E3 ubiquitin-protein ligase
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| Species | Orthologous Gene IDs |
|---|---|
| rosa_chinensis | RchiOBHm_Chr6g0252011 |
| rosa_laevigata | RLG00000015413 RLG00000015414 |
| rosa_multiflora | Rmu_sc0002522.1_g000051 Rmu_ssc0000165.1_g000003 |
| rosa_samantha | Rh6AG017000 Rh6AG017600 Rh6AG018200 Rh6AG018400 Rh6AG019100 Rh6BG014500 Rh6CG011500 Rh6DG012800 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 4641 |
| AatII | GACGTC | 1 cut(s) | 1936 |
| Acc16I | TGCGCA | 1 cut(s) | 1183 |
| Acc36I | ACCTGC | 2 cut(s) | 270, 1187 |
| Acc65I | GGTACC | 2 cut(s) | 896, 950 |
| AccB1I | GGYRCC | 3 cut(s) | 896, 950, 4313 |
| AccBSI | CCGCTC | 2 cut(s) | 2563, 4973 |
| AccI | GTMKAC | 4 cut(s) | 327, 1303, 2327, 2864 |
| AccII | CGCG | 3 cut(s) | 71, 3375, 4773 |
| AccIII | TCCGGA | 1 cut(s) | 250 |
| AcoI | YGGCCR | 4 cut(s) | 207, 648, 4654, 5047 |
| AcsI | RAATTY | 9 cut(s) | 120, 1852, 1963, 2406, 2769, 2815, 3898, 3944, 4396 |
| AcuI | CTGAAG | 7 cut(s) | 326, 1511, 1621, 2088, 2433, 4118, 5295 |
| AcyI | GRCGYC | 2 cut(s) | 1933, 3406 |
| AfeI | AGCGCT | 1 cut(s) | 1474 |
| AflIII | ACRYGT | 2 cut(s) | 2069, 4857 |
| AjnI | CCWGG | 6 cut(s) | 1222, 1516, 2110, 4502, 4840, 5218 |
| Alw21I | GWGCWC | 8 cut(s) | 247, 492, 569, 2614, 2674, 2969, 2975, 5206 |
| Alw44I | GTGCAC | 2 cut(s) | 2610, 5202 |
| AlwNI | CAGNNNCTG | 4 cut(s) | 989, 2111, 2846, 3284 |
| Aor13HI | TCCGGA | 1 cut(s) | 250 |
| Aor51HI | AGCGCT | 1 cut(s) | 1474 |
| ApaLI | GTGCAC | 2 cut(s) | 2610, 5202 |
| ApoI | RAATTY | 9 cut(s) | 120, 1852, 1963, 2406, 2769, 2815, 3898, 3944, 4396 |
| AseI | ATTAAT | 1 cut(s) | 161 |
| Asp700I | GAANNNNTTC | 3 cut(s) | 2754, 2782, 5266 |
| Asp718I | GGTACC | 2 cut(s) | 896, 950 |
| AspA2I | CCTAGG | 1 cut(s) | 5207 |
| AspLEI | GCGC | 6 cut(s) | 429, 867, 1184, 1475, 4123, 5354 |
| AspS9I | GGNCC | 5 cut(s) | 628, 1412, 1589, 3029, 4325 |
| AsuC2I | CCSGG | 4 cut(s) | 652, 1905, 4318, 4869 |
| AvaII | GGWCC | 3 cut(s) | 628, 1412, 4325 |
| AvrII | CCTAGG | 1 cut(s) | 5207 |
| AxyI | CCTNAGG | 1 cut(s) | 1479 |
| BaeGI | GKGCMC | 3 cut(s) | 2614, 4316, 5206 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 3186, 3219 |
| BalI | TGGCCA | 2 cut(s) | 209, 4656 |
| BamHI | GGATCC | 2 cut(s) | 146, 5435 |
