Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

OG0017444

Physical Location & Seq

Genomic Coordinates Reverse (-)

1812288 .. 1815166

Gene Structure 2879 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG017600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1029 bp

ATGGAGTGGGCTACGGCAATCCGTGATCTGCTTGCTAACAATGCAGGGCTGCCATATTCTGATTTGTACGCGGTTGAGAATCAATTATCGTCTCTGGGATTATATCATTTTCACCTTGGAATTTCCCAGTTTAGCTACAAGGATGGATCCAGCAAGACATTGATCGGGTTTTCTGGTTTGATTGAGTCTAGGAAAAAGCATAATTTGGCTATTGTAGGGTGGTTGACCCCTGATTTTCCGAGAGCACCTCCGGATATCTACCTGCTTGCCAAATATGATGAGGTGTTGGAAGCAAATCATCAGTGGGTTAGACCTTGTGGCAAGGTCGACATTCCTTACCTTCAGCAATGGAAAAATCACTCAACTTTATCAATCCTAATTGTTGAGCTAGTTGGTGCTTTTGGTTCATGGCCTCCCTTCATAAAGCGCCGCAACAATAAGTTGACTCCCTCTGTCTCCTCGATACCCACAGGAATCACTGATGAGCACCTCCGAAAAGGCCTCAAGACCCTTATTTCTGATTTTCCCGAGTTGGGGGTTCATCTTCCCATTCCTTTGATCACGGGTTATATTCCCATTACCTATCATGGCAAGAATTACAAGGTCCAGATCCAAATACGGTTGGCCGGGTATCCACATCAAGCACCACAGGTTTATATTCTATGGGATCGAACCAAGTCCTGCATCAGAGAAGATTCACAATATGTGAATTCGACTACTGGTCTAGTGCATATTCCACTTCTACAAAATTGGTCTTTTCGTCTGGGCCTTGAGGACTACTGTACTTTGGTGGGACTGGTTTGGAATATGGTCGGCTTGTTTAGTCTTCACCCACCTGTGCGCTCAGGGATCTGTGTGCCTTCCAATTCGGGTACCACCAGTAATTCAAATGAGGATGAGAAGAGAGAGGAGGAGAATACAGAGGGTGCAGGGTCTGATTATGAGAGGCAACAAAAAAACTCTGAAAATGAACTAAAGATGTTTGAATCATCTGGGGGGAGAGGCTTCTTTGATGGTTACTGGAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000813 GO:0000902 GO:0000904 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005769 GO:0005770 GO:0008150 GO:0009653 GO:0009888 GO:0009987 GO:0010008 GO:0010026 GO:0010090 GO:0010091 GO:0012505 GO:0016020 GO:0016043 GO:0030154 GO:0031090 GO:0031410 GO:0031982 GO:0032182 GO:0032502 GO:0032989 GO:0032991 GO:0036452 GO:0043130 GO:0043226 GO:0043227 GO:0043229 GO:0044422 GO:0044424 GO:0044425 GO:0044433 GO:0044440 GO:0044444 GO:0044446 GO:0044464 GO:0048468 GO:0048856 GO:0048869 GO:0051301 GO:0071840 GO:0090558 GO:0090626 GO:0097708 GO:0098588 GO:0098796 GO:0098805

KEGG Pathways

Metabolic & Signaling

ko04144 map04144

Pfam Domains

Protein Families

UEV Vps23_core

Protein Analysis

342

Amino Acids

38.64

Weight (kDa)

6.6

Isoelectric Point (pI)

