Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0013959.1

Orthogroup ID

OG0014273

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 1226

Gene Structure 1225 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0013959.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1225 bp

atgcgcgttccaagcagtaccaacctctgtaattggcatttgaagctcaaagacttatcatccaatggaaaatgggtagaattactctgccattaccatcaagtaaacaaagctggacttcacccaacacactattcagtcttctgtccaattctcaaagcatgttcaaacctcctttcctactcctacggaaaatctatacatgggtgtttgataaaaaatggatgtgattcctacacttccattgctaactccaccatggacttttacatcaaaaccagggacccagattctgcattgggtgtttttaactctatgagggggagagatcaagtttcttggaatattatggtttatgggagccttgatctggggaatttagaacaagggttatggtggtttaacaaggccagggtttcggtttgtgggtttcaacccaatacttctactctggtccttgtgattcaagcctttcgtcggcttagagataaatatgaaggactgaaagtacatggttacgtgattcaaggcgggttttgttatatatcttcagttcagaactcgttgttgagtctctatgcagaagatgatgacctgcagagtgcacacaagctgttcgacgaaatgtctgagagagatgtcatctcttggagtgtgatgataggaggttatgtgcattgcgaggaagctcaaatcggtatgaagatgttccgaaagatggtatgtgagcttggcattgaaccagatggcgtaactgcggtcagcgttcttaaagggtgcactagtttgagggacttgaccatgggaacatcgctccatgggttggtaatctatagagggttagattctgatctgtttgttggaaactctttaattgatatgtatgccaagtgtagtgatgcggattctgcctttaaagtttttgaggagttgccgcaaagaaatagggtctcatggaattctatgttgtctgcatttgtccataatgagaggtacatggatgccctgtcgctgttttattctatggggaaggaaggtatcaatgcagatgaagtgactctggtgaatattcttcaaacatgcaagcatttgcacctaggtcattccaagtcggtgcactgtgtaacaatcaggtggcgatttgaatcaaatgagttgctcctgaattcgctcattgatgcttatgcaaagtgtaatagtatcgagcttgcatggaaactttttg

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MatE PPR PPR_2

Protein Analysis

408

Amino Acids

46.09

Weight (kDa)

6.72

Isoelectric Point (pI)

