Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000165.1

Orthogroup ID

OG0017444

Physical Location & Seq

Genomic Coordinates Forward (+)

37232 .. 38278

Gene Structure 1047 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000165.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1047 bp

atgacaatacgcgatctgctagctaacaatgcacagaggctaccgtattctaatttgtgcatggttgagaatcaattattgtatccggggttatatgattttcgcgttggaatttaccggtttagttacaaagatggttccaacaagacattaatcgggttttctggtttgatggagtgtgggaaaaagcataatattgacatagtagggtggttgacccctaattttctgagagcgcctctggatatctacttgcttaccaaatatgatgagatgttgcaaataaatcatcagtgggttagaccttgtggcaaggtcaacattccttacattcaaaagtggaaaaatcactcctctttagccaacctaattgttgagctagttggtgcttttggttcatggcctcccttcgtaaagcgctgcaacaatttaaattcttcaaagttgactgactctgtctctaataacatacccaaaggaatcattgatgaacacctccgaaaatccctcaaggactttctttcttatttttccgagttggcggttcgtctacatgagattaatatgagcactcccattcctttgatcatgggttacattcccatttcctatcatggcaagaattacaaggtcaggatccaaataaggttggccgggtatccacatcaagcaccacaggtttatattctatgggatcgaaccaagtcctgcataaaagaagattcacaatatgtgagttcgactactggtctagtgcatattccacttctacaaaattggttttttcgtccgggtcttaaggactactatactttggtgggactggtttggaatatggtcggcttatttagtcttcacgcatttgtgcgctcagggatctgtgtgccttccaattcgggtaccaccagtaattcaaatgaggatgagatgagagtgaaggagaatacagagggtgcagggtttgattatgagagacaacaaaaagaccgtgaaaatgaacaaaagatgtttgaagagtttgggtggagagacttccttgatgattaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000813 GO:0000902 GO:0000904 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005769 GO:0005770 GO:0008150 GO:0009653 GO:0009888 GO:0009987 GO:0010008 GO:0010026 GO:0010090 GO:0010091 GO:0012505 GO:0016020 GO:0016043 GO:0030154 GO:0031090 GO:0031410 GO:0031982 GO:0032182 GO:0032502 GO:0032989 GO:0032991 GO:0036452 GO:0043130 GO:0043226 GO:0043227 GO:0043229 GO:0044422 GO:0044424 GO:0044425 GO:0044433 GO:0044440 GO:0044444 GO:0044446 GO:0044464 GO:0048468 GO:0048856 GO:0048869 GO:0051301 GO:0071840 GO:0090558 GO:0090626 GO:0097708 GO:0098588 GO:0098796 GO:0098805

KEGG Pathways

Metabolic & Signaling

ko04144 map04144

Pfam Domains

Protein Families

UEV Vps23_core

Protein Analysis

348

Amino Acids

40.26

Weight (kDa)

8.57

Isoelectric Point (pI)

34.62

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017444)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr6g0252011
rosa_laevigata	RLG00000015413 RLG00000015414
rosa_multiflora	Rmu_sc0002522.1_g000051 Rmu_ssc0000165.1_g000003
rosa_samantha	Rh6AG017000 Rh6AG017600 Rh6AG018200 Rh6AG018400 Rh6AG019100 Rh6BG014500 Rh6CG011500 Rh6DG012800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	899
AccB1I	GGYRCC	1 cut(s)	899
AccI	GTMKAC	1 cut(s)	550
AccII	CGCG	2 cut(s)	12, 105
AciI	CCGC	1 cut(s)	542
AclWI	GGATC	4 cut(s)	631, 644, 702, 884
AcoI	YGGCCR	1 cut(s)	651
AcsI	RAATTY	2 cut(s)	111, 433
AfaI	GTAC	1 cut(s)	901
AfeI	AGCGCT	1 cut(s)	419
AflII	CTTAAG	1 cut(s)	797
AgeI	ACCGGT	1 cut(s)	117
AgsI	TTSAA	4 cut(s)	335, 441, 915, 1013
AhdI	GACNNNNNGTC	1 cut(s)	747
AluBI	AGCT	2 cut(s)	23, 379
AluI	AGCT	2 cut(s)	23, 379
Alw21I	GWGCWC	1 cut(s)	572
Alw26I	GTCTC	3 cut(s)	463, 967, 1023
AlwI	GGATC	4 cut(s)	631, 644, 702, 884
Aor51HI	AGCGCT	1 cut(s)	419
AoxI	GGCC	2 cut(s)	401, 651
ApeKI	GCWGC	1 cut(s)	420
ApoI	RAATTY	2 cut(s)	111, 433
AseI	ATTAAT	2 cut(s)	152, 561
AsiGI	ACCGGT	1 cut(s)	117
Asp718I	GGTACC	1 cut(s)	899
AspLEI	GCGC	3 cut(s)	238, 420, 870
AsuC2I	CCSGG	3 cut(s)	87, 655, 792
AsuNHI	GCTAGC	1 cut(s)	19
BamHI	GGATCC	1 cut(s)	636
BanI	GGYRCC	1 cut(s)	899
BbsI	GAAGAC	1 cut(s)	845
Bbv12I	GWGCWC	1 cut(s)	572
BbvI	GCAGC	1 cut(s)	407
BccI	CCATC	2 cut(s)	128, 166
BciVI	GTATCC	2 cut(s)	93, 669
BclI	TGATCA	1 cut(s)	585
BcnI	CCSGG	3 cut(s)	87, 655, 792
BcoDI	GTCTC	3 cut(s)	463, 967, 1023
BfaI	CTAG	3 cut(s)	20, 380, 752
BfoI	RGCGCY	2 cut(s)	239, 421
BfrI	CTTAAG	1 cut(s)	797
BfuI	GTATCC	2 cut(s)	93, 669
BisI	GCNGC	1 cut(s)	421
BlsI	GCNGC	1 cut(s)	422
Bme1390I	CCNGG	3 cut(s)	87, 655, 792
BmeRI	GACNNNNNGTC	1 cut(s)	747
BmiI	GGNNCC	3 cut(s)	139, 638, 901
BmrFI	CCNGG	3 cut(s)	87, 655, 792
BmtI	GCTAGC	1 cut(s)	23
BpiI	GAAGAC	1 cut(s)	845
BplI	GAGNNNNNCTC	2 cut(s)	223, 255
Bpu10I	CCTNAGC	1 cut(s)	871
BpuEI	CTTGAG	1 cut(s)	494
BpuMI	CCSGG	3 cut(s)	87, 655, 792
BsaJI	CCNNGG	1 cut(s)	86
BsaWI	WCCGGW	1 cut(s)	117
Bse118I	RCCGGY	1 cut(s)	117
Bse1I	ACTGG	3 cut(s)	751, 828, 906
BseDI	CCNNGG	1 cut(s)	86
BseGI	GGATG	1 cut(s)	928
BseMII	CTCAG	2 cut(s)	221, 885
BseNI	ACTGG	3 cut(s)	751, 828, 906
BseRI	GAGGAG	1 cut(s)	343
BseXI	GCAGC	1 cut(s)	407
BsgI	GTGCAG	1 cut(s)	975
Bsh1236I	CGCG	2 cut(s)	12, 105
BshFI	GGCC	2 cut(s)	403, 653
BshNI	GGYRCC	1 cut(s)	899
BshTI	ACCGGT	1 cut(s)	117
BsiHKAI	GWGCWC	1 cut(s)	572
BsiSI	CCGG	4 cut(s)	86, 118, 654, 791
BslFI	GGGAC	1 cut(s)	834
BsmAI	GTCTC	3 cut(s)	463, 967, 1023
BsmFI	GGGAC	1 cut(s)	834
BsnI	GGCC	2 cut(s)	403, 653
Bsp1286I	GDGCHC	1 cut(s)	572