38.34

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
UEV	PF05743	36 - 139	1.1e-13	UEV domain
UEV	PF05743	187 - 280	2.6e-11	UEV domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017444)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr6g0252011
rosa_laevigata	RLG00000015413 RLG00000015414
rosa_multiflora	Rmu_sc0002522.1_g000051 Rmu_ssc0000165.1_g000003
rosa_samantha	Rh6AG017000 Rh6AG017600 Rh6AG018200 Rh6AG018400 Rh6AG019100 Rh6BG014500 Rh6CG011500 Rh6DG012800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	270
Acc65I	GGTACC	1 cut(s)	872
AccB1I	GGYRCC	1 cut(s)	872
AccI	GTMKAC	1 cut(s)	327
AccII	CGCG	1 cut(s)	71
AccIII	TCCGGA	1 cut(s)	250
AciI	CCGC	2 cut(s)	71, 430
AclWI	GGATC	5 cut(s)	141, 154, 604, 675, 857
AcoI	YGGCCR	1 cut(s)	624
AcsI	RAATTY	2 cut(s)	120, 709
AcuI	CTGAAG	1 cut(s)	326
AfaI	GTAC	3 cut(s)	68, 784, 874
AfiI	CCNNNNNNNGG	2 cut(s)	533, 534
AgsI	TTSAA	2 cut(s)	888, 986
AhdI	GACNNNNNGTC	1 cut(s)	720
AluBI	AGCT	2 cut(s)	135, 388
AluI	AGCT	2 cut(s)	135, 388
Alw21I	GWGCWC	2 cut(s)	247, 489
Alw26I	GTCTC	2 cut(s)	96, 460
AlwI	GGATC	5 cut(s)	141, 154, 604, 675, 857
AlwNI	CAGNNNCTG	1 cut(s)	935
Ama87I	CYCGRG	1 cut(s)	527
Aor13HI	TCCGGA	1 cut(s)	250
AoxI	GGCC	4 cut(s)	410, 499, 624, 766
ApeKI	GCWGC	1 cut(s)	49
ApoI	RAATTY	2 cut(s)	120, 709
Asp718I	GGTACC	1 cut(s)	872
AspLEI	GCGC	2 cut(s)	429, 843
AspS9I	GGNCC	2 cut(s)	604, 766
AsuC2I	CCSGG	1 cut(s)	628
AsuHPI	GGTGA	2 cut(s)	104, 821
AvaI	CYCGRG	1 cut(s)	527
AvaII	GGWCC	1 cut(s)	604
BamHI	GGATCC	1 cut(s)	146
BanI	GGYRCC	1 cut(s)	872
BbsI	GAAGAC	1 cut(s)	818
Bbv12I	GWGCWC	2 cut(s)	247, 489
BbvI	GCAGC	1 cut(s)	36
BccI	CCATC	2 cut(s)	137, 1007
BceAI	ACGGC	1 cut(s)	30
BciVI	GTATCC	1 cut(s)	642
BclI	TGATCA	1 cut(s)	558
BcnI	CCSGG	1 cut(s)	628
BcoDI	GTCTC	2 cut(s)	96, 460
BfaI	CTAG	3 cut(s)	189, 389, 725
BfoI	RGCGCY	1 cut(s)	430
BfuAI	ACCTGC	1 cut(s)	270
BfuI	GTATCC	1 cut(s)	642
BisI	GCNGC	2 cut(s)	50, 430
BlsI	GCNGC	2 cut(s)	51, 431
Bme1390I	CCNGG	1 cut(s)	628
Bme18I	GGWCC	1 cut(s)	604
BmeRI	GACNNNNNGTC	1 cut(s)	720
BmeT110I	CYCGRG	1 cut(s)	527
BmgT120I	GGNCC	2 cut(s)	604, 766
BmiI	GGNNCC	2 cut(s)	148, 874
BmrFI	CCNGG	1 cut(s)	628
BmrI	ACTGGG	1 cut(s)	121
BmsI	GCATC	1 cut(s)	693
BmuI	ACTGGG	1 cut(s)	121
BpiI	GAAGAC	1 cut(s)	818
BplI	GAGNNNNNCTC	2 cut(s)	232, 264
Bpu10I	CCTNAGC	1 cut(s)	844
BpuEI	CTTGAG	2 cut(s)	488, 791
BpuMI	CCSGG	1 cut(s)	628
BsaJI	CCNNGG	1 cut(s)	115
BsaWI	WCCGGW	1 cut(s)	250
Bsc4I	CCNNNNNNNGG	2 cut(s)	533, 534
Bse1I	ACTGG	5 cut(s)	127, 724, 801, 879, 1025
Bse3DI	GCAATG	1 cut(s)	353
BseAI	TCCGGA	1 cut(s)	250
BseDI	CCNNGG	1 cut(s)	115
BseGI	GGATG	2 cut(s)	148, 901
BseLI	CCNNNNNNNGG	2 cut(s)	533, 534
BseMI	GCAATG	1 cut(s)	353
BseMII	CTCAG	1 cut(s)	858
BseNI	ACTGG	5 cut(s)	127, 724, 801, 879, 1025
BseRI	GAGGAG	3 cut(s)	448, 923, 926
BseXI	GCAGC	1 cut(s)	36
BsgI	GTGCAG	1 cut(s)	948
Bsh1236I	CGCG	1 cut(s)	71
BshFI	GGCC	4 cut(s)	412, 501, 626, 768
BshNI	GGYRCC	1 cut(s)	872
BsiHKAI	GWGCWC	2 cut(s)	247, 489
BsiHKCI	CYCGRG	1 cut(s)	527
BsiSI	CCGG	2 cut(s)	251, 627
BslFI	GGGAC	1 cut(s)	807
BslI	CCNNNNNNNGG	2 cut(s)	533, 534
BsmAI	GTCTC	2 cut(s)	96, 460
BsmBI	CGTCTC	1 cut(s)	96
BsmFI	GGGAC	1 cut(s)	807
BsnI	GGCC	4 cut(s)	412, 501, 626, 768
BsoBI	CYCGRG	1 cut(s)	527
Bsp1286I	GDGCHC	2 cut(s)	247, 489
Bsp13I	TCCGGA	1 cut(s)	250
Bsp143I	GATC	7 cut(s)	25, 146, 162, 558, 609, 667, 849
BspACI	CCGC	2 cut(s)	71, 430
BspANI	GGCC	4 cut(s)	412, 501, 626, 768
BspCNI	CTCAG	1 cut(s)	857
BspEI	TCCGGA	1 cut(s)	250
BspFNI	CGCG	1 cut(s)	71
BspLI	GGNNCC	2 cut(s)	148, 874
BspMI	ACCTGC	1 cut(s)	270
BspPI	GGATC	5 cut(s)	141, 154, 604, 675, 857
BspT107I	GGYRCC	1 cut(s)	872
BsrDI	GCAATG	1 cut(s)	353
BsrI	ACTGG	5 cut(s)	127, 724, 801, 879, 1025
BssECI	CCNNGG	1 cut(s)	115
BssMI	GATC	7 cut(s)	25, 146, 162, 558, 609, 667, 849
BssT1I	CCWWGG	1 cut(s)	115
Bst4CI	ACNGT	2 cut(s)	621, 782
Bst6I	CTCTTC	1 cut(s)	896
BstC8I	GCNNGC	2 cut(s)	33, 267
BstDEI	CTNAG	1 cut(s)	844
BstF5I	GGATG	2 cut(s)	148, 901
BstFNI	CGCG	1 cut(s)	71
BstH2I	RGCGCY	1 cut(s)	430
BstHHI	GCGC	2 cut(s)	429, 843
BstKTI	GATC	7 cut(s)	28, 149, 165, 561, 612, 670, 852
BstMAI	GTCTC	2 cut(s)	96, 460
BstMBI	GATC	7 cut(s)	25, 146, 162, 558, 609, 667, 849
BstMWI	GCNNNNNNNGC	1 cut(s)	41
BstSCI	CCNGG	1 cut(s)	626
BstUI	CGCG	1 cut(s)	71
BstV1I	GCAGC	1 cut(s)	36
BstV2I	GAAGAC	1 cut(s)	818
BstX2I	RGATCY	3 cut(s)	146, 609, 849
BstYI	RGATCY	3 cut(s)	146, 609, 849