38.18

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014273)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G17210
fragaria_vesca	FvH4_2g09980 FvH4_2g09980
malus_domestica	MD05G1134800.v1.1 MD10G1139900.v1.1
prunus_persica	Prupe.8G178700_v2.0.a1
pyrus_communis	pycom10g11880
rosa_chinensis	RchiOBHm_Chr6g0266861
rosa_laevigata	RLG00000014068
rosa_multiflora	Rmu_sc0013959.1_g000001
rosa_roxburghii	Rroxscaffold_7G00201400
rosa_rugosa	Rorug06G0027700
rosa_samantha	Rh6AG148700 Rh6BG149800 Rh6CG144700 Rh6DG133900
rosa_wichuraiana	Rw6G012870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	603
AccB7I	CCANNNNNTGG	1 cut(s)	823
AccII	CGCG	1 cut(s)	6
AciI	CCGC	4 cut(s)	531, 758, 902, 935
AcsI	RAATTY	3 cut(s)	376, 958, 1165
AcuI	CTGAAG	1 cut(s)	534
AfaI	GTAC	3 cut(s)	19, 510, 995
AfiI	CCNNNNNNNGG	4 cut(s)	370, 477, 718, 823
AgsI	TTSAA	8 cut(s)	43, 168, 434, 467, 527, 740, 1076, 1145
AhdI	GACNNNNNGTC	1 cut(s)	625
AhlI	ACTAGT	1 cut(s)	782
AjnI	CCWGG	2 cut(s)	278, 410
AjuI	GAANNNNNNNTTGG	2 cut(s)	118, 150
AluBI	AGCT	6 cut(s)	46, 113, 613, 689, 730, 1207
AluI	AGCT	6 cut(s)	46, 113, 613, 689, 730, 1207
Alw21I	GWGCWC	3 cut(s)	607, 782, 1119
Alw26I	GTCTC	2 cut(s)	578, 955
Alw44I	GTGCAC	3 cut(s)	603, 778, 1115
AlwNI	CAGNNNCTG	1 cut(s)	293
AoxI	GGCC	1 cut(s)	408
ApaLI	GTGCAC	3 cut(s)	603, 778, 1115
ApoI	RAATTY	3 cut(s)	376, 958, 1165
Asp700I	GAANNNNTTC	1 cut(s)	707
AspA2I	CCTAGG	1 cut(s)	1096
AspLEI	GCGC	1 cut(s)	6
AspS9I	GGNCC	2 cut(s)	283, 454
AsuHPI	GGTGA	2 cut(s)	113, 1075
AvaII	GGWCC	2 cut(s)	283, 454
AvrII	CCTAGG	1 cut(s)	1096
BaeGI	GKGCMC	3 cut(s)	607, 782, 1119
BbsI	GAAGAC	1 cut(s)	133
Bbv12I	GWGCWC	3 cut(s)	607, 782, 1119
BccI	CCATC	3 cut(s)	105, 712, 740
BciT130I	CCWGG	2 cut(s)	280, 412
BcoDI	GTCTC	2 cut(s)	578, 955
BcuI	ACTAGT	1 cut(s)	782
BfaI	CTAG	2 cut(s)	783, 1097
BfmI	CTRYAG	2 cut(s)	596, 832
BfuAI	ACCTGC	1 cut(s)	603
BisI	GCNGC	1 cut(s)	935
BlnI	CCTAGG	1 cut(s)	1096
BlsI	GCNGC	1 cut(s)	936
Bme1390I	CCNGG	2 cut(s)	280, 412
Bme18I	GGWCC	2 cut(s)	283, 454
BmeRI	GACNNNNNGTC	1 cut(s)	625
BmgT120I	GGNCC	2 cut(s)	283, 454
BmiI	GGNNCC	3 cut(s)	284, 285, 362
BmrFI	CCNGG	2 cut(s)	280, 412
BmsI	GCATC	3 cut(s)	889, 991, 1168
BpiI	GAAGAC	1 cut(s)	133