| BanI | GGYRCC | 3 cut(s) | 896, 950, 4313 |
| BanII | GRGCYC | 2 cut(s) | 2975, 5123 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 1616, 1648 |
| BauI | CACGAG | 3 cut(s) | 1491, 2968, 4116 |
| BbsI | GAAGAC | 6 cut(s) | 842, 1514, 4010, 4087, 4124, 4712 |
| Bbv12I | GWGCWC | 8 cut(s) | 247, 492, 569, 2614, 2674, 2969, 2975, 5206 |
| BbvCI | CCTCAGC | 1 cut(s) | 3189 |
| BceAI | ACGGC | 3 cut(s) | 30, 1369, 5034 |
| BcgI | CGANNNNNNTGC | 4 cut(s) | 3455, 3489, 4763, 4797 |
| BciT130I | CCWGG | 6 cut(s) | 1224, 1518, 2112, 4504, 4842, 5220 |
| BciVI | GTATCC | 3 cut(s) | 666, 3187, 5099 |
| BclI | TGATCA | 4 cut(s) | 582, 4438, 5083, 5098 |
| BcnI | CCSGG | 4 cut(s) | 652, 1905, 4318, 4869 |
| BfmI | CTRYAG | 7 cut(s) | 990, 1281, 1644, 2838, 3201, 3264, 3342 |
| BfoI | RGCGCY | 2 cut(s) | 430, 1476 |
| BfuAI | ACCTGC | 2 cut(s) | 270, 1187 |
| BfuI | GTATCC | 3 cut(s) | 666, 3187, 5099 |
| BlnI | CCTAGG | 1 cut(s) | 5207 |
| BlpI | GCTNAGC | 1 cut(s) | 2737 |
| BmcAI | AGTACT | 2 cut(s) | 2096, 3819 |
| Bme18I | GGWCC | 3 cut(s) | 628, 1412, 4325 |
| BmgT120I | GGNCC | 5 cut(s) | 628, 1412, 1589, 3029, 4325 |
| BmrI | ACTGGG | 3 cut(s) | 16, 121, 5313 |
| BmsI | GCATC | 9 cut(s) | 1100, 2813, 2923, 3647, 3730, 3982, 4681, 4765, 4915 |
| BmuI | ACTGGG | 3 cut(s) | 16, 121, 5313 |
| BpiI | GAAGAC | 6 cut(s) | 842, 1514, 4010, 4087, 4124, 4712 |
| BpmI | CTGGAG | 5 cut(s) | 815, 1137, 1206, 2029, 3842 |
| Bpu10I | CCTNAGC | 3 cut(s) | 868, 3189, 5166 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 2737 |
| BpuEI | CTTGAG | 5 cut(s) | 491, 2432, 3931, 4355, 5162 |
| BpuMI | CCSGG | 4 cut(s) | 652, 1905, 4318, 4869 |
| BsaAI | YACGTR | 1 cut(s) | 4858 |
| BsaBI | GATNNNNATC | 1 cut(s) | 5328 |
| BsaHI | GRCGYC | 2 cut(s) | 1933, 3406 |
| BsaI | GGTCTC | 2 cut(s) | 2238, 3387 |
| BsaWI | WCCGGW | 3 cut(s) | 250, 4227, 4563 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 1273, 1303 |
| Bse118I | RCCGGY | 1 cut(s) | 1697 |
| Bse21I | CCTNAGG | 1 cut(s) | 1479 |
| Bse3DI | GCAATG | 4 cut(s) | 353, 3333, 3354, 4465 |
| Bse8I | GATNNNNATC | 1 cut(s) | 5328 |
| BseAI | TCCGGA | 1 cut(s) | 250 |
| BseBI | CCWGG | 6 cut(s) | 1224, 1518, 2112, 4504, 4842, 5220 |
| BseGI | GGATG | 9 cut(s) | 148, 372, 1091, 2194, 2323, 3526, 3532, 3732, 3910 |
