389

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.