RchiOBHm_Chr6g0266861

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0014273
Physical Location & Seq
Forward (+)
23374216 .. 23380169
5954 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ23934

Sequence Viewer

Length: 2328 bp
ATGTATAAAATTTGGTTGGAGAGCGCCACAGTAGAACCAACAATTGGTGCATTCAAGTTGGACATGCGCGTTCCAAGCGGTACCAACCTCTGTAATTGGCATTTGAAGCTCAAAGAGCTATCAACCAATGGAAAATGGGTAGAATTACTCTGCCACTACCATCAAGTAAACAAAGCTGGACTTCACCCAACACACTATTCAGACTTCCCTCCAATTCTCAAAGCATGTTCAAACCTCCTTTCCTACTCCTACGGAAAATCTATACATGGGTGTTTGATCAAAACCGGGTGTGATTCATACACTTCCATTGCTAACTCCACCATGGACTTTTACATCAAAACCAGGGACCCAGATTCTGCATCGGCTGTTTTTAACTCTATGAGGTGGAGAGATCAAGTTTCTTGGAATATTATGGTTTATGGGAGCCTTGATCTGGGGAATTTAGAACAAGGGTTATGGTGGTTTAACAAGGCCAGGGTTTCGGTTTGTGGGTTTCAACCCAATACTTCTACTCTGGTACTCGTAATTCAAGCCTGTCGTTGGCTTAGAGCAGCTATATATGAAGGACTGAAAGTACATGGTTACGTGATTCGAGGCGGGTTTTGTTATATATCTTCAGTTCAGAACTCATTGTTGAGTCTCTATGCAGAAGATGATGACATGGAGAGTGCACACAAGCTGTTCGACGAAATGTCTGAGAGAGATGTCATCTCTTGGAGTGTGATGATAGGAGGTTGTGTGCATTGCGGGGAAGCTCAAAACGGCATGAAGATGTTCCGAAAGATGGTATGTGAGCTTGGCATTGAACCAGATGGCGTAACTGCGGTCAGTGTTCTTAAAGGGTGCACTAGTTTGAGGGACTTGACCATGGGAACATCGCTCCATGGGTTGGTAATCTATAGAGGGTTAGATTCTGATCTGTTTGTTGGAAACTCTTTAATTGATATGTATGCCAAGTGTGGTGATGCGGATTCTGCCTTCAAAGTTTTTGAGGAGTTGCCGCAAAGAAATAGGGTCTCATGGAATTCTATGTTGTCTGCATTTGTCCATAATGAGAGGTACATGGATGCCCTGTCGCTGTTTTATTCTATGGGGAAGGAAGGTATCAACGCAGATGAAGTGACTCTGGTGAATATTCTTCAAACATGCAAGCATTTGCACCTAGGTCATTCCAAGTCGGTGCACTGTGTAACAATCAGGTGGCGATTTGAATCAAATGAGTTGCTCCTGAATTCGCTCATTGATGCTTATGCAAAGTGTAATAGTATCGAGCTTGCATGGAAACTTTTTGAAAGGATGAAGAAAAGAGATGTGGTTTCGTGGAGCACTATGATTGCAGGGTTTACACAATGTGGCAGACCTGATCAAGCAATTGCCATCTTCGGAGAGATGACAAGGCTGCAGGCACAGGATGATCAGAAGCCCAATGAGATTACACTCATAAATCTTTTTGAAGCTTGTTCAGTTTCAGCCGAATTGAAATGGGCCAAAGGGGCACATGGAATTGCTATTCGAAGAGCTTTGTCAACTGCAGATCAAGTAGCCATTGGAACTGCAATTGTTGACATGTACTCGAAATGCGGGGCAATAGGAGAATCAAGAAAGGTGTTCGACCAGATTTCCGAAAAAAACATTGTGTCATGGAGTGCCATGATAGCTGCATATGGCATGAATGGTCTTGCACATGAAGCTCTAGCTTTGGTTGAGGAAATGAAGCTGTATGGTGCAAAGCCAAATGCAGTGACCACCCTTTCTATGCTATCTGCCTGCAGCCATGGAGGCTTAGTTGAAGAAGGGCTCTCCTTGTTCAACTCACTTGTTCAAGTTTATGGAATTGAGCCAAGATTGGAACATTATGCGTGTGTAGTTGACATGTTGGGCCGAGCAGGAAAGCTCCATATGGCTATGGATTTTATCAATAACATTCCAGAAGGTTTAAAGGTCACTGGGGAAAATGCTGCTTGGAGTGCATTATTGAGTGCTTGTAGAAGCTATAGCAATAGTGACGTTGGCGCAGTAGCTGCTTCTCATGTCCTTGAGTTAGAGCCTGAAAGTTCAACTGGGTATTTACTTGCCTCAAGTATTTATGCAGCAGGTGGGTTGTGGGTTGATGCTGCAAGTATTAGAAGAATGGTGAAAGAAAAAGAGGTGAAGGTTGTTGCTGGTTATAGCTTAGTTTATGTTGATAACAAGGCATGTAGATTTGTTGCTGGGGATATTGATTGCCATTCACTAGCTGCTGGAGAGATGCACTCTATAGTTGAGCTGTTGCATGCTTGTATGAAGACTGAAAAGAGAAATGCTGGTAATTTTGATATAATTGATTAG