| BseJI | GATNNNNATC | 1 cut(s) | 5328 |
| BseMI | GCAATG | 4 cut(s) | 353, 3333, 3354, 4465 |
| BseSI | GKGCMC | 3 cut(s) | 2614, 4316, 5206 |
| BseYI | CCCAGC | 2 cut(s) | 2643, 3353 |
| BsgI | GTGCAG | 1 cut(s) | 4027 |
| Bsh1236I | CGCG | 3 cut(s) | 71, 3375, 4773 |
| BshNI | GGYRCC | 3 cut(s) | 896, 950, 4313 |
| BsiHKAI | GWGCWC | 8 cut(s) | 247, 492, 569, 2614, 2674, 2969, 2975, 5206 |
| BslFI | GGGAC | 4 cut(s) | 831, 3116, 4485, 5314 |
| BsmBI | CGTCTC | 2 cut(s) | 96, 5060 |
| BsmFI | GGGAC | 4 cut(s) | 831, 3116, 4485, 5314 |
| BsmI | GAATGC | 3 cut(s) | 1236, 2182, 5266 |
| Bso31I | GGTCTC | 2 cut(s) | 2238, 3387 |
| Bsp13I | TCCGGA | 1 cut(s) | 250 |
| Bsp1407I | TGTACA | 1 cut(s) | 5397 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 2737 |
| Bsp68I | TCGCGA | 1 cut(s) | 4773 |
| BspEI | TCCGGA | 1 cut(s) | 250 |
| BspFNI | CGCG | 3 cut(s) | 71, 3375, 4773 |
| BspHI | TCATGA | 2 cut(s) | 4357, 5450 |
| BspMAI | CTGCAG | 4 cut(s) | 994, 1648, 3268, 3346 |
| BspMI | ACCTGC | 2 cut(s) | 270, 1187 |
| BspQI | GCTCTTC | 5 cut(s) | 2484, 2957, 3052, 4599, 5111 |
| BspT107I | GGYRCC | 3 cut(s) | 896, 950, 4313 |
| BspTNI | GGTCTC | 2 cut(s) | 2238, 3387 |
| BsrBI | CCGCTC | 2 cut(s) | 2563, 4973 |
| BsrDI | GCAATG | 4 cut(s) | 353, 3333, 3354, 4465 |
| BsrFI | RCCGGY | 1 cut(s) | 1697 |
| BsrGI | TGTACA | 1 cut(s) | 5397 |
| BssAI | RCCGGY | 1 cut(s) | 1697 |
| BssNI | GRCGYC | 2 cut(s) | 1933, 3406 |
| BssSI | CACGAG | 3 cut(s) | 1491, 2968, 4116 |
| BssT1I | CCWWGG | 4 cut(s) | 115, 1788, 5207, 5385 |
| Bst2BI | CACGAG | 3 cut(s) | 1491, 2968, 4116 |
| Bst2UI | CCWGG | 6 cut(s) | 1224, 1518, 2112, 4504, 4842, 5220 |
| BstACI | GRCGYC | 2 cut(s) | 1933, 3406 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 5285 |
| BstAUI | TGTACA | 1 cut(s) | 5397 |
| BstBAI | YACGTR | 1 cut(s) | 4858 |
| BstDSI | CCRYGG | 2 cut(s) | 69, 3373 |
| BstEII | GGTNACC | 2 cut(s) | 1996, 4532 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 3610 |
| BstF5I | GGATG | 9 cut(s) | 148, 372, 1091, 2194, 2323, 3526, 3532, 3732, 3910 |
| BstFNI | CGCG | 3 cut(s) | 71, 3375, 4773 |
| BstH2I | RGCGCY | 2 cut(s) | 430, 1476 |
| BstHHI | GCGC | 6 cut(s) | 429, 867, 1184, 1475, 4123, 5354 |
| BstNI | CCWGG | 6 cut(s) | 1224, 1518, 2112, 4504, 4842, 5220 |
| BstNSI | RCATGY | 4 cut(s) | 1727, 2073, 4053, 5352 |
| BstPI | GGTNACC | 2 cut(s) | 1996, 4532 |
| BstSFI | CTRYAG | 7 cut(s) | 990, 1281, 1644, 2838, 3201, 3264, 3342 |
| BstSLI | GKGCMC | 3 cut(s) | 2614, 4316, 5206 |
| BstUI | CGCG | 3 cut(s) | 71, 3375, 4773 |
| BstV2I | GAAGAC | 6 cut(s) | 842, 1514, 4010, 4087, 4124, 4712 |
| BstX2I | RGATCY | 8 cut(s) | 146, 633, 873, 1543, 1717, 2028, 3245, 5435 |
| BstYI | RGATCY | 8 cut(s) | 146, 633, 873, 1543, 1717, 2028, 3245, 5435 |
| Bsu36I | CCTNAGG | 1 cut(s) | 1479 |
| BsuI | GTATCC | 3 cut(s) | 666, 3187, 5099 |
| BtgI | CCRYGG | 2 cut(s) | 69, 3373 |
| BtgZI | GCGATG | 2 cut(s) | 2946, 4788 |
| BtsCI | GGATG | 9 cut(s) | 148, 372, 1091, 2194, 2323, 3526, 3532, 3732, 3910 |
| BtsI | GCAGTG | 4 cut(s) | 3556, 4015, 5109, 5238 |
| BtsIMutI | CAGTG | 8 cut(s) | 308, 480, 1471, 2028, 3556, 4015, 5109, 5238 |
| BtuMI | TCGCGA | 1 cut(s) | 4773 |
| BveI | ACCTGC | 2 cut(s) | 270, 1187 |
| CaiI | CAGNNNCTG | 4 cut(s) | 989, 2111, 2846, 3284 |
| CciI | TCATGA | 2 cut(s) | 4357, 5450 |
| CfoI | GCGC | 6 cut(s) | 429, 867, 1184, 1475, 4123, 5354 |
| Cfr10I | RCCGGY | 1 cut(s) | 1697 |
| Cfr13I | GGNCC | 5 cut(s) | 628, 1412, 1589, 3029, 4325 |
| Cfr42I | CCGCGG | 2 cut(s) | 72, 3376 |
| CseI | GACGC | 2 cut(s) | 2648, 3414 |
| CspCI | CAANNNNNGTGG | 4 cut(s) | 2004, 2039, 5010, 5045 |
| DraI | TTTAAA | 1 cut(s) | 2154 |
| EaeI | YGGCCR | 4 cut(s) | 207, 648, 4654, 5047 |
| Ecl136II | GAGCTC | 1 cut(s) | 2973 |
| Eco130I | CCWWGG | 4 cut(s) | 115, 1788, 5207, 5385 |
| Eco24I | GRGCYC | 2 cut(s) | 2975, 5123 |
| Eco31I | GGTCTC | 2 cut(s) | 2238, 3387 |
| Eco32I | GATATC | 2 cut(s) | 256, 4888 |
| Eco47I | GGWCC | 3 cut(s) | 628, 1412, 4325 |
| Eco47III | AGCGCT | 1 cut(s) | 1474 |
| Eco53kI | GAGCTC | 1 cut(s) | 2973 |
| Eco57I | CTGAAG | 7 cut(s) | 326, 1511, 1621, 2088, 2433, 4118, 5295 |
| Eco81I | CCTNAGG | 1 cut(s) | 1479 |
| Eco91I | GGTNACC | 2 cut(s) | 1996, 4532 |
| EcoICRI | GAGCTC | 1 cut(s) | 2973 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 3610 |
| EcoO109I | RGGNCCY | 3 cut(s) | 1412, 3029, 4325 |
| EcoO65I | GGTNACC | 2 cut(s) | 1996, 4532 |
| EcoRI | GAATTC | 2 cut(s) | 1852, 2769 |
| EcoRII | CCWGG | 6 cut(s) | 1222, 1516, 2110, 4502, 4840, 5218 |
| EcoRV | GATATC | 2 cut(s) | 256, 4888 |
| EcoT14I | CCWWGG | 4 cut(s) | 115, 1788, 5207, 5385 |
| EcoT38I | GRGCYC | 2 cut(s) | 2975, 5123 |
| ErhI | CCWWGG | 4 cut(s) | 115, 1788, 5207, 5385 |
| Esp3I | CGTCTC | 2 cut(s) | 96, 5060 |
| FaqI | GGGAC | 4 cut(s) | 831, 3116, 4485, 5314 |
| FauI | CCCGC | 2 cut(s) | 2110, 4966 |
| FbaI | TGATCA | 4 cut(s) | 582, 4438, 5083, 5098 |
| FblI | GTMKAC | 4 cut(s) | 327, 1303, 2327, 2864 |
| FokI | GGATG | 9 cut(s) | 155, 359, 1078, 2201, 2330, 3533, 3539, 3739, 3917 |
| FriOI | GRGCYC | 2 cut(s) | 2975, 5123 |
| FspI | TGCGCA | 1 cut(s) | 1183 |
| GlaI | GCGC | 6 cut(s) | 428, 866, 1183, 1474, 4122, 5353 |
| GsaI | CCCAGC | 2 cut(s) | 2647, 3357 |
| GsuI | CTGGAG | 5 cut(s) | 815, 1137, 1206, 2029, 3842 |
| HaeII | RGCGCY | 2 cut(s) | 430, 1476 |
| HgaI | GACGC | 2 cut(s) | 2648, 3414 |
| HhaI | GCGC | 6 cut(s) | 429, 867, 1184, 1475, 4123, 5354 |
| Hin1I | GRCGYC | 2 cut(s) | 1933, 3406 |
| Hin6I | GCGC | 6 cut(s) | 427, 865, 1182, 1473, 4121, 5352 |
| HinP1I | GCGC | 6 cut(s) | 427, 865, 1182, 1473, 4121, 5352 |
| HincII | GTYRAC | 8 cut(s) | 225, 328, 1825, 2041, 2438, 3444, 4041, 4465 |
| HindII | GTYRAC | 8 cut(s) | 225, 328, 1825, 2041, 2438, 3444, 4041, 4465 |
| HindIII | AAGCTT | 5 cut(s) | 1769, 2223, 2429, 2734, 5366 |
| Hpy99I | CGWCG | 3 cut(s) | 1938, 2895, 3673 |
| HpyCH4IV | ACGT | 5 cut(s) | 1077, 1915, 1933, 4201, 4857 |
| HpySE526I | ACGT | 5 cut(s) | 1077, 1915, 1933, 4201, 4857 |
| Hsp92I | GRCGYC | 2 cut(s) | 1933, 3406 |
| HspAI | GCGC | 6 cut(s) | 427, 865, 1182, 1473, 4121, 5352 |
| Kpn2I | TCCGGA | 1 cut(s) | 250 |
| KpnI | GGTACC | 2 cut(s) | 900, 954 |
| Ksp22I | TGATCA | 4 cut(s) | 582, 4438, 5083, 5098 |
| KspI | CCGCGG | 2 cut(s) | 72, 3376 |
| LguI | GCTCTTC | 5 cut(s) | 2484, 2957, 3052, 4599, 5111 |
| LmnI | GCTCC | 4 cut(s) | 1202, 1480, 2843, 4483 |
| LweI | GCATC | 9 cut(s) | 1100, 2813, 2923, 3647, 3730, 3982, 4681, 4765, 4915 |
| MaeII | ACGT | 5 cut(s) | 1077, 1915, 1933, 4201, 4857 |
| MbiI | CCGCTC | 2 cut(s) | 2563, 4973 |
| MfeI | CAATTG | 2 cut(s) | 4779, 4809 |
| MflI | RGATCY | 8 cut(s) | 146, 633, 873, 1543, 1717, 2028, 3245, 5435 |
| MlsI | TGGCCA | 2 cut(s) | 209, 4656 |
| MluNI | TGGCCA | 2 cut(s) | 209, 4656 |
