RchiOBHm_Chr6g0280821
ERF Family

Belongs to the protein kinase superfamily

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
Physical Location & Seq
Reverse (-)
44234033 .. 44237504
3472 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ25184

Sequence Viewer

Length: 1272 bp
ATGGGGAATTGCTGGTTTTCTTCTTCTTCTTCAGCTGAAGACCCAACACCAACTACTACTGGTCATCTCAGTACAGTGCCGAGTAGCATATCTCAATCAATTAGTAATGCCACATCCACTTCCGTGGGGAGCACTATATCAAGGAATAGCCAGTTTTCGGAGAGAAGTGGTGATGAGACCTGTCCAGACGGGCAGATCCTACCTGCCGCAAACTTGAGGATCTTCAGTTACCTAGAATTGAAGAGTGCAACTAGAAACTTTAGATCAGACACGGTGCTTGGGGAAGGAGGTTTTGGGAAGGTCTATAAAGGCTGGCTCGAGGAGAGGGCACCGGCCAAGTCTGGAAAGACAACTGTAATTGCTGTAAAGAAATTGAATTCAGAGAGCTTGCAAGGTTTTGAGGAATGGCAGTCAGAGGTGAATTTCTTGGGGCGACTTTCTCATCCTAATCTTGTAAAGCTGCTGGGATACTGTTGGGAGGAGAAAGAACTGCTGCTCATCTACGAGTTCATGCAAAAAGGAAGCTTGGAAAACCATCTTTTTGGAAGGGGTTCAGTTGTTCAGCCACTTCCATGGGATATACGGCTTAAAGTTGCAATAGGAGCAGCTCGAGGCCTAGCATTTTTGCATACATCAGAGAAGCAAGTAATCTATAGAGATTTCAAAGCTTCCAATATATTACTTGACGGGTCCTTTACCGCCAAGATATCCGACTTTGGCTTGGCAAAATTTGGTCCTTCAGAGAGTCAATCACACGTGACAACCCGGGTCATGGGCACATATGGTTACGCTGCTCCTGAGTATGTTGCCACAGGGCATCTCTATGTGAAGAGTGATGTGTACGGTTTTGGTGTTGTGTTGGTTGAGATCTTAACAGGCTTACGGGCACTTGATACGAATCGTCCAAGTGGAAAACATAATCTTGTGGAGTGGGTAAAACCATATTTATCAGATAAAAGAAAATTGAAAGGCATTATGGACCCTCGACTGGAGGGAAAGTATCCAGCCAAAGCTGCATTCCGAATTTCTCAGCTTGCTCTAAAATGCATTGAATCTGAACACAAAAACCGGCCATCAATGAAGCTTGTTGTGGAGACTTTGGAAAGGATCGAATCTGTCAATGAACATATAAGGGAGCCTAGGATTCGTTCGACTCATTCTACTCATCCTATGGCTCATCGCCAAGGTCAGGCACCTTTGCACCATCGTTCTCCACTTCACCCCAGGTCAGATGGAAATCAAAACTACCAACAGTCACCTCGAATGAGGTAA

Protein Analysis

423

Amino Acids

47.12

Weight (kDa)

9.35

Isoelectric Point (pI)

41.6

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pkinase PF00069 89 - 365 7.8e-42 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 90 - 367 1.6e-47 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0015783)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G17220 AT2G17220
fragaria_vesca FvH4_2g16680
malus_domestica MD05G1135000.v1.1 MD10G1140500.v1.1
prunus_persica Prupe.8G178900_v2.0.a1
pyrus_communis pycom05g13160 pycom10g11910
rosa_chinensis RchiOBHm_Chr6g0280821
rosa_multiflora Rmu_co8480431.1_g000001
rosa_roxburghii Rroxscaffold_7G00187600
rosa_rugosa Rorug06G0134700
rosa_samantha Rh6BG249600 Rh6DG242400
rosa_wichuraiana Rw6G021440