Protein Analysis

775

Amino Acids

85.68

Weight (kDa)

6.07

Isoelectric Point (pI)

35.01

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_2 PF13041 234 - 282 3.6e-06 PPR repeat family
PPR_2 PF13041 337 - 383 4e-07 PPR repeat family
PPR PF01535 339 - 369 7.3e-06 PPR repeat
PPR_2 PF13041 410 - 438 3e-06 PPR repeat family
PPR PF01535 411 - 437 8.1e-06 PPR repeat
PPR_2 PF13041 436 - 487 3.6e-06 PPR repeat family
PPR PF01535 439 - 466 7.6e-06 PPR repeat
PPR_2 PF13041 543 - 591 1.6e-09 PPR repeat family
PPR PF01535 546 - 575 5.4e-06 PPR repeat
E_motif PF20431 665 - 726 8.3e-09 E motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0014273)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G17210
fragaria_vesca FvH4_2g09980 FvH4_2g09980
malus_domestica MD05G1134800.v1.1 MD10G1139900.v1.1
prunus_persica Prupe.8G178700_v2.0.a1
pyrus_communis pycom10g11880
rosa_chinensis RchiOBHm_Chr6g0266861
rosa_laevigata RLG00000014068
rosa_multiflora Rmu_sc0013959.1_g000001
rosa_roxburghii Rroxscaffold_7G00201400
rosa_rugosa Rorug06G0027700
rosa_samantha Rh6AG148700 Rh6BG149800 Rh6CG144700 Rh6DG133900
rosa_wichuraiana Rw6G012870