| MlyI | GAGTC | 8 cut(s) | 194, 1667, 2590, 3125, 3176, 4069, 4232, 5068 |
| MmeI | TCCRAC | 5 cut(s) | 267, 1299, 3498, 3625, 4168 |
| Mox20I | TGGCCA | 2 cut(s) | 209, 4656 |
| MroI | TCCGGA | 1 cut(s) | 250 |
| MroXI | GAANNNNTTC | 3 cut(s) | 2754, 2782, 5266 |
| MscI | TGGCCA | 2 cut(s) | 209, 4656 |
| MslI | CAYNNNNRTG | 2 cut(s) | 1057, 1379 |
| Msp20I | TGGCCA | 2 cut(s) | 209, 4656 |
| MspA1I | CMGCKG | 4 cut(s) | 71, 3375, 3469, 4244 |
| MunI | CAATTG | 2 cut(s) | 4779, 4809 |
| Mva1269I | GAATGC | 3 cut(s) | 1236, 2182, 5266 |
| MvaI | CCWGG | 6 cut(s) | 1224, 1518, 2112, 4504, 4842, 5220 |
| MvnI | CGCG | 3 cut(s) | 71, 3375, 4773 |
| NciI | CCSGG | 4 cut(s) | 652, 1905, 4318, 4869 |
| NmeAIII | GCCGAG | 3 cut(s) | 2314, 3164, 4720 |
| NmuCI | GTSAC | 5 cut(s) | 2131, 2387, 3218, 3729, 4763 |
| NruI | TCGCGA | 1 cut(s) | 4773 |
| NsbI | TGCGCA | 1 cut(s) | 1183 |
| NspI | RCATGY | 4 cut(s) | 1727, 2073, 4053, 5352 |
| PaeI | GCATGC | 1 cut(s) | 4053 |
| PagI | TCATGA | 2 cut(s) | 4357, 5450 |
| PasI | CCCWGGG | 1 cut(s) | 2111 |
| PciI | ACATGT | 1 cut(s) | 2069 |
| PciSI | GCTCTTC | 5 cut(s) | 2484, 2957, 3052, 4599, 5111 |
| PcsI | WCGNNNNNNNCGW | 3 cut(s) | 1021, 1921, 2773 |
| PctI | GAATGC | 3 cut(s) | 1236, 2182, 5266 |
| PdmI | GAANNNNTTC | 3 cut(s) | 2754, 2782, 5266 |
| PflFI | GACNNNGTC | 1 cut(s) | 4469 |
| PleI | GAGTC | 8 cut(s) | 193, 1666, 2589, 3125, 3176, 4069, 4232, 5068 |
| PpsI | GAGTC | 8 cut(s) | 193, 1666, 2589, 3125, 3176, 4069, 4232, 5068 |
| Ppu21I | YACGTR | 1 cut(s) | 4858 |
| PpuMI | RGGWCCY | 2 cut(s) | 1412, 4325 |
| PscI | ACATGT | 1 cut(s) | 2069 |
| PshBI | ATTAAT | 1 cut(s) | 161 |
| PsiI | TTATAA | 1 cut(s) | 4641 |
| Psp124BI | GAGCTC | 1 cut(s) | 2975 |
| Psp5II | RGGWCCY | 2 cut(s) | 1412, 4325 |
| Psp6I | CCWGG | 6 cut(s) | 1222, 1516, 2110, 4502, 4840, 5218 |
| PspEI | GGTNACC | 2 cut(s) | 1996, 4532 |
| PspFI | CCCAGC | 2 cut(s) | 2643, 3353 |
| PspGI | CCWGG | 6 cut(s) | 1222, 1516, 2110, 4502, 4840, 5218 |
| PspPI | GGNCC | 5 cut(s) | 628, 1412, 1589, 3029, 4325 |
| PspPPI | RGGWCCY | 2 cut(s) | 1412, 4325 |
| PstI | CTGCAG | 4 cut(s) | 994, 1648, 3268, 3346 |
| PstNI | CAGNNNCTG | 4 cut(s) | 989, 2111, 2846, 3284 |
| PsuI | RGATCY | 8 cut(s) | 146, 633, 873, 1543, 1717, 2028, 3245, 5435 |
| PsyI | GACNNNGTC | 1 cut(s) | 4469 |
| PvuII | CAGCTG | 1 cut(s) | 3469 |
| RruI | TCGCGA | 1 cut(s) | 4773 |
| RseI | CAYNNNNRTG | 2 cut(s) | 1057, 1379 |
| SacI | GAGCTC | 1 cut(s) | 2975 |
| SacII | CCGCGG | 2 cut(s) | 72, 3376 |
| SalI | GTCGAC | 1 cut(s) | 326 |
| SapI | GCTCTTC | 5 cut(s) | 2484, 2957, 3052, 4599, 5111 |
| Sau96I | GGNCC | 5 cut(s) | 628, 1412, 1589, 3029, 4325 |
| ScaI | AGTACT | 2 cut(s) | 2096, 3819 |
| SchI | GAGTC | 8 cut(s) | 194, 1667, 2590, 3125, 3176, 4069, 4232, 5068 |
| SfaNI | GCATC | 9 cut(s) | 1100, 2813, 2923, 3647, 3730, 3982, 4681, 4765, 4915 |
| SfcI | CTRYAG | 7 cut(s) | 990, 1281, 1644, 2838, 3201, 3264, 3342 |
| Sfr303I | CCGCGG | 2 cut(s) | 72, 3376 |
| SgrBI | CCGCGG | 2 cut(s) | 72, 3376 |
| SinI | GGWCC | 3 cut(s) | 628, 1412, 4325 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 1057, 1379 |
| SmlI | CTYRAG | 5 cut(s) | 506, 2447, 3910, 4334, 5141 |
| SmoI | CTYRAG | 5 cut(s) | 506, 2447, 3910, 4334, 5141 |
| SphI | GCATGC | 1 cut(s) | 4053 |
| SspI | AATATT | 3 cut(s) | 1681, 4298, 5013 |
| SstI | GAGCTC | 1 cut(s) | 2975 |
| StyI | CCWWGG | 4 cut(s) | 115, 1788, 5207, 5385 |
| TaiI | ACGT | 5 cut(s) | 1080, 1918, 1936, 4204, 4860 |
| TaqII | GACCGA | 3 cut(s) | 1038, 1603, 3411 |
| TauI | GCSGC | 3 cut(s) | 432, 3375, 4954 |
| TscAI | CASTG | 8 cut(s) | 308, 487, 1471, 2028, 3556, 4015, 5116, 5238 |
| TseFI | GTSAC | 5 cut(s) | 2131, 2387, 3218, 3729, 4763 |
| Tsp45I | GTSAC | 5 cut(s) | 2131, 2387, 3218, 3729, 4763 |
| TspGWI | ACGGA | 4 cut(s) | 11, 3657, 4202, 5084 |
| TspRI | CASTG | 8 cut(s) | 308, 487, 1471, 2028, 3556, 4015, 5116, 5238 |
| Tth111I | GACNNNGTC | 1 cut(s) | 4469 |
| VneI | GTGCAC | 2 cut(s) | 2610, 5202 |
| VpaK11BI | GGWCC | 3 cut(s) | 628, 1412, 4325 |
| VspI | ATTAAT | 1 cut(s) | 161 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 3610 |
| XapI | RAATTY | 9 cut(s) | 120, 1852, 1963, 2406, 2769, 2815, 3898, 3944, 4396 |
| XbaI | TCTAGA | 1 cut(s) | 4750 |
| XceI | RCATGY | 4 cut(s) | 1727, 2073, 4053, 5352 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 4481, 5195 |
| XmaJI | CCTAGG | 1 cut(s) | 5207 |
| XmiI | GTMKAC | 4 cut(s) | 327, 1303, 2327, 2864 |
| XmnI | GAANNNNTTC | 3 cut(s) | 2754, 2782, 5266 |
| ZraI | GACGTC | 1 cut(s) | 1934 |
| ZrmI | AGTACT | 2 cut(s) | 2096, 3819 |