BsuI	GTATCC	1 cut(s)	642
BsuRI	GGCC	4 cut(s)	412, 501, 626, 768
BtsCI	GGATG	2 cut(s)	148, 901
BtsIMutI	CAGTG	2 cut(s)	308, 477
BveI	ACCTGC	1 cut(s)	270
Cac8I	GCNNGC	2 cut(s)	33, 267
CaiI	CAGNNNCTG	1 cut(s)	935
CfoI	GCGC	2 cut(s)	429, 843
Cfr13I	GGNCC	2 cut(s)	604, 766
Csp6I	GTAC	3 cut(s)	67, 783, 873
CviAII	CATG	2 cut(s)	408, 587
CviQI	GTAC	3 cut(s)	67, 783, 873
DdeI	CTNAG	1 cut(s)	844
DpnI	GATC	7 cut(s)	27, 148, 164, 560, 611, 669, 851
DpnII	GATC	7 cut(s)	25, 146, 162, 558, 609, 667, 849
DriI	GACNNNNNGTC	1 cut(s)	720
EaeI	YGGCCR	1 cut(s)	624
Eam1104I	CTCTTC	1 cut(s)	896
Eam1105I	GACNNNNNGTC	1 cut(s)	720
EarI	CTCTTC	1 cut(s)	896
Eco130I	CCWWGG	1 cut(s)	115
Eco147I	AGGCCT	1 cut(s)	501
Eco32I	GATATC	1 cut(s)	256
Eco47I	GGWCC	1 cut(s)	604
Eco57I	CTGAAG	1 cut(s)	326
Eco88I	CYCGRG	1 cut(s)	527
EcoRI	GAATTC	1 cut(s)	709
EcoRV	GATATC	1 cut(s)	256
EcoT14I	CCWWGG	1 cut(s)	115
ErhI	CCWWGG	1 cut(s)	115
Esp3I	CGTCTC	1 cut(s)	96
FaeI	CATG	2 cut(s)	411, 590
FaqI	GGGAC	1 cut(s)	807
FatI	CATG	2 cut(s)	407, 586
FbaI	TGATCA	1 cut(s)	558
FblI	GTMKAC	1 cut(s)	327
Fnu4HI	GCNGC	2 cut(s)	50, 430
FokI	GGATG	2 cut(s)	155, 908
Fsp4HI	GCNGC	2 cut(s)	50, 430
FspBI	CTAG	3 cut(s)	189, 389, 725
GlaI	GCGC	2 cut(s)	428, 842
GluI	GCNGC	2 cut(s)	50, 430
HaeII	RGCGCY	1 cut(s)	430
HaeIII	GGCC	4 cut(s)	412, 501, 626, 768
HapII	CCGG	2 cut(s)	251, 627
HhaI	GCGC	2 cut(s)	429, 843
Hin1II	CATG	2 cut(s)	411, 590
Hin6I	GCGC	2 cut(s)	427, 841
HinP1I	GCGC	2 cut(s)	427, 841
HincII	GTYRAC	3 cut(s)	225, 328, 444
HindII	GTYRAC	3 cut(s)	225, 328, 444
HinfI	GANTC	6 cut(s)	79, 185, 445, 474, 695, 986
HpaII	CCGG	2 cut(s)	251, 627
HphI	GGTGA	2 cut(s)	104, 821
Hpy166II	GTNNAC	3 cut(s)	225, 328, 444
Hpy188I	TCNGA	7 cut(s)	61, 240, 494, 520, 689, 937, 964
Hpy188III	TCNNGA	4 cut(s)	251, 505, 527, 607
Hpy8I	GTNNAC	3 cut(s)	225, 328, 444
HpyAV	CCTTC	3 cut(s)	350, 427, 870
HpyCH4III	ACNGT	2 cut(s)	621, 782
HpyCH4V	TGCA	4 cut(s)	44, 684, 730, 929
HpyF10VI	GCNNNNNNNGC	1 cut(s)	41
HpyF3I	CTNAG	1 cut(s)	844
Hsp92II	CATG	2 cut(s)	411, 590
HspAI	GCGC	2 cut(s)	427, 841
Kpn2I	TCCGGA	1 cut(s)	250
KpnI	GGTACC	1 cut(s)	876
Ksp22I	TGATCA	1 cut(s)	558
Kzo9I	GATC	7 cut(s)	25, 146, 162, 558, 609, 667, 849