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 2084
Acc36I ACCTGC 1 cut(s) 2084
Acc65I GGTACC 1 cut(s) 80
AccB1I GGYRCC 1 cut(s) 80
AccB7I CCANNNNNTGG 2 cut(s) 44, 889
AccII CGCG 1 cut(s) 69
AciI CCGC 7 cut(s) 78, 597, 747, 824, 968, 1001, 1581
AcsI RAATTY 4 cut(s) 9, 439, 1024, 1231
AcuI CTGAAG 1 cut(s) 600
AdeI CACNNNGTG 1 cut(s) 1352
AfaI GTAC 5 cut(s) 82, 519, 576, 1061, 1571
AfiI CCNNNNNNNGG 5 cut(s) 44, 433, 540, 784, 889
AflIII ACRYGT 2 cut(s) 1566, 1872
AhdI GACNNNNNGTC 1 cut(s) 691
AhlI ACTAGT 1 cut(s) 848
AjnI CCWGG 2 cut(s) 341, 473
AjuI GAANNNNNNNTTGG 4 cut(s) 27, 59, 181, 213
Alw21I GWGCWC 4 cut(s) 673, 848, 1185, 1328
Alw26I GTCTC 2 cut(s) 644, 1021
Alw44I GTGCAC 3 cut(s) 669, 844, 1181
AlwNI CAGNNNCTG 2 cut(s) 356, 2021
AoxI GGCC 3 cut(s) 471, 1485, 1879
ApaLI GTGCAC 3 cut(s) 669, 844, 1181
ApeKI GCWGC 9 cut(s) 551, 1399, 1658, 1770, 1958, 2021, 2090, 2114, 2237
ApoI RAATTY 4 cut(s) 9, 439, 1024, 1231
Asp700I GAANNNNTTC 1 cut(s) 773
Asp718I GGTACC 1 cut(s) 80
AspA2I CCTAGG 1 cut(s) 1162
AspLEI GCGC 3 cut(s) 26, 69, 2015
AspS9I GGNCC 3 cut(s) 346, 1485, 1879
AsuC2I CCSGG 1 cut(s) 286
AsuHPI GGTGA 5 cut(s) 176, 974, 1141, 2146, 2161
AsuII TTCGAA 1 cut(s) 1513
AvaII GGWCC 1 cut(s) 346
AvrII CCTAGG 1 cut(s) 1162
BaeGI GKGCMC 4 cut(s) 673, 848, 1185, 1498
BanI GGYRCC 1 cut(s) 80
BanII GRGCYC 1 cut(s) 1800
BbsI GAAGAC 1 cut(s) 2291
Bbv12I GWGCWC 4 cut(s) 673, 848, 1185, 1328
BbvI GCAGC 9 cut(s) 563, 1386, 1645, 1782, 1945, 2008, 2101, 2102, 2224
BccI CCATC 4 cut(s) 168, 778, 806, 1385
BceAI ACGGC 1 cut(s) 778
BciT130I CCWGG 2 cut(s) 343, 475
BclI TGATCA 3 cut(s) 276, 1363, 1414
BcnI CCSGG 1 cut(s) 286
BcoDI GTCTC 2 cut(s) 644, 1021
BcuI ACTAGT 1 cut(s) 848
BfaI CTAG 4 cut(s) 849, 1163, 1694, 2234
BfmI CTRYAG 6 cut(s) 898, 1400, 1530, 1768, 1993, 2256
BfoI RGCGCY 1 cut(s) 27
BfuAI ACCTGC 1 cut(s) 2084
BglI GCCNNNNNGGC 2 cut(s) 1493, 1779
BlnI CCTAGG 1 cut(s) 1162
Bme1390I CCNGG 3 cut(s) 286, 343, 475
Bme18I GGWCC 1 cut(s) 346
BmeRI GACNNNNNGTC 1 cut(s) 691
BmgT120I GGNCC 3 cut(s) 346, 1485, 1879
BmiI GGNNCC 4 cut(s) 82, 347, 348, 425
BmrFI CCNGG 3 cut(s) 286, 343, 475
BmrI ACTGGG 2 cut(s) 1956, 2070
BmsI GCATC 6 cut(s) 368, 955, 1057, 1234, 2101, 2238
BmuI ACTGGG 2 cut(s) 1956, 2070
BpiI GAAGAC 1 cut(s) 2291
BplI GAGNNNNNCTC 2 cut(s) 2237, 2269
BpmI CTGGAG 1 cut(s) 2262
Bpu14I TTCGAA 1 cut(s) 1513