BsaAI	YACGTR	1 cut(s)	520
BsaBI	GATNNNNATC	2 cut(s)	849, 1144
BsaI	GGTCTC	1 cut(s)	955
BsaJI	CCNNGG	6 cut(s)	258, 279, 411, 801, 817, 1096
BsaXI	ACNNNNNCTCC	2 cut(s)	657, 687
Bsc4I	CCNNNNNNNGG	4 cut(s)	370, 477, 718, 823
Bse3DI	GCAATG	2 cut(s)	243, 676
Bse8I	GATNNNNATC	2 cut(s)	849, 1144
BseBI	CCWGG	2 cut(s)	280, 412
BseDI	CCNNGG	6 cut(s)	258, 279, 411, 801, 817, 1096
BseGI	GGATG	3 cut(s)	59, 230, 1006
BseJI	GATNNNNATC	2 cut(s)	849, 1144
BseLI	CCNNNNNNNGG	4 cut(s)	370, 477, 718, 823
BseMI	GCAATG	2 cut(s)	243, 676
BseMII	CTCAG	1 cut(s)	621
BseRI	GAGGAG	1 cut(s)	941
BseSI	GKGCMC	3 cut(s)	607, 782, 1119
Bsh1236I	CGCG	1 cut(s)	6
BshFI	GGCC	1 cut(s)	410
BsiHKAI	GWGCWC	3 cut(s)	607, 782, 1119
BslFI	GGGAC	2 cut(s)	296, 806
BslI	CCNNNNNNNGG	4 cut(s)	370, 477, 718, 823
BsmAI	GTCTC	2 cut(s)	578, 955
BsmFI	GGGAC	2 cut(s)	296, 806
BsnI	GGCC	1 cut(s)	410
Bso31I	GGTCTC	1 cut(s)	955
Bsp1286I	GDGCHC	3 cut(s)	607, 782, 1119
Bsp143I	GATC	3 cut(s)	328, 367, 850
Bsp19I	CCATGG	3 cut(s)	258, 801, 817
BspACI	CCGC	4 cut(s)	531, 758, 902, 935
BspANI	GGCC	1 cut(s)	410
BspCNI	CTCAG	1 cut(s)	622
BspFNI	CGCG	1 cut(s)	6
BspLI	GGNNCC	3 cut(s)	284, 285, 362
BspMAI	CTGCAG	1 cut(s)	600
BspMI	ACCTGC	1 cut(s)	603
BspTNI	GGTCTC	1 cut(s)	955
BsrDI	GCAATG	2 cut(s)	243, 676
BssECI	CCNNGG	6 cut(s)	258, 279, 411, 801, 817, 1096
BssMI	GATC	3 cut(s)	328, 367, 850
BssT1I	CCWWGG	4 cut(s)	258, 801, 817, 1096
Bst2UI	CCWGG	2 cut(s)	280, 412
Bst4CI	ACNGT	1 cut(s)	1121
BstBAI	YACGTR	1 cut(s)	520
BstC8I	GCNNGC	2 cut(s)	1085, 1209
BstDEI	CTNAG	2 cut(s)	482, 630
BstDSI	CCRYGG	3 cut(s)	258, 801, 817
BstF5I	GGATG	3 cut(s)	59, 230, 1006
BstFNI	CGCG	1 cut(s)	6
BstHHI	GCGC	1 cut(s)	6
BstKTI	GATC	3 cut(s)	331, 370, 853
BstMAI	GTCTC	2 cut(s)	578, 955
BstMBI	GATC	3 cut(s)	328, 367, 850
BstMWI	GCNNNNNNNGC	3 cut(s)	12, 43, 908
BstNI	CCWGG	2 cut(s)	280, 412
BstNSI	RCATGY	2 cut(s)	165, 1083
BstSCI	CCNGG	2 cut(s)	278, 410
BstSFI	CTRYAG	2 cut(s)	596, 832
BstSLI	GKGCMC	3 cut(s)	607, 782, 1119
BstUI	CGCG	1 cut(s)	6
BstV2I	GAAGAC	1 cut(s)	133
BsuRI	GGCC	1 cut(s)	410
BtgI	CCRYGG	3 cut(s)	258, 801, 817
BtgZI	GCGATG	1 cut(s)	795
BtsCI	GGATG	3 cut(s)	59, 230, 1006
BtsIMutI	CAGTG	1 cut(s)	1117