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 211
AccB1I GGYRCC 2 cut(s) 328, 1192
AciI CCGC 2 cut(s) 207, 699
AclWI GGATC 3 cut(s) 190, 227, 1115
AcoI YGGCCR 2 cut(s) 333, 1070
AcsI RAATTY 4 cut(s) 376, 421, 728, 1023
AcuI CTGAAG 4 cut(s) 15, 57, 208, 723
AcvI CACGTG 1 cut(s) 757
AfaI GTAC 2 cut(s) 73, 842
AfiI CCNNNNNNNGG 4 cut(s) 157, 772, 988, 1189
AflIII ACRYGT 1 cut(s) 754
AgsI TTSAA 5 cut(s) 241, 376, 664, 967, 1052
AjnI CCWGG 1 cut(s) 1223
AjuI GAANNNNNNNTTGG 4 cut(s) 276, 308, 1001, 1033
AleI CACNNNNGTG 1 cut(s) 122
AluBI AGCT 9 cut(s) 35, 387, 460, 525, 608, 668, 1013, 1033, 1084
AluI AGCT 9 cut(s) 35, 387, 460, 525, 608, 668, 1013, 1033, 1084
Alw21I GWGCWC 1 cut(s) 134
Alw26I GTCTC 2 cut(s) 170, 1088
AlwI GGATC 3 cut(s) 190, 227, 1115
Ama87I CYCGRG 3 cut(s) 317, 609, 765
AoxI GGCC 3 cut(s) 333, 613, 1070
ApeKI GCWGC 5 cut(s) 460, 493, 605, 791, 1013
ApoI RAATTY 4 cut(s) 376, 421, 728, 1023
Asp700I GAANNNNTTC 1 cut(s) 550
AspA2I CCTAGG 1 cut(s) 1139
AspS9I GGNCC 3 cut(s) 690, 734, 979
AsuC2I CCSGG 2 cut(s) 766, 767
AsuHPI GGTGA 4 cut(s) 182, 430, 1211, 1248
AvaI CYCGRG 3 cut(s) 317, 609, 765
AvaII GGWCC 3 cut(s) 690, 734, 979
AvrII CCTAGG 1 cut(s) 1139
BaeGI GKGCMC 3 cut(s) 331, 779, 889
BanI GGYRCC 2 cut(s) 328, 1192
BbrPI CACGTG 1 cut(s) 757
BbsI GAAGAC 1 cut(s) 45
Bbv12I GWGCWC 1 cut(s) 134
BbvI GCAGC 5 cut(s) 447, 480, 617, 778, 1000
BccI CCATC 4 cut(s) 543, 1081, 1212, 1226
BceAI ACGGC 1 cut(s) 599
BciT130I CCWGG 1 cut(s) 1225
BciVI GTATCC 2 cut(s) 461, 1011
BcnI CCSGG 2 cut(s) 766, 767
BcoDI GTCTC 2 cut(s) 170, 1088
BfaI CTAG 4 cut(s) 233, 252, 617, 1140
BfmI CTRYAG 1 cut(s) 652
BfuAI ACCTGC 1 cut(s) 211
BfuI GTATCC 2 cut(s) 461, 1011
BglII AGATCT 1 cut(s) 867
BisI GCNGC 6 cut(s) 207, 461, 494, 606, 792, 1014
BlnI CCTAGG 1 cut(s) 1139
BlsI GCNGC 6 cut(s) 208, 462, 495, 607, 793, 1015
Bme1390I CCNGG 3 cut(s) 766, 767, 1225
Bme18I GGWCC 3 cut(s) 690, 734, 979
BmeT110I CYCGRG 3 cut(s) 317, 609, 765
BmgT120I GGNCC 3 cut(s) 690, 734, 979
BmiI GGNNCC 5 cut(s) 330, 691, 981, 1137, 1194
BmrFI CCNGG 3 cut(s) 766, 767, 1225
BmsI GCATC 1 cut(s) 826
BpiI GAAGAC 1 cut(s) 45
BpmI CTGGAG 1 cut(s) 1010
BpuEI CTTGAG 1 cut(s) 235
BpuMI CCSGG 2 cut(s) 766, 767
BsaAI YACGTR 1 cut(s) 757
BsaBI GATNNNNATC 2 cut(s) 897, 1236
BsaI GGTCTC 1 cut(s) 170
BsaJI CCNNGG 6 cut(s) 123, 572, 765, 1139, 1183, 1223
BsaXI ACNNNNNCTCC 2 cut(s) 983, 1013
Bsc4I CCNNNNNNNGG 4 cut(s) 157, 772, 988, 1189
Bse118I RCCGGY 2 cut(s) 331, 1068
Bse1I ACTGG 3 cut(s) 64, 151, 993
Bse8I GATNNNNATC 2 cut(s) 897, 1236
BseBI CCWGG 1 cut(s) 1225