Bsp143I	GATC	5 cut(s)	13, 585, 636, 694, 876
BspACI	CCGC	1 cut(s)	542
BspANI	GGCC	2 cut(s)	403, 653
BspCNI	CTCAG	2 cut(s)	222, 884
BspFNI	CGCG	2 cut(s)	12, 105
BspLI	GGNNCC	3 cut(s)	139, 638, 901
BspOI	GCTAGC	1 cut(s)	23
BspPI	GGATC	4 cut(s)	631, 644, 702, 884
BspT107I	GGYRCC	1 cut(s)	899
BspTI	CTTAAG	1 cut(s)	797
BsrFI	RCCGGY	1 cut(s)	117
BsrI	ACTGG	3 cut(s)	751, 828, 906
BssAI	RCCGGY	1 cut(s)	117
BssECI	CCNNGG	1 cut(s)	86
BssMI	GATC	5 cut(s)	13, 585, 636, 694, 876
Bst4CI	ACNGT	2 cut(s)	45, 989
Bst6I	CTCTTC	1 cut(s)	1008
BstAFI	CTTAAG	1 cut(s)	797
BstC8I	GCNNGC	1 cut(s)	21
BstDEI	CTNAG	2 cut(s)	230, 871
BstF5I	GGATG	1 cut(s)	928
BstFNI	CGCG	2 cut(s)	12, 105
BstH2I	RGCGCY	2 cut(s)	239, 421
BstHHI	GCGC	3 cut(s)	238, 420, 870
BstKTI	GATC	5 cut(s)	16, 588, 639, 697, 879
BstMAI	GTCTC	3 cut(s)	463, 967, 1023
BstMBI	GATC	5 cut(s)	13, 585, 636, 694, 876
BstMWI	GCNNNNNNNGC	1 cut(s)	29
BstSCI	CCNGG	3 cut(s)	85, 653, 790
BstUI	CGCG	2 cut(s)	12, 105
BstV1I	GCAGC	1 cut(s)	407
BstV2I	GAAGAC	1 cut(s)	845
BstX2I	RGATCY	2 cut(s)	636, 876
BstYI	RGATCY	2 cut(s)	636, 876
BsuI	GTATCC	2 cut(s)	93, 669
BsuRI	GGCC	2 cut(s)	403, 653
BtsCI	GGATG	1 cut(s)	928
BtsIMutI	CAGTG	1 cut(s)	299
Cac8I	GCNNGC	1 cut(s)	21
CfoI	GCGC	3 cut(s)	238, 420, 870
Cfr10I	RCCGGY	1 cut(s)	117
Csp6I	GTAC	1 cut(s)	900
CspAI	ACCGGT	1 cut(s)	117
CviAII	CATG	5 cut(s)	61, 399, 554, 589, 614
CviJI	RGCY	7 cut(s)	23, 40, 362, 379, 403, 653, 843
CviKI_1	RGCY	7 cut(s)	23, 40, 362, 379, 403, 653, 843
CviQI	GTAC	1 cut(s)	900
DdeI	CTNAG	2 cut(s)	230, 871
DpnI	GATC	5 cut(s)	15, 587, 638, 696, 878
DpnII	GATC	5 cut(s)	13, 585, 636, 694, 876
DraI	TTTAAA	1 cut(s)	432
DriI	GACNNNNNGTC	1 cut(s)	747
EaeI	YGGCCR	1 cut(s)	651
Eam1104I	CTCTTC	1 cut(s)	1008
Eam1105I	GACNNNNNGTC	1 cut(s)	747
EarI	CTCTTC	1 cut(s)	1008
Eco32I	GATATC	1 cut(s)	247
Eco47III	AGCGCT	1 cut(s)	419
EcoRV	GATATC	1 cut(s)	247
FaeI	CATG	5 cut(s)	64, 402, 557, 592, 617
FaqI	GGGAC	1 cut(s)	834
FatI	CATG	5 cut(s)	60, 398, 553, 588, 613
FbaI	TGATCA	1 cut(s)	585
FblI	GTMKAC	1 cut(s)	550
Fnu4HI	GCNGC	1 cut(s)	421
FokI	GGATG	1 cut(s)	935
Fsp4HI	GCNGC	1 cut(s)	421
FspBI	CTAG	3 cut(s)	20, 380, 752
GlaI	GCGC	3 cut(s)	237, 419, 869
GluI	GCNGC	1 cut(s)	421
HaeII	RGCGCY	2 cut(s)	239, 421
HaeIII	GGCC	2 cut(s)	403, 653
HapII	CCGG	4 cut(s)	86, 118, 654, 791
HhaI	GCGC	3 cut(s)	238, 420, 870
Hin1II	CATG	5 cut(s)	64, 402, 557, 592, 617
Hin6I	GCGC	3 cut(s)	236, 418, 868
HinP1I	GCGC	3 cut(s)	236, 418, 868
HincII	GTYRAC	3 cut(s)	216, 319, 447
HindII	GTYRAC	3 cut(s)	216, 319, 447
HinfI	GANTC	4 cut(s)	70, 452, 480, 722
HpaII	CCGG	4 cut(s)	86, 118, 654, 791