BveI	ACCTGC	1 cut(s)	603
Cac8I	GCNNGC	2 cut(s)	1085, 1209
CaiI	CAGNNNCTG	1 cut(s)	293
CfoI	GCGC	1 cut(s)	6
Cfr13I	GGNCC	2 cut(s)	283, 454
Csp6I	GTAC	3 cut(s)	18, 509, 994
CviQI	GTAC	3 cut(s)	18, 509, 994
DdeI	CTNAG	2 cut(s)	482, 630
DpnI	GATC	3 cut(s)	330, 369, 852
DpnII	GATC	3 cut(s)	328, 367, 850
DraI	TTTAAA	1 cut(s)	916
DriI	GACNNNNNGTC	1 cut(s)	625
Eam1105I	GACNNNNNGTC	1 cut(s)	625
Eco130I	CCWWGG	4 cut(s)	258, 801, 817, 1096
Eco31I	GGTCTC	1 cut(s)	955
Eco47I	GGWCC	2 cut(s)	283, 454
Eco57I	CTGAAG	1 cut(s)	534
EcoO109I	RGGNCCY	1 cut(s)	283
EcoRI	GAATTC	2 cut(s)	958, 1165
EcoRII	CCWGG	2 cut(s)	278, 410
EcoT14I	CCWWGG	4 cut(s)	258, 801, 817, 1096
ErhI	CCWWGG	4 cut(s)	258, 801, 817, 1096
FalI	AAGNNNNNCTT	2 cut(s)	102, 134
FaqI	GGGAC	2 cut(s)	296, 806
FauI	CCCGC	1 cut(s)	524
Fnu4HI	GCNGC	1 cut(s)	935
FokI	GGATG	3 cut(s)	46, 237, 1013
Fsp4HI	GCNGC	1 cut(s)	935
FspBI	CTAG	2 cut(s)	783, 1097
GlaI	GCGC	1 cut(s)	5
GluI	GCNGC	1 cut(s)	935
HaeIII	GGCC	1 cut(s)	410
HhaI	GCGC	1 cut(s)	6
Hin6I	GCGC	1 cut(s)	4
HinP1I	GCGC	1 cut(s)	4
HinfI	GANTC	9 cut(s)	230, 290, 463, 523, 571, 845, 905, 1057, 1145
HphI	GGTGA	2 cut(s)	113, 1075
Hpy166II	GTNNAC	4 cut(s)	106, 605, 780, 1117
Hpy188I	TCNGA	4 cut(s)	558, 631, 713, 850
Hpy188III	TCNNGA	1 cut(s)	1162
Hpy8I	GTNNAC	4 cut(s)	106, 605, 780, 1117
Hpy99I	CGWCG	2 cut(s)	480, 623
HpyAV	CCTTC	3 cut(s)	491, 1024, 1028
HpyCH4III	ACNGT	1 cut(s)	1121
HpyCH4IV	ACGT	1 cut(s)	519
HpyF10VI	GCNNNNNNNGC	3 cut(s)	12, 43, 908
HpyF3I	CTNAG	2 cut(s)	482, 630
HpySE526I	ACGT	1 cut(s)	519
HspAI	GCGC	1 cut(s)	4
KflI	GGGWCCC	1 cut(s)	283
Kzo9I	GATC	3 cut(s)	328, 367, 850
LmnI	GCTCC	3 cut(s)	360, 819, 1164
LweI	GCATC	3 cut(s)	889, 991, 1168
MaeI	CTAG	2 cut(s)	783, 1097
MaeII	ACGT	1 cut(s)	519
MaeIII	GTNAC	4 cut(s)	515, 751, 1054, 1123
MalI	GATC	3 cut(s)	330, 369, 852
MboI	GATC	3 cut(s)	328, 367, 850
MboII	GAAGA	5 cut(s)	133, 540, 596, 715, 1064
MhlI	GDGCHC	3 cut(s)	607, 782, 1119
MluCI	AATT	7 cut(s)	31, 80, 150, 376, 873, 958, 1165
MlyI	GAGTC	2 cut(s)	580, 1051
MmeI	TCCRAC	1 cut(s)	841
MnlI	CCTC	9 cut(s)	35, 182, 312, 659, 676, 783, 830, 919, 984
MroXI	GAANNNNTTC	1 cut(s)	707
MseI	TTAA	5 cut(s)	309, 402, 771, 872, 915
MspR9I	CCNGG	2 cut(s)	280, 412