Lsp1109I	GCAGC	1 cut(s)	36
LweI	GCATC	1 cut(s)	693
MaeI	CTAG	3 cut(s)	189, 389, 725
MaeIII	GTNAC	1 cut(s)	1016
MalI	GATC	7 cut(s)	27, 148, 164, 560, 611, 669, 851
MboI	GATC	7 cut(s)	25, 146, 162, 558, 609, 667, 849
MboII	GAAGA	4 cut(s)	536, 704, 818, 913
MflI	RGATCY	3 cut(s)	146, 609, 849
MhlI	GDGCHC	2 cut(s)	247, 489
MluCI	AATT	9 cut(s)	83, 120, 202, 378, 595, 709, 748, 865, 883
MlyI	GAGTC	2 cut(s)	194, 439
MmeI	TCCRAC	1 cut(s)	267
MroI	TCCGGA	1 cut(s)	250
MspI	CCGG	2 cut(s)	251, 627
MspR9I	CCNGG	1 cut(s)	628
MvnI	CGCG	1 cut(s)	71
MwoI	GCNNNNNNNGC	1 cut(s)	41
NciI	CCSGG	1 cut(s)	628
NdeII	GATC	7 cut(s)	25, 146, 162, 558, 609, 667, 849
NlaIII	CATG	2 cut(s)	411, 590
NlaIV	GGNNCC	2 cut(s)	148, 874
PceI	AGGCCT	1 cut(s)	501
PfeI	GAWTC	4 cut(s)	79, 474, 695, 986
PkrI	GCNGC	2 cut(s)	51, 431
PleI	GAGTC	2 cut(s)	193, 439
PpsI	GAGTC	2 cut(s)	193, 439
PspN4I	GGNNCC	2 cut(s)	148, 874
PspPI	GGNCC	2 cut(s)	604, 766
PstNI	CAGNNNCTG	1 cut(s)	935
PsuI	RGATCY	3 cut(s)	146, 609, 849
RsaI	GTAC	3 cut(s)	68, 784, 874
RsaNI	GTAC	3 cut(s)	67, 783, 873
SalI	GTCGAC	1 cut(s)	326
SatI	GCNGC	2 cut(s)	50, 430
Sau3AI	GATC	7 cut(s)	25, 146, 162, 558, 609, 667, 849
Sau96I	GGNCC	2 cut(s)	604, 766
SchI	GAGTC	2 cut(s)	194, 439
ScrFI	CCNGG	1 cut(s)	628
SduI	GDGCHC	2 cut(s)	247, 489
SfaNI	GCATC	1 cut(s)	693
SinI	GGWCC	1 cut(s)	604
SmlI	CTYRAG	2 cut(s)	503, 770
SmoI	CTYRAG	2 cut(s)	503, 770
Sse9I	AATT	9 cut(s)	83, 120, 202, 378, 595, 709, 748, 865, 883
SseBI	AGGCCT	1 cut(s)	501
SsiI	CCGC	2 cut(s)	71, 430
SspMI	CTAG	3 cut(s)	189, 389, 725
StuI	AGGCCT	1 cut(s)	501
StyD4I	CCNGG	1 cut(s)	626
StyI	CCWWGG	1 cut(s)	115
TaaI	ACNGT	2 cut(s)	621, 782
TaqI	TCGA	4 cut(s)	327, 461, 670, 713
TasI	AATT	9 cut(s)	83, 120, 202, 378, 595, 709, 748, 865, 883
TatI	WGTACW	1 cut(s)	782
TauI	GCSGC	1 cut(s)	432
TfiI	GAWTC	4 cut(s)	79, 474, 695, 986
TscAI	CASTG	2 cut(s)	308, 484
TseI	GCWGC	1 cut(s)	49
TspDTI	ATGAA	4 cut(s)	396, 409, 530, 984
TspGWI	ACGGA	1 cut(s)	11
TspRI	CASTG	2 cut(s)	308, 484
VpaK11BI	GGWCC	1 cut(s)	604
XapI	RAATTY	2 cut(s)	120, 709
XmiI	GTMKAC	1 cut(s)	327
XspI	CTAG	3 cut(s)	189, 389, 725

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.