BpuEI CTTGAG 2 cut(s) 2057, 2062
BpuMI CCSGG 1 cut(s) 286
BsaAI YACGTR 1 cut(s) 586
BsaBI GATNNNNATC 2 cut(s) 915, 1210
BsaI GGTCTC 1 cut(s) 1021
BsaJI CCNNGG 7 cut(s) 321, 342, 474, 867, 883, 1162, 1774
BsaXI ACNNNNNCTCC 4 cut(s) 723, 753, 1770, 1800
Bsc4I CCNNNNNNNGG 5 cut(s) 44, 433, 540, 784, 889
Bse1I ACTGG 2 cut(s) 1951, 2065
Bse3DI GCAATG 2 cut(s) 306, 742
Bse8I GATNNNNATC 2 cut(s) 915, 1210
BseBI CCWGG 2 cut(s) 343, 475
BseDI CCNNGG 7 cut(s) 321, 342, 474, 867, 883, 1162, 1774
BseGI GGATG 3 cut(s) 1072, 1302, 1417
BseJI GATNNNNATC 2 cut(s) 915, 1210
BseLI CCNNNNNNNGG 5 cut(s) 44, 433, 540, 784, 889
BseMI GCAATG 2 cut(s) 306, 742
BseMII CTCAG 1 cut(s) 687
BseNI ACTGG 2 cut(s) 1951, 2065
BseRI GAGGAG 1 cut(s) 1007
BseSI GKGCMC 4 cut(s) 673, 848, 1185, 1498
BseXI GCAGC 9 cut(s) 563, 1386, 1645, 1782, 1945, 2008, 2101, 2102, 2224
BseYI CCCAGC 1 cut(s) 2210
Bsh1236I CGCG 1 cut(s) 69
BshFI GGCC 3 cut(s) 473, 1487, 1881
BshNI GGYRCC 1 cut(s) 80
BsiHKAI GWGCWC 4 cut(s) 673, 848, 1185, 1328
BsiSI CCGG 1 cut(s) 285
BslFI GGGAC 2 cut(s) 359, 872
BslI CCNNNNNNNGG 5 cut(s) 44, 433, 540, 784, 889
BsmAI GTCTC 2 cut(s) 644, 1021
BsmFI GGGAC 2 cut(s) 359, 872
BsmI GAATGC 1 cut(s) 50
BsnI GGCC 3 cut(s) 473, 1487, 1881
Bso31I GGTCTC 1 cut(s) 1021
Bsp119I TTCGAA 1 cut(s) 1513
Bsp1286I GDGCHC 6 cut(s) 673, 848, 1185, 1328, 1498, 1800
Bsp143I GATC 7 cut(s) 276, 391, 430, 916, 1363, 1414, 1534
Bsp19I CCATGG 4 cut(s) 321, 867, 883, 1774
BspACI CCGC 7 cut(s) 78, 597, 747, 824, 968, 1001, 1581
BspANI GGCC 3 cut(s) 473, 1487, 1881
BspCNI CTCAG 1 cut(s) 688
BspFNI CGCG 1 cut(s) 69
BspLI GGNNCC 4 cut(s) 82, 347, 348, 425
BspMAI CTGCAG 3 cut(s) 1404, 1534, 1772
BspMI ACCTGC 1 cut(s) 2084
BspQI GCTCTTC 1 cut(s) 1510
BspT104I TTCGAA 1 cut(s) 1513
BspT107I GGYRCC 1 cut(s) 80
BspTNI GGTCTC 1 cut(s) 1021
BsrDI GCAATG 2 cut(s) 306, 742
BsrI ACTGG 2 cut(s) 1951, 2065
BssECI CCNNGG 7 cut(s) 321, 342, 474, 867, 883, 1162, 1774
BssMI GATC 7 cut(s) 276, 391, 430, 916, 1363, 1414, 1534
BssT1I CCWWGG 5 cut(s) 321, 867, 883, 1162, 1774
Bst2UI CCWGG 2 cut(s) 343, 475
Bst4CI ACNGT 2 cut(s) 31, 1187
Bst6I CTCTTC 1 cut(s) 1510
BstAPI GCANNNNNTGC 1 cut(s) 2021
BstBAI YACGTR 1 cut(s) 586
BstBI TTCGAA 1 cut(s) 1513
BstC8I GCNNGC 5 cut(s) 1151, 1275, 1404, 1768, 2274
BstDEI CTNAG 4 cut(s) 545, 696, 1783, 2173
BstDSI CCRYGG 4 cut(s) 321, 867, 883, 1774
BstF5I GGATG 3 cut(s) 1072, 1302, 1417