MvaI	CCWGG	2 cut(s)	280, 412
MvnI	CGCG	1 cut(s)	6
MwoI	GCNNNNNNNGC	3 cut(s)	12, 43, 908
NcoI	CCATGG	3 cut(s)	258, 801, 817
NdeII	GATC	3 cut(s)	328, 367, 850
NlaIV	GGNNCC	3 cut(s)	284, 285, 362
NmuCI	GTSAC	1 cut(s)	1054
NspI	RCATGY	2 cut(s)	165, 1083
PdmI	GAANNNNTTC	1 cut(s)	707
PfeI	GAWTC	7 cut(s)	230, 290, 463, 523, 845, 905, 1145
PflMI	CCANNNNNTGG	1 cut(s)	823
PkrI	GCNGC	1 cut(s)	936
PleI	GAGTC	2 cut(s)	579, 1051
PpsI	GAGTC	2 cut(s)	579, 1051
Ppu21I	YACGTR	1 cut(s)	520
PpuMI	RGGWCCY	1 cut(s)	283
Psp5II	RGGWCCY	1 cut(s)	283
Psp6I	CCWGG	2 cut(s)	278, 410
PspGI	CCWGG	2 cut(s)	278, 410
PspN4I	GGNNCC	3 cut(s)	284, 285, 362
PspPI	GGNCC	2 cut(s)	283, 454
PspPPI	RGGWCCY	1 cut(s)	283
PstI	CTGCAG	1 cut(s)	600
PstNI	CAGNNNCTG	1 cut(s)	293
RsaI	GTAC	3 cut(s)	19, 510, 995
RsaNI	GTAC	3 cut(s)	18, 509, 994
SaqAI	TTAA	5 cut(s)	309, 402, 771, 872, 915
SatI	GCNGC	1 cut(s)	935
Sau3AI	GATC	3 cut(s)	328, 367, 850
Sau96I	GGNCC	2 cut(s)	283, 454
SchI	GAGTC	2 cut(s)	580, 1051
ScrFI	CCNGG	2 cut(s)	280, 412
SduI	GDGCHC	3 cut(s)	607, 782, 1119
SfaNI	GCATC	3 cut(s)	889, 991, 1168
SfcI	CTRYAG	2 cut(s)	596, 832
SinI	GGWCC	2 cut(s)	283, 454
SpeI	ACTAGT	1 cut(s)	782
Sse9I	AATT	7 cut(s)	31, 80, 150, 376, 873, 958, 1165
SsiI	CCGC	4 cut(s)	531, 758, 902, 935
SspI	AATATT	2 cut(s)	346, 1069
SspMI	CTAG	2 cut(s)	783, 1097
StyD4I	CCNGG	2 cut(s)	278, 410
StyI	CCWWGG	4 cut(s)	258, 801, 817, 1096
TaaI	ACNGT	1 cut(s)	1121
TaiI	ACGT	1 cut(s)	522
TaqI	TCGA	2 cut(s)	618, 1203
TasI	AATT	7 cut(s)	31, 80, 150, 376, 873, 958, 1165
TatI	WGTACW	1 cut(s)	508
TauI	GCSGC	1 cut(s)	937
TfiI	GAWTC	7 cut(s)	230, 290, 463, 523, 845, 905, 1145
Tru1I	TTAA	5 cut(s)	309, 402, 771, 872, 915
Tru9I	TTAA	5 cut(s)	309, 402, 771, 872, 915
TscAI	CASTG	1 cut(s)	1124
TseFI	GTSAC	1 cut(s)	1054
Tsp45I	GTSAC	1 cut(s)	1054
TspDTI	ATGAA	3 cut(s)	510, 716, 1065
TspGWI	ACGGA	1 cut(s)	204
TspRI	CASTG	1 cut(s)	1124
Van91I	CCANNNNNTGG	1 cut(s)	823
VneI	GTGCAC	3 cut(s)	603, 778, 1115
VpaK11BI	GGWCC	2 cut(s)	283, 454
XapI	RAATTY	3 cut(s)	376, 958, 1165
XceI	RCATGY	2 cut(s)	165, 1083
XmaJI	CCTAGG	1 cut(s)	1096
XmnI	GAANNNNTTC	1 cut(s)	707
XspI	CTAG	2 cut(s)	783, 1097

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.