BseDI CCNNGG 6 cut(s) 123, 572, 765, 1139, 1183, 1223
BseGI GGATG 3 cut(s) 113, 442, 1165
BseJI GATNNNNATC 2 cut(s) 897, 1236
BseLI CCNNNNNNNGG 4 cut(s) 157, 772, 988, 1189
BseMII CTCAG 3 cut(s) 82, 789, 1043
BseNI ACTGG 3 cut(s) 64, 151, 993
BseRI GAGGAG 2 cut(s) 335, 494
BseSI GKGCMC 3 cut(s) 331, 779, 889
BseXI GCAGC 5 cut(s) 447, 480, 617, 778, 1000
BseYI CCCAGC 1 cut(s) 463
BshFI GGCC 3 cut(s) 335, 615, 1072
BshNI GGYRCC 2 cut(s) 328, 1192
BsiHKAI GWGCWC 1 cut(s) 134
BsiHKCI CYCGRG 3 cut(s) 317, 609, 765
BsiSI CCGG 3 cut(s) 332, 766, 1069
BslI CCNNNNNNNGG 4 cut(s) 157, 772, 988, 1189
BsmAI GTCTC 2 cut(s) 170, 1088
BsmI GAATGC 1 cut(s) 1016
BsnI GGCC 3 cut(s) 335, 615, 1072
Bso31I GGTCTC 1 cut(s) 170
BsoBI CYCGRG 3 cut(s) 317, 609, 765
Bsp1286I GDGCHC 4 cut(s) 134, 331, 779, 889
Bsp143I GATC 5 cut(s) 195, 219, 263, 867, 1107
Bsp19I CCATGG 1 cut(s) 572
BspACI CCGC 2 cut(s) 207, 699
BspANI GGCC 3 cut(s) 335, 615, 1072
BspCNI CTCAG 3 cut(s) 81, 790, 1042
BspLI GGNNCC 5 cut(s) 330, 691, 981, 1137, 1194
BspMI ACCTGC 1 cut(s) 211
BspPI GGATC 3 cut(s) 190, 227, 1115
BspT107I GGYRCC 2 cut(s) 328, 1192
BspTNI GGTCTC 1 cut(s) 170
BsrFI RCCGGY 2 cut(s) 331, 1068
BsrI ACTGG 3 cut(s) 64, 151, 993
BssAI RCCGGY 2 cut(s) 331, 1068
BssECI CCNNGG 6 cut(s) 123, 572, 765, 1139, 1183, 1223
BssMI GATC 5 cut(s) 195, 219, 263, 867, 1107
BssT1I CCWWGG 3 cut(s) 572, 1139, 1183
Bst2UI CCWGG 1 cut(s) 1225
Bst4CI ACNGT 6 cut(s) 76, 274, 355, 473, 845, 1254
Bst6I CTCTTC 2 cut(s) 236, 824
BstBAI YACGTR 1 cut(s) 757
BstC8I GCNNGC 3 cut(s) 314, 389, 1035
BstDEI CTNAG 3 cut(s) 68, 798, 1029
BstDSI CCRYGG 2 cut(s) 123, 572
BstF5I GGATG 3 cut(s) 113, 442, 1165
BstKTI GATC 5 cut(s) 198, 222, 266, 870, 1110
BstMAI GTCTC 2 cut(s) 170, 1088
BstMBI GATC 5 cut(s) 195, 219, 263, 867, 1107
BstMWI GCNNNNNNNGC 2 cut(s) 602, 1013
BstNI CCWGG 1 cut(s) 1225
BstSCI CCNGG 3 cut(s) 764, 765, 1223
BstSFI CTRYAG 1 cut(s) 652
BstSLI GKGCMC 3 cut(s) 331, 779, 889
BstV1I GCAGC 5 cut(s) 447, 480, 617, 778, 1000
BstV2I GAAGAC 1 cut(s) 45
BstX2I RGATCY 3 cut(s) 195, 219, 867
BstXI CCANNNNNNTGG 3 cut(s) 124, 542, 573
BstYI RGATCY 3 cut(s) 195, 219, 867
BsuI GTATCC 2 cut(s) 461, 1011
BsuRI GGCC 3 cut(s) 335, 615, 1072
BtgI CCRYGG 2 cut(s) 123, 572
BtgZI GCGATG 1 cut(s) 1163
BtsCI GGATG 3 cut(s) 113, 442, 1165
BtsIMutI CAGTG 1 cut(s) 81
BveI ACCTGC 1 cut(s) 211
Cac8I GCNNGC 3 cut(s) 314, 389, 1035
Cfr10I RCCGGY 2 cut(s) 331, 1068
Cfr13I GGNCC 3 cut(s) 690, 734, 979
Cfr9I CCCGGG 1 cut(s) 765
Csp6I GTAC 2 cut(s) 72, 841
CviAII CATG 3 cut(s) 511, 573, 772
CviQI GTAC 2 cut(s) 72, 841
DdeI CTNAG 3 cut(s) 68, 798, 1029