Hpy166II	GTNNAC	4 cut(s)	216, 319, 447, 551
Hpy188I	TCNGA	3 cut(s)	231, 500, 535
Hpy188III	TCNNGA	2 cut(s)	242, 634
Hpy8I	GTNNAC	4 cut(s)	216, 319, 447, 551
HpyAV	CCTTC	3 cut(s)	418, 897, 931
HpyCH4III	ACNGT	2 cut(s)	45, 989
HpyCH4V	TGCA	7 cut(s)	32, 60, 280, 423, 711, 757, 956
HpyF10VI	GCNNNNNNNGC	1 cut(s)	29
HpyF3I	CTNAG	2 cut(s)	230, 871
Hsp92II	CATG	5 cut(s)	64, 402, 557, 592, 617
HspAI	GCGC	3 cut(s)	236, 418, 868
KpnI	GGTACC	1 cut(s)	903
Ksp22I	TGATCA	1 cut(s)	585
Kzo9I	GATC	5 cut(s)	13, 585, 636, 694, 876
Lsp1109I	GCAGC	1 cut(s)	407
MaeI	CTAG	3 cut(s)	20, 380, 752
MaeIII	GTNAC	2 cut(s)	125, 593
MalI	GATC	5 cut(s)	15, 587, 638, 696, 878
MboI	GATC	5 cut(s)	13, 585, 636, 694, 876
MboII	GAAGA	4 cut(s)	429, 731, 845, 1025
MflI	RGATCY	2 cut(s)	636, 876
MhlI	GDGCHC	1 cut(s)	572
MlyI	GAGTC	1 cut(s)	446
MmeI	TCCRAC	2 cut(s)	88, 165
MnlI	CCTC	8 cut(s)	30, 249, 364, 414, 506, 518, 913, 943
MseI	TTAA	5 cut(s)	152, 431, 561, 798, 1045
MspCI	CTTAAG	1 cut(s)	797
MspI	CCGG	4 cut(s)	86, 118, 654, 791
MspR9I	CCNGG	3 cut(s)	87, 655, 792
MvnI	CGCG	2 cut(s)	12, 105
MwoI	GCNNNNNNNGC	1 cut(s)	29
NciI	CCSGG	3 cut(s)	87, 655, 792
NdeII	GATC	5 cut(s)	13, 585, 636, 694, 876
NheI	GCTAGC	1 cut(s)	19
NlaIII	CATG	5 cut(s)	64, 402, 557, 592, 617
NlaIV	GGNNCC	3 cut(s)	139, 638, 901
PfeI	GAWTC	3 cut(s)	70, 480, 722
PflFI	GACNNNGTC	1 cut(s)	455
PinAI	ACCGGT	1 cut(s)	117
PkrI	GCNGC	1 cut(s)	422
PleI	GAGTC	1 cut(s)	446
PpsI	GAGTC	1 cut(s)	446
PshBI	ATTAAT	2 cut(s)	152, 561
PspN4I	GGNNCC	3 cut(s)	139, 638, 901
PsuI	RGATCY	2 cut(s)	636, 876
PsyI	GACNNNGTC	1 cut(s)	455
RsaI	GTAC	1 cut(s)	901
RsaNI	GTAC	1 cut(s)	900
SaqAI	TTAA	5 cut(s)	152, 431, 561, 798, 1045
SatI	GCNGC	1 cut(s)	421
Sau3AI	GATC	5 cut(s)	13, 585, 636, 694, 876
SchI	GAGTC	1 cut(s)	446
ScrFI	CCNGG	3 cut(s)	87, 655, 792
SduI	GDGCHC	1 cut(s)	572
SetI	ASST	9 cut(s)	25, 307, 318, 369, 381, 498, 633, 650, 681
SmiI	ATTTAAAT	1 cut(s)	432
SmlI	CTYRAG	2 cut(s)	509, 797
SmoI	CTYRAG	2 cut(s)	509, 797
SsiI	CCGC	1 cut(s)	542
SspI	AATATT	1 cut(s)	196
SspMI	CTAG	3 cut(s)	20, 380, 752
StyD4I	CCNGG	3 cut(s)	85, 653, 790
SwaI	ATTTAAAT	1 cut(s)	432
TaaI	ACNGT	2 cut(s)	45, 989
TaqI	TCGA	2 cut(s)	697, 740
TfiI	GAWTC	3 cut(s)	70, 480, 722
Tru1I	TTAA	5 cut(s)	152, 431, 561, 798, 1045
Tru9I	TTAA	5 cut(s)	152, 431, 561, 798, 1045
TscAI	CASTG	1 cut(s)	299
TseI	GCWGC	1 cut(s)	420
TspDTI	ATGAA	3 cut(s)	387, 504, 1011
TspRI	CASTG	1 cut(s)	299
Tth111I	GACNNNGTC	1 cut(s)	455
Vha464I	CTTAAG	1 cut(s)	797
VspI	ATTAAT	2 cut(s)	152, 561
XapI	RAATTY	2 cut(s)	111, 433
XmiI	GTMKAC	1 cut(s)	550
XspI	CTAG	3 cut(s)	20, 380, 752

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.