BstFNI CGCG 1 cut(s) 69
BstH2I RGCGCY 1 cut(s) 27
BstHHI GCGC 3 cut(s) 26, 69, 2015
BstKTI GATC 7 cut(s) 279, 394, 433, 919, 1366, 1417, 1537
BstMAI GTCTC 2 cut(s) 644, 1021
BstMBI GATC 7 cut(s) 276, 391, 430, 916, 1363, 1414, 1534
BstNI CCWGG 2 cut(s) 343, 475
BstNSI RCATGY 7 cut(s) 67, 228, 1149, 1570, 1876, 2199, 2276
BstSCI CCNGG 3 cut(s) 284, 341, 473
BstSFI CTRYAG 6 cut(s) 898, 1400, 1530, 1768, 1993, 2256
BstSLI GKGCMC 4 cut(s) 673, 848, 1185, 1498
BstUI CGCG 1 cut(s) 69
BstV1I GCAGC 9 cut(s) 563, 1386, 1645, 1782, 1945, 2008, 2101, 2102, 2224
BstV2I GAAGAC 1 cut(s) 2291
BsuRI GGCC 3 cut(s) 473, 1487, 1881
BtgI CCRYGG 4 cut(s) 321, 867, 883, 1774
BtgZI GCGATG 1 cut(s) 861
BtsCI GGATG 3 cut(s) 1072, 1302, 1417
BtsI GCAGTG 1 cut(s) 1746
BtsIMutI CAGTG 4 cut(s) 835, 1183, 1746, 1944
BveI ACCTGC 1 cut(s) 2084
Cac8I GCNNGC 5 cut(s) 1151, 1275, 1404, 1768, 2274
CaiI CAGNNNCTG 2 cut(s) 356, 2021
CfoI GCGC 3 cut(s) 26, 69, 2015
Cfr13I GGNCC 3 cut(s) 346, 1485, 1879
Csp6I GTAC 5 cut(s) 81, 518, 575, 1060, 1570
CviQI GTAC 5 cut(s) 81, 518, 575, 1060, 1570
DdeI CTNAG 4 cut(s) 545, 696, 1783, 2173
DpnI GATC 7 cut(s) 278, 393, 432, 918, 1365, 1416, 1536
DpnII GATC 7 cut(s) 276, 391, 430, 916, 1363, 1414, 1534
DraI TTTAAA 1 cut(s) 1938
DraIII CACNNNGTG 1 cut(s) 1352
DriI GACNNNNNGTC 1 cut(s) 691
Eam1104I CTCTTC 1 cut(s) 1510
Eam1105I GACNNNNNGTC 1 cut(s) 691
EarI CTCTTC 1 cut(s) 1510
Eco130I CCWWGG 5 cut(s) 321, 867, 883, 1162, 1774
Eco24I GRGCYC 1 cut(s) 1800
Eco31I GGTCTC 1 cut(s) 1021
Eco47I GGWCC 1 cut(s) 346
Eco57I CTGAAG 1 cut(s) 600
EcoO109I RGGNCCY 1 cut(s) 346
EcoRI GAATTC 2 cut(s) 1024, 1231
EcoRII CCWGG 2 cut(s) 341, 473
EcoT14I CCWWGG 5 cut(s) 321, 867, 883, 1162, 1774
EcoT38I GRGCYC 1 cut(s) 1800
ErhI CCWWGG 5 cut(s) 321, 867, 883, 1162, 1774
FalI AAGNNNNNCTT 2 cut(s) 165, 197
FaqI GGGAC 2 cut(s) 359, 872
FauI CCCGC 3 cut(s) 590, 740, 1574
FauNDI CATATG 2 cut(s) 1663, 1899
FbaI TGATCA 3 cut(s) 276, 1363, 1414
FokI GGATG 3 cut(s) 1079, 1309, 1424
FriOI GRGCYC 1 cut(s) 1800
FspBI CTAG 4 cut(s) 849, 1163, 1694, 2234
GlaI GCGC 3 cut(s) 25, 68, 2014
GsaI CCCAGC 1 cut(s) 2214
GsuI CTGGAG 1 cut(s) 2262
HaeII RGCGCY 1 cut(s) 27
HaeIII GGCC 3 cut(s) 473, 1487, 1881
HapII CCGG 1 cut(s) 285
HhaI GCGC 3 cut(s) 26, 69, 2015
Hin6I GCGC 3 cut(s) 24, 67, 2013
HinP1I GCGC 3 cut(s) 24, 67, 2013
HincII GTYRAC 3 cut(s) 1527, 1564, 1870