DpnI GATC 5 cut(s) 197, 221, 265, 869, 1109
DpnII GATC 5 cut(s) 195, 219, 263, 867, 1107
EaeI YGGCCR 2 cut(s) 333, 1070
Eam1104I CTCTTC 2 cut(s) 236, 824
EarI CTCTTC 2 cut(s) 236, 824
Eco130I CCWWGG 3 cut(s) 572, 1139, 1183
Eco147I AGGCCT 1 cut(s) 615
Eco31I GGTCTC 1 cut(s) 170
Eco32I GATATC 1 cut(s) 708
Eco47I GGWCC 3 cut(s) 690, 734, 979
Eco57I CTGAAG 4 cut(s) 15, 57, 208, 723
Eco72I CACGTG 1 cut(s) 757
Eco88I CYCGRG 3 cut(s) 317, 609, 765
EcoO109I RGGNCCY 1 cut(s) 690
EcoRI GAATTC 1 cut(s) 376
EcoRII CCWGG 1 cut(s) 1223
EcoRV GATATC 1 cut(s) 708
EcoT14I CCWWGG 3 cut(s) 572, 1139, 1183
EcoT22I ATGCAT 1 cut(s) 1049
ErhI CCWWGG 3 cut(s) 572, 1139, 1183
FaeI CATG 3 cut(s) 514, 576, 775
FatI CATG 3 cut(s) 510, 572, 771
FauNDI CATATG 1 cut(s) 781
Fnu4HI GCNGC 6 cut(s) 207, 461, 494, 606, 792, 1014
FokI GGATG 3 cut(s) 100, 429, 1152
Fsp4HI GCNGC 6 cut(s) 207, 461, 494, 606, 792, 1014
FspBI CTAG 4 cut(s) 233, 252, 617, 1140
GluI GCNGC 6 cut(s) 207, 461, 494, 606, 792, 1014
GsaI CCCAGC 1 cut(s) 467
GsuI CTGGAG 1 cut(s) 1010
HaeIII GGCC 3 cut(s) 335, 615, 1072
HapII CCGG 3 cut(s) 332, 766, 1069
Hin1II CATG 3 cut(s) 514, 576, 775
HindIII AAGCTT 3 cut(s) 523, 666, 1082
HinfI GANTC 6 cut(s) 745, 898, 1052, 1112, 1144, 1153
HpaII CCGG 3 cut(s) 332, 766, 1069
HphI GGTGA 4 cut(s) 182, 430, 1211, 1248
Hpy166II GTNNAC 1 cut(s) 841
Hpy188III TCNNGA 3 cut(s) 185, 342, 797
Hpy8I GTNNAC 1 cut(s) 841
HpyAV CCTTC 4 cut(s) 278, 292, 540, 747
HpyCH4III ACNGT 6 cut(s) 76, 274, 355, 473, 845, 1254
HpyCH4IV ACGT 1 cut(s) 756
HpyCH4V TGCA 8 cut(s) 248, 391, 514, 596, 628, 1016, 1047, 1201
HpyF10VI GCNNNNNNNGC 2 cut(s) 602, 1013
HpyF3I CTNAG 3 cut(s) 68, 798, 1029
HpySE526I ACGT 1 cut(s) 756
Hsp92II CATG 3 cut(s) 514, 576, 775
Kzo9I GATC 5 cut(s) 195, 219, 263, 867, 1107
LmnI GCTCC 4 cut(s) 129, 602, 799, 1135
Lsp1109I GCAGC 5 cut(s) 447, 480, 617, 778, 1000
LweI GCATC 1 cut(s) 826
MaeI CTAG 4 cut(s) 233, 252, 617, 1140
MaeII ACGT 1 cut(s) 756
MaeIII GTNAC 4 cut(s) 227, 757, 785, 1254
MalI GATC 5 cut(s) 197, 221, 265, 869, 1109
MboI GATC 5 cut(s) 195, 219, 263, 867, 1107
MboII GAAGA 8 cut(s) 12, 15, 18, 21, 50, 214, 253, 841
MflI RGATCY 3 cut(s) 195, 219, 867
MhlI GDGCHC 4 cut(s) 134, 331, 779, 889
MlyI GAGTC 2 cut(s) 754, 1147
MmeI TCCRAC 1 cut(s) 735
Mph1103I ATGCAT 1 cut(s) 1049
MroXI GAANNNNTTC 1 cut(s) 550
MseI TTAA 2 cut(s) 588, 872
MslI CAYNNNNRTG 3 cut(s) 122, 571, 822
MspA1I CMGCKG 1 cut(s) 35
MspI CCGG 3 cut(s) 332, 766, 1069
MspR9I CCNGG 3 cut(s) 766, 767, 1225
Mva1269I GAATGC 1 cut(s) 1016
MvaI CCWGG 1 cut(s) 1225
MwoI GCNNNNNNNGