Rh6DG012800

Tumor susceptibility

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
OG0017444
Physical Location & Seq
Reverse (-)
1255057 .. 1255374
318 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6DG012800.1

Sequence Viewer

Length: 318 bp
ATGGTTGAGAATCAATTATTGTATCTGGGATTATATGATTTTCGCGTTGGAATTTACCGGTTTAGTTACAAAGATGGTTCCAACAAGACATTAATCGGGTTTTCTGGTTTGATGGAGTGTGGGAAAAAGCATAATATTGCCATAGTATGGTGGTTGACCCCTAATTTTCCGAGAGCACCTCCGGATATCTACCTGCTAGCCAAATATGATGAGGTGTTGCAAGCAAATCATCGGTGGGTTAGACCTTGTGGCAAGGTCGACATTCCTTACATTCAGAAGTGGAAAAAATCACTCCACTTTAGCCAACCTAATTGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04144 map04144
Pfam Domains
Protein Families
UEV

Protein Analysis

105

Amino Acids

12.35

Weight (kDa)

9.35

Isoelectric Point (pI)

32.78

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
UEV PF05743 13 - 96 2.8e-12 UEV domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 201
AccB7I CCANNNNNTGG 1 cut(s) 147
AccI GTMKAC 1 cut(s) 258
AccII CGCG 1 cut(s) 45
AccIII TCCGGA 1 cut(s) 181
AcsI RAATTY 1 cut(s) 51
AfiI CCNNNNNNNGG 1 cut(s) 147
AgeI ACCGGT 1 cut(s) 57
Alw21I GWGCWC 1 cut(s) 178
Aor13HI TCCGGA 1 cut(s) 181
ApoI RAATTY 1 cut(s) 51
AseI ATTAAT 1 cut(s) 92
AsiGI ACCGGT 1 cut(s) 57
AsuNHI GCTAGC 1 cut(s) 196
Bbv12I GWGCWC 1 cut(s) 178
BccI CCATC 2 cut(s) 68, 106
BfaI CTAG 1 cut(s) 197
BfuAI ACCTGC 1 cut(s) 201
BmiI GGNNCC 1 cut(s) 79
BmtI GCTAGC 1 cut(s) 200
BplI GAGNNNNNCTC 2 cut(s) 163, 195
BsaWI WCCGGW 2 cut(s) 57, 181
Bsc4I CCNNNNNNNGG 1 cut(s) 147
Bse118I RCCGGY 1 cut(s) 57
BseAI TCCGGA 1 cut(s) 181
BseLI CCNNNNNNNGG 1 cut(s) 147
Bsh1236I CGCG 1 cut(s) 45
BshTI ACCGGT 1 cut(s) 57
BsiHKAI GWGCWC 1 cut(s) 178
BsiSI CCGG 2 cut(s) 58, 182
BslI CCNNNNNNNGG 1 cut(s) 147
Bsp1286I GDGCHC 1 cut(s) 178
Bsp13I TCCGGA 1 cut(s) 181
BspEI TCCGGA 1 cut(s) 181
BspFNI CGCG 1 cut(s) 45
BspLI GGNNCC 1 cut(s) 79
BspMI ACCTGC 1 cut(s) 201
BspOI GCTAGC 1 cut(s) 200
BsrFI RCCGGY 1 cut(s) 57
BssAI RCCGGY 1 cut(s) 57
BstC8I GCNNGC 2 cut(s) 198, 222
BstFNI CGCG 1 cut(s) 45
BstUI CGCG 1 cut(s) 45
BveI ACCTGC 1 cut(s) 201
Cac8I GCNNGC 2 cut(s) 198, 222
Cfr10I RCCGGY 1 cut(s) 57
CspAI ACCGGT 1 cut(s) 57
CviJI RGCY 2 cut(s) 200, 303
CviKI_1 RGCY 2 cut(s) 200, 303
Eco32I GATATC 1 cut(s) 187
EcoRV GATATC 1 cut(s) 187
FaiI YATR 6 cut(s) 34, 36, 132, 143, 148, 207
FblI GTMKAC 1 cut(s) 258
FspBI CTAG 1 cut(s) 197
HapII CCGG 2 cut(s) 58, 182
HincII GTYRAC 2 cut(s) 156, 259
HindII GTYRAC 2 cut(s) 156, 259
HinfI GANTC 1 cut(s) 10
HpaII CCGG 2 cut(s) 58, 182
Hpy166II GTNNAC 2 cut(s) 156, 259
Hpy188I TCNGA 2 cut(s) 171, 276
Hpy188III TCNNGA 1 cut(s) 182
Hpy8I GTNNAC 2 cut(s) 156, 259
HpyCH4V TGCA 1 cut(s) 220
Kpn2I TCCGGA 1 cut(s) 181
LpnPI CCDG 5 cut(s) 11, 71, 90, 195, 206
MaeI CTAG 1 cut(s) 197
MaeIII GTNAC 1 cut(s) 65
MhlI GDGCHC 1 cut(s) 178
MluCI AATT 4 cut(s) 14, 51, 163, 310
MmeI TCCRAC 2 cut(s) 28, 105
MnlI CCTC 2 cut(s) 189, 205
MroI TCCGGA 1 cut(s) 181
MseI TTAA 1 cut(s) 92
MspI CCGG 2 cut(s) 58, 182
MvnI CGCG 1 cut(s) 45
NheI GCTAGC 1 cut(s) 196
NlaIV GGNNCC 1 cut(s) 79
PfeI GAWTC 1 cut(s) 10
PflMI CCANNNNNTGG 1 cut(s) 147
PinAI ACCGGT 1 cut(s) 57
PshBI ATTAAT 1 cut(s) 92
PspN4I GGNNCC 1 cut(s) 79
SalI GTCGAC 1 cut(s) 257
SaqAI TTAA 1 cut(s) 92
SduI GDGCHC 1 cut(s) 178
SetI ASST 6 cut(s) 181, 195, 216, 247, 258, 310
Sse9I AATT 4 cut(s) 14, 51, 163, 310
SspI AATATT 1 cut(s) 136
SspMI CTAG 1 cut(s) 197
TaqI TCGA 1 cut(s) 258
TasI AATT 4 cut(s) 14, 51, 163, 310
TfiI GAWTC 1 cut(s) 10
Tru1I TTAA 1 cut(s) 92
Tru9I TTAA 1 cut(s) 92
Van91I CCANNNNNTGG 1 cut(s) 147
VspI ATTAAT 1 cut(s) 92
XapI RAATTY 1 cut(s) 51
XmiI GTMKAC 1 cut(s) 258
XspI CTAG 1 cut(s) 197
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.