Rmu_sc0002522.1_g000051

Tumor susceptibility

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002522.1
OG0017444
Physical Location & Seq
Forward (+)
184883 .. 185938
1056 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002522.1_g000051.1.cds

Sequence Viewer

Length: 1056 bp
atggagtgggctacggctatccgtgatctgcttgctaacaatgcagggctgccatattctgatttgtccgcggttgagaatcaattatcgtctctgggattatatcattttcaccttggaatttcccagtttagctacaaggatggatccagcaagacattgatcgggttttctggtttgattgagtctaggaaaaagcataatttggccattgtagggtggttgacccctgattttccgagagcacctccggatatctacctgcttgccaaatatgatgaggttttggaagcaaatcatcagtgggttggaccttgtggcaaggtcgacattccttaccttcagcgatggaaaaatcactccactttatccatcctaattgttgagctagttggtgcttttggttcatggcctcccttcataaagcgccgcaacaataagttgcctccctctgtctcctctactaagatacccgaaggaatcactgataagcacctccgaaaagccctcaagaaccttctttctgattttcccgagtttggggttcagctatgtgagactaatgtgagcactcccattcctttgatcacgggttatattcccattacctatcatggcaagaattacaaggtccagatccaaatatggttggccgggtatccatatcaagcaccacaggtttatattctatgggatcgaaccaagtcttgcataagagaagattcacaatatgtgagttcgactacgggtctagtgcatattccacttctacaaaattgggcttttcgtctgggtcttgaggactactgtactttggtgggactggtttggaatatggtcggcttatttagtcttcacccacctgtgcgctcagggatctgtgtgccttccaattcgggtaccaccagtaattcaaatgaggaggagaggagagaggaggggaatacagagggtgcagtgtctgattatgagaggcaacaaaaagactctgaaaatgaactaaagatggttgaagatattgggtggagaggcttctttgacggttactggaagtga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000813 GO:0001558 GO:0001932 GO:0001933 GO:0003674 GO:0003676 GO:0003677 GO:0003712 GO:0003713 GO:0003714 GO:0005488 GO:0005515 GO:0005575 GO:0005576 GO:0005615 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005768 GO:0005769 GO:0005770 GO:0005771 GO:0005829 GO:0005886 GO:0006355 GO:0006464 GO:0006469 GO:0006508 GO:0006511 GO:0006513 GO:0006807 GO:0006810 GO:0006858 GO:0006887 GO:0006914 GO:0006996 GO:0007032 GO:0007034 GO:0007041 GO:0007049 GO:0007050 GO:0007163 GO:0007175 GO:0007176 GO:0007275 GO:0007399 GO:0008150 GO:0008152 GO:0008285 GO:0008333 GO:0008544 GO:0009056 GO:0009057 GO:0009888 GO:0009889 GO:0009890 GO:0009891 GO:0009892 GO:0009893 GO:0009913 GO:0009966 GO:0009968 GO:0009987 GO:0010008 GO:0010256 GO:0010468 GO:0010469 GO:0010556 GO:0010557 GO:0010558 GO:0010563 GO:0010604 GO:0010605 GO:0010629 GO:0010646 GO:0010648 GO:0012505 GO:0016020 GO:0016032 GO:0016043 GO:0016050 GO:0016192 GO:0016197 GO:0016236 GO:0016322 GO:0016567 GO:0017157 GO:0019058 GO:0019068 GO:0019219 GO:0019220 GO:0019222 GO:0019538 GO:0019899 GO:0019941 GO:0021700 GO:0022008 GO:0022402 GO:0022411 GO:0022607 GO:0023051 GO:0023057 GO:0030011 GO:0030100 GO:0030154 GO:0030163 GO:0030182 GO:0030216 GO:0030374 GO:0030587 GO:0030855 GO:0031090 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031328 GO:0031399 GO:0031400 GO:0031410 GO:0031625 GO:0031974 