HindII GTYRAC 3 cut(s) 1527, 1564, 1870
HindIII AAGCTT 1 cut(s) 1455
HinfI GANTC 9 cut(s) 293, 353, 589, 637, 911, 971, 1123, 1211, 1595
HpaII CCGG 1 cut(s) 285
HphI GGTGA 5 cut(s) 176, 974, 1141, 2146, 2161
Hpy166II GTNNAC 8 cut(s) 169, 671, 846, 1183, 1344, 1527, 1564, 1870
Hpy188I TCNGA 8 cut(s) 202, 624, 697, 779, 916, 1385, 1419, 1624
Hpy188III TCNNGA 3 cut(s) 1228, 1599, 1928
Hpy8I GTNNAC 8 cut(s) 169, 671, 846, 1183, 1344, 1527, 1564, 1870
Hpy99I CGWCG 1 cut(s) 689
HpyAV CCTTC 7 cut(s) 557, 988, 1090, 1094, 1787, 1925, 2146
HpyCH4III ACNGT 2 cut(s) 31, 1187
HpyCH4IV ACGT 2 cut(s) 585, 2007
HpyF3I CTNAG 4 cut(s) 545, 696, 1783, 2173
HpySE526I ACGT 2 cut(s) 585, 2007
HspAI GCGC 3 cut(s) 24, 67, 2013
KflI GGGWCCC 1 cut(s) 346
KpnI GGTACC 1 cut(s) 84
Ksp22I TGATCA 3 cut(s) 276, 1363, 1414
Kzo9I GATC 7 cut(s) 276, 391, 430, 916, 1363, 1414, 1534
LguI GCTCTTC 1 cut(s) 1510
LmnI GCTCC 5 cut(s) 423, 885, 1230, 1323, 1899
Lsp1109I GCAGC 9 cut(s) 563, 1386, 1645, 1782, 1945, 2008, 2101, 2102, 2224
LweI GCATC 6 cut(s) 368, 955, 1057, 1234, 2101, 2238
MaeI CTAG 4 cut(s) 849, 1163, 1694, 2234
MaeII ACGT 2 cut(s) 585, 2007
MaeIII GTNAC 7 cut(s) 581, 817, 1120, 1189, 1741, 1942, 2003
MalI GATC 7 cut(s) 278, 393, 432, 918, 1365, 1416, 1536
MboI GATC 7 cut(s) 276, 391, 430, 916, 1363, 1414, 1534
MfeI CAATTG 3 cut(s) 42, 1371, 1557
MhlI GDGCHC 6 cut(s) 673, 848, 1185, 1328, 1498, 1800
MlyI GAGTC 2 cut(s) 646, 1117
MmeI TCCRAC 2 cut(s) 39, 907
MroXI GAANNNNTTC 1 cut(s) 773
MseI TTAA 5 cut(s) 372, 465, 837, 938, 1937
MslI CAYNNNNRTG 1 cut(s) 770
MspI CCGG 1 cut(s) 285
MspR9I CCNGG 3 cut(s) 286, 343, 475
MunI CAATTG 3 cut(s) 42, 1371, 1557
Mva1269I GAATGC 1 cut(s) 50
MvaI CCWGG 2 cut(s) 343, 475
MvnI CGCG 1 cut(s) 69
NciI CCSGG 1 cut(s) 286
NcoI CCATGG 4 cut(s) 321, 867, 883, 1774
NdeI CATATG 2 cut(s) 1663, 1899
NdeII GATC 7 cut(s) 276, 391, 430, 916, 1363, 1414, 1534
NlaIV GGNNCC 4 cut(s) 82, 347, 348, 425
NmeAIII GCCGAG 1 cut(s) 1907
NmuCI GTSAC 4 cut(s) 1120, 1741, 1942, 2003
NspI RCATGY 7 cut(s) 67, 228, 1149, 1570, 1876, 2199, 2276
NspV TTCGAA 1 cut(s) 1513
PaeI GCATGC 1 cut(s) 2276
PaqCI CACCTGC 1 cut(s) 2084
PciI ACATGT 2 cut(s) 1566, 1872
PciSI GCTCTTC 1 cut(s) 1510
PctI GAATGC 1 cut(s) 50
PdmI GAANNNNTTC 1 cut(s) 773
PfeI GAWTC 7 cut(s) 293, 353, 589, 911, 971, 1211, 1595
PflMI CCANNNNNTGG 2 cut(s) 44, 889
PleI GAGTC 2 cut(s) 645, 1117
PpsI GAGTC 2 cut(s) 645, 1117
Ppu21I YACGTR 1 cut(s) 586
PpuMI RGGWCCY 1 cut(s) 346
PscI ACATGT 2 cut(s) 1566, 1872
Psp5II RGGWCCY 1 cut(s) 346
Psp6I CCWGG 2 cut(s) 341, 473
PspFI CCCAGC 1 cut(s) 2210
PspGI CCWGG 2 cut(s) 341, 473
PspN4I GGNNCC 4 cut(s) 82, 347, 348, 425
PspPI GGNCC 3 cut(s) 346, 1485, 1879
PspPPI RGGWCCY 1 cut(s) 346
PstI CTGCAG 3 cut(s) 1404, 1534, 1772
PstNI CAGNNNCTG 2 cut(s) 356, 2021
RsaI GTAC 5 cut(s) 82, 519, 576, 1061, 1571
RsaNI GTAC 5 cut(s) 81, 518, 575, 1060, 1570
RseI CAYNNNNRTG 1 cut(s) 770
SapI GCTCTTC 1 cut(s) 1510
SaqAI TTAA 5 cut(s) 372, 465, 837, 938, 1937
Sau3AI GATC 7 cut(s) 276, 391, 430, 916, 1363, 1414, 1534
Sau96I GGNCC 3 cut(s) 346, 1485, 1879
SchI GAGTC 2 cut(s) 646, 1117
ScrFI CCNGG 3 cut(s) 286, 343, 475
SduI GDGCHC 6 cut(s) 673, 848, 1185, 1328, 1498, 1800
SfaNI GCATC 6 cut(s) 368, 955, 1057, 1234, 2101, 2238
SfcI CTRYAG 6 cut(s) 898, 1400, 1530, 1768, 1993, 2256
SfuI TTCGAA 1 cut(s) 1513
SinI GGWCC 1 cut(s) 346
SmiMI CAYNNNNRTG 1 cut(s) 770
SmlI CTYRAG 2 cut(s) 2036, 2077
SmoI CTYRAG 2 cut(s) 2036, 2077
SpeI ACTAGT 1 cut(s) 848
SphI GCATGC 1 cut(s) 2276
SsiI CCGC 7 cut(s) 78, 597, 747, 824, 968, 1001, 1581
SspI AATATT 2 cut(s) 409, 1135
SspMI CTAG 4 cut(s) 849, 1163, 1694, 2234
StyD4I CCNGG 3 cut(s) 284, 341, 473
StyI CCWWGG 5 cut(s) 321, 867, 883, 1162, 1774
TaaI ACNGT 2 cut(s) 31, 1187
TaiI ACGT 2 cut(s) 588, 2010
TaqI TCGA 6 cut(s) 592, 684, 1269, 1513, 1574, 1611
TatI WGTACW 2 cut(s) 574, 1569
TauI GCSGC 1 cut(s) 1003
TfiI GAWTC 7 cut(s) 293, 353, 589, 911, 971, 1211, 1595
Tru1I TTAA 5 cut(s) 372, 465, 837, 938, 1937
Tru9I TTAA 5 cut(s) 372, 465, 837, 938, 1937
TscAI CASTG 4 cut(s) 835, 1190, 1746, 1951
TseFI GTSAC 4 cut(s) 1120, 1741, 1942, 2003
TseI GCWGC 9 cut(s) 551, 1399, 1658, 1770, 1958, 2021, 2090, 2114, 2237
Tsp45I GTSAC 4 cut(s) 1120, 1741, 1942, 2003
TspDTI ATGAA 9 cut(s) 285, 576, 782, 1131, 1313, 1685, 1701, 1727, 2297
TspGWI ACGGA 1 cut(s) 267
TspRI CASTG 4 cut(s) 835, 1190, 1746, 1951
Van91I CCANNNNNTGG 2 cut(s) 44, 889
VneI GTGCAC 3 cut(s) 669, 844, 1181
VpaK11BI GGWCC 1 cut(s) 346
XapI RAATTY 4 cut(s) 9, 439, 1024, 1231
XceI RCATGY 7 cut(s) 67, 228, 1149, 1570, 1876, 2199, 2276
XmaJI CCTAGG 1 cut(s) 1162
XmnI GAANNNNTTC 1 cut(s) 773
XspI CTAG 4 cut(s) 849, 1163, 1694, 2234
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.