GO:0031981 GO:0031982 GO:0032182 GO:0032268 GO:0032269 GO:0032446 GO:0032501 GO:0032502 GO:0032509 GO:0032510 GO:0032801 GO:0032879 GO:0032880 GO:0032940 GO:0032984 GO:0032991 GO:0033043 GO:0033673 GO:0035088 GO:0035090 GO:0036211 GO:0036257 GO:0036258 GO:0036452 GO:0039702 GO:0040008 GO:0040012 GO:0040017 GO:0042058 GO:0042059 GO:0042127 GO:0042325 GO:0042326 GO:0042551 GO:0042802 GO:0042803 GO:0043086 GO:0043112 GO:0043130 GO:0043162 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043230 GO:0043231 GO:0043232 GO:0043233 GO:0043405 GO:0043408 GO:0043412 GO:0043549 GO:0043588 GO:0043632 GO:0043900 GO:0043901 GO:0043902 GO:0043903 GO:0043933 GO:0044085 GO:0044087 GO:0044089 GO:0044092 GO:0044126 GO:0044130 GO:0044144 GO:0044146 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044389 GO:0044403 GO:0044419 GO:0044421 GO:0044422 GO:0044424 GO:0044425 GO:0044428 GO:0044433 GO:0044440 GO:0044444 GO:0044446 GO:0044464 GO:0044877 GO:0045570 GO:0045571 GO:0045786 GO:0045807 GO:0045859 GO:0045892 GO:0045921 GO:0045926 GO:0045934 GO:0045935 GO:0045936 GO:0046620 GO:0046621 GO:0046755 GO:0046790 GO:0046903 GO:0046907 GO:0046983 GO:0048306 GO:0048468 GO:0048469 GO:0048513 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048524 GO:0048583 GO:0048585 GO:0048638 GO:0048640 GO:0048666 GO:0048699 GO:0048731 GO:0048856 GO:0048869 GO:0050730 GO:0050732 GO:0050789 GO:0050790 GO:0050792 GO:0050793 GO:0050794 GO:0051046 GO:0051047 GO:0051049 GO:0051050 GO:0051093 GO:0051128 GO:0051130 GO:0051171 GO:0051172 GO:0051173 GO:0051174 GO:0051179 GO:0051222 GO:0051223 GO:0051234 GO:0051239 GO:0051241 GO:0051246 GO:0051248 GO:0051252 GO:0051253 GO:0051254 GO:0051338 GO:0051348 GO:0051603 GO:0051641 GO:0051649 GO:0051703 GO:0051704 GO:0051726 GO:0060255 GO:0060341 GO:0060429 GO:0060627 GO:0061097 GO:0061099 GO:0061245 GO:0061919 GO:0065007 GO:0065009 GO:0070013 GO:0070062 GO:0070201 GO:0070647 GO:0070925 GO:0071695 GO:0071704 GO:0071840 GO:0071900 GO:0071944 GO:0071985 GO:0080090 GO:0090087 GO:0090702 GO:0097159 GO:0097352 GO:0097708 GO:0097734 GO:0098588 GO:0098796 GO:0098805 GO:0099120 GO:0140110 GO:0140112 GO:1901184 GO:1901185 GO:1901363 GO:1901564 GO:1901565 GO:1901575 GO:1902115 GO:1902186 GO:1902188 GO:1902531 GO:1902679 GO:1902680 GO:1903506 GO:1903507 GO:1903508 GO:1903530 GO:1903532 GO:1903541 GO:1903543 GO:1903551 GO:1903561 GO:1903772 GO:1903774 GO:1903827 GO:1903829 GO:1903900 GO:1903902 GO:1904951 GO:1990182 GO:2000026 GO:2000112 GO:2000113 GO:2000272 GO:2000395 GO:2000397 GO:2001141
KEGG Pathways
Metabolic & Signaling
ko04144 ko04217 ko04621 map04144 map04217 map04621
Pfam Domains
Protein Families
Ldh_1_C Ldh_1_N UEV Vps23_core

Protein Analysis

351

Amino Acids

39.7

Weight (kDa)

6.32

Isoelectric Point (pI)

39.38

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 270
Acc65I GGTACC 1 cut(s) 899
AccB1I GGYRCC 1 cut(s) 899
AccI GTMKAC 1 cut(s) 327
AccII CGCG 1 cut(s) 71
AccIII TCCGGA 1 cut(s) 250
AciI CCGC 3 cut(s) 69, 71, 430
AclWI GGATC 5 cut(s) 141, 154, 631, 702, 884
AcoI YGGCCR 2 cut(s) 207, 651
AcsI RAATTY 1 cut(s) 120
AcuI CTGAAG 1 cut(s) 326
AfaI GTAC 2 cut(s) 811, 901
AfiI CCNNNNNNNGG 3 cut(s) 216, 539, 540
AgsI TTSAA 2 cut(s) 915, 1013
AhdI GACNNNNNGTC 1 cut(s) 747
AluBI AGCT 3 cut(s) 135, 388, 550
AluI AGCT 3 cut(s) 135, 388, 550
Alw21I GWGCWC 2 cut(s) 247, 572
Alw26I GTCTC 3 cut(s) 96, 460, 551
AlwI GGATC 5 cut(s) 141, 154, 631, 702, 884
AlwNI CAGNNNCTG 1 cut(s) 962
Ama87I CYCGRG 1 cut(s) 533
Aor13HI TCCGGA 1 cut(s) 250
AoxI GGCC 3 cut(s) 207, 410, 651
ApeKI GCWGC 1 cut(s) 49
ApoI RAATTY 1 cut(s) 120
Asp718I GGTACC 1 cut(s) 899
AspLEI GCGC 2 cut(s) 429, 870
AspS9I GGNCC 2 cut(s) 311, 631
AsuC2I CCSGG 1 cut(s) 655
AsuHPI GGTGA 2 cut(s) 104, 848
AvaI CYCGRG 1 cut(s) 533
AvaII GGWCC 2 cut(s) 311, 631
BalI TGGCCA 1 cut(s) 209
BamHI GGATCC 1 cut(s) 146
BanI GGYRCC 1 cut(s) 899
BbsI GAAGAC 1 cut(s) 845
Bbv12I GWGCWC 2 cut(s) 247, 572
BbvI GCAGC 1 cut(s) 36
BccI CCATC 4 cut(s) 137, 342, 380, 1000
BceAI ACGGC 1 cut(s) 30
BciVI GTATCC 1 cut(s) 669
BclI TGATCA 1 cut(s) 585
BcnI CCSGG 1 cut(s) 655
BcoDI GTCTC 3 cut(s) 96, 460, 551
BfaI CTAG 3 cut(s) 189, 389, 752
BfoI RGCGCY 1 cut(s) 430
BfuAI ACCTGC 1 cut(s) 270
BfuI GTATCC 1 cut(s) 669
BisI GCNGC 2 cut(s) 50, 430
BlsI GCNGC 2 cut(s) 51, 431
Bme1390I CCNGG 1 cut(s) 655
Bme18I GGWCC 2 cut(s) 311, 631
BmeRI GACNNNNNGTC 1 cut(s) 747
BmeT110I CYCGRG 1 cut(s) 533
BmgT120I GGNCC 2 cut(s) 311, 631
BmiI GGNNCC 2 cut(s) 148, 901
BmrFI CCNGG 1 cut(s) 655
BmrI ACTGGG 1 cut(s) 121
BmuI ACTGGG 1 cut(s) 121
BpiI GAAGAC 1 cut(s) 845
BplI GAGNNNNNCTC 2 cut(s) 232, 264
Bpu10I CCTNAGC 1 cut(s) 871
BpuEI CTTGAG 2 cut(s) 494, 818
BpuMI CCSGG 1 cut(s) 655
BsaJI CCNNGG 2 cut(s) 69, 115
BsaWI WCCGGW 1 cut(s) 250
Bsc4I CCNNNNNNNGG 3 cut(s) 216, 539, 540
Bse1I ACTGG 4 cut(s) 127, 828, 906, 1052
BseAI TCCGGA 1 cut(s) 250
BseDI CCNNGG 2 cut(s) 69, 115
BseGI GGATG 2 cut(s) 148, 372
BseLI CCNNNNNNNGG 3 cut(s) 216, 539, 540
BseMII CTCAG 1 cut(s) 885
BseNI ACTGG 4 cut(s) 127, 828, 906, 1052
BseRI GAGGAG 5 cut(s) 448, 935, 938, 943, 950
BseXI GCAGC 1 cut(s) 36
BsgI GTGCAG 1 cut(s) 975
Bsh1236I CGCG 1 cut(s) 71
BshFI GGCC 3 cut(s) 209, 412, 653
BshNI GGYRCC 1 cut(s) 899
BsiHKAI GWGCWC 2 cut(s) 247, 572
BsiHKCI CYCGRG 1 cut(s) 533
BsiSI CCGG 2 cut(s) 251, 654
BslFI GGGAC 1 cut(s) 834
BslI CCNNNNNNNGG 3 cut(s) 216, 539, 540
BsmAI GTCTC 3 cut(s) 96, 460, 551
BsmBI CGTCTC 1 cut(s) 96
BsmFI GGGAC 1 cut(s) 834
BsnI GGCC 3 cut(s) 209, 412, 653
BsoBI CYCGRG 1 cut(s) 533
Bsp1286I GDGCHC 2 cut(s) 247, 572
Bsp13I TCCGGA 1 cut(s) 250
Bsp143I GATC 7 cut(s) 25, 146, 162, 585, 636, 694, 876
BspACI CCGC 3 cut(s) 69, 71, 430
BspANI GGCC 3 cut(s) 209, 412, 653
BspCNI CTCAG 1 cut(s) 884
BspEI TCCGGA 1 cut(s) 250
BspFNI CGCG 1 cut(s) 71
BspLI GGNNCC 2 cut(s) 148, 901
BspMI ACCTGC 1 cut(s) 270
BspPI GGATC 5 cut(s) 141, 154, 631, 702, 884
BspT107I GGYRCC 1 cut(s) 899
BsrI ACTGG 4 cut(s) 127, 828, 906, 1052
BssECI CCNNGG 2 cut(s) 69, 115
BssMI GATC 7 cut(s) 25, 146, 162, 585, 636, 694, 876
BssT1I CCWWGG 1 cut(s) 115
Bst4CI ACNGT 2 cut(s) 809, 1043
BstC8I GCNNGC 2 cut(s) 33, 267
BstDEI CTNAG 2 cut(s) 465, 871
BstDSI CCRYGG 1 cut(s) 69
BstF5I GGATG 2 cut(s) 148, 372
BstFNI CGCG 1 cut(s) 71
BstH2I RGCGCY 1 cut(s) 430
BstHHI GCGC 2 cut(s) 429, 870
BstKTI GATC 7 cut(s) 28, 149, 165, 588, 639, 697, 879
BstMAI GTCTC 3 cut(s) 96, 460, 551
BstMBI GATC 7 cut(s) 25, 146, 162, 585, 636, 694, 876
BstMWI GCNNNNNNNGC 1 cut(s) 41
BstSCI CCNGG 1 cut(s) 653
BstUI CGCG 1 cut(s) 71
BstV1I GCAGC 1 cut(s) 36
BstV2I GAAGAC 1 cut(s) 845
BstX2I RGATCY 3 cut(s) 146, 636, 876
BstYI RGATCY 3 cut(s) 146, 636, 876
BsuI GTATCC 1 cut(s) 669
BsuRI GGCC 3 cut(s) 209, 412, 653
BtgI CCRYGG 1 cut(s) 69
BtgZI GCGATG 1 cut(s) 361
BtsCI GGATG 2 cut(s) 148, 372
BtsI GCAGTG 1 cut(s) 963
BtsIMutI CAGTG 3 cut(s) 308, 483, 963
BveI ACCTGC 1 cut(s) 270
Cac8I GCNNGC 2 cut(s) 33, 267
CaiI CAGNNNCTG 1 cut(s) 962
CfoI GCGC 2 cut(s) 429, 870
Cfr13I GGNCC 2 cut(s) 311, 631
Cfr42I CCGCGG 1 cut(s) 72
Csp6I GTAC 2 cut(s) 810, 900
CviAII CATG 2 cut(s) 408, 614
CviQI GTAC 2 cut(s) 810, 900
DdeI CTNAG 2 cut(s) 465, 871
DpnI GATC 7 cut(s) 27, 148, 164, 587, 638, 696, 878
DpnII GATC 7 cut(s) 25, 146, 162, 585, 636, 694, 876
DriI GACNNNNNGTC 1 cut(s) 747
EaeI YGGCCR 2 cut(s) 207, 651
Eam1105I GACNNNNNGTC 1 cut(s) 747
Eco130I CCWWGG 1 cut(s) 115
Eco32I GATATC 1 cut(s) 256
Eco47I GGWCC 2 cut(s) 311, 631
Eco57I CTGAAG 1 cut(s) 326
Eco88I CYCGRG 1 cut(s) 533
EcoRV GATATC 1 cut(s) 256
EcoT14I CCWWGG 1 cut(s) 115
ErhI CCWWGG 1 cut(s) 115
Esp3I CGTCTC 1 cut(s) 96
FaeI CATG 2 cut(s) 411, 617
FaqI GGGAC 1 cut(s) 834
FatI CATG 2 cut(s) 407, 613
FbaI TGATCA 1 cut(s) 585
FblI GTMKAC 1 cut(s) 327
Fnu4HI GCNGC 2 cut(s) 50, 430
FokI GGATG 2 cut(s) 155, 359
Fsp4HI GCNGC 2 cut(s) 50, 430
FspBI CTAG 3 cut(s) 189, 389, 752
GlaI GCGC 2 cut(s) 428, 869
GluI GCNGC 2 cut(s) 50, 430
HaeII RGCGCY 1 cut(s) 430
HaeIII GGCC 3 cut(s) 209, 412, 653
HapII CCGG 2 cut(s) 251, 654
HhaI GCGC 2 cut(s) 429, 870
Hin1II CATG 2 cut(s) 411, 617
Hin6I GCGC 2 cut(s) 427, 868
HinP1I GCGC 2 cut(s) 427, 868
HincII GTYRAC 2 cut(s) 225, 328
HindII GTYRAC 2 cut(s) 225, 328
HinfI GANTC 5 cut(s) 79, 185, 480, 722, 986
HpaII CCGG 2 cut(s) 251, 654
HphI GGTGA 2 cut(s) 104, 848
Hpy166II GTNNAC 2 cut(s) 225, 328
Hpy188I TCNGA 6 cut(s) 61, 240, 500, 526, 964, 991
Hpy188III TCNNGA 5 cut(s) 251, 511, 533, 634, 797
Hpy8I GTNNAC 2 cut(s) 225, 328
HpyAV CCTTC 5 cut(s) 350, 427, 470, 527, 897
HpyCH4III ACNGT 2 cut(s) 809, 1043
HpyCH4V TGCA 4 cut(s) 44, 711, 757, 956
HpyF10VI GCNNNNNNNGC 1 cut(s) 41
HpyF3I CTNAG 2 cut(s) 465, 871
Hsp92II CATG 2 cut(s) 411, 617
HspAI GCGC 2 cut(s) 427, 868
Kpn2I TCCGGA 1 cut(s) 250
KpnI GGTACC 1 cut(s) 903
Ksp22I TGATCA 1 cut(s) 585
KspI CCGCGG 1 cut(s) 72
Kzo9I GATC 7 cut(s) 25, 146, 162, 585, 636, 694, 876
Lsp1109I GCAGC 1 cut(s) 36
MaeI CTAG 3 cut(s) 189, 389, 752
MaeIII GTNAC 1 cut(s) 1043
MalI GATC 7 cut(s) 27, 148, 164, 587, 638, 696, 878
MboI GATC 7 cut(s) 25, 146, 162, 585, 636, 694, 876
MboII GAAGA 3 cut(s) 731, 845, 1025
MflI RGATCY 3 cut(s) 146, 636, 876
MhlI GDGCHC 2 cut(s) 247, 572
MlsI TGGCCA 1 cut(s) 209
MluCI AATT 8 cut(s) 83, 120, 202, 378, 622, 775, 892, 910
MluNI TGGCCA 1 cut(s) 209
MlyI GAGTC 2 cut(s) 194, 980
MmeI TCCRAC 1 cut(s) 289
Mox20I TGGCCA 1 cut(s) 209
MroI TCCGGA 1 cut(s) 250
MscI TGGCCA 1 cut(s) 209
Msp20I TGGCCA 1 cut(s) 209
MspA1I CMGCKG 1 cut(s) 71
MspI CCGG 2 cut(s) 251, 654
MspR9I CCNGG 1 cut(s) 655
MvnI CGCG 1 cut(s) 71
MwoI GCNNNNNNNGC 1 cut(s) 41
NciI CCSGG 1 cut(s) 655
NdeII GATC 7 cut(s) 25, 146, 162, 585, 636, 694, 876
NlaIII CATG 2 cut(s) 411, 617
NlaIV GGNNCC 2 cut(s) 148, 901
PfeI GAWTC 3 cut(s) 79, 480, 722
PkrI GCNGC 2 cut(s) 51, 431
PleI GAGTC 2 cut(s) 193, 980
PpsI GAGTC 2 cut(s) 193, 980
PspN4I GGNNCC 2 cut(s) 148, 901
PspPI GGNCC 2 cut(s) 311, 631
PstNI CAGNNNCTG 1 cut(s) 962
PsuI RGATCY 3 cut(s) 146, 636, 876
RsaI GTAC 2 cut(s) 811, 901
RsaNI GTAC 2 cut(s) 810, 900
SacII CCGCGG 1 cut(s) 72
SalI GTCGAC 1 cut(s) 326
SatI GCNGC 2 cut(s) 50, 430
Sau3AI GATC 7 cut(s) 25, 146, 162, 585, 636, 694, 876
Sau96I GGNCC 2 cut(s) 311, 631
SchI GAGTC 2 cut(s) 194, 980
ScrFI CCNGG 1 cut(s) 655
SduI GDGCHC 2 cut(s) 247, 572
Sfr303I CCGCGG 1 cut(s) 72
SgrBI CCGCGG 1 cut(s) 72
SinI GGWCC 2 cut(s) 311, 631
SmlI CTYRAG 2 cut(s) 509, 797
SmoI CTYRAG 2 cut(s) 509, 797
Sse9I AATT 8 cut(s) 83, 120, 202, 378, 622, 775, 892, 910
SsiI CCGC 3 cut(s) 69, 71, 430
SspMI CTAG 3 cut(s) 189, 389, 752
StyD4I CCNGG 1 cut(s) 653
StyI CCWWGG 1 cut(s) 115
TaaI ACNGT 2 cut(s) 809, 1043
TaqI TCGA 3 cut(s) 327, 697, 740
TasI AATT 8 cut(s) 83, 120, 202, 378, 622, 775, 892, 910
TatI WGTACW 1 cut(s) 809
TauI GCSGC 1 cut(s) 432
TfiI GAWTC 3 cut(s) 79, 480, 722
TscAI CASTG 3 cut(s) 308, 490, 963
TseI GCWGC 1 cut(s) 49
TspDTI ATGAA 3 cut(s) 396, 409, 1011
TspGWI ACGGA 1 cut(s) 11
TspRI CASTG 3 cut(s) 308, 490, 963
VpaK11BI GGWCC 2 cut(s) 311, 631
XapI RAATTY 1 cut(s) 120
XmiI GTMKAC 1 cut(s) 327
XspI CTAG 3 cut(s) 189, 389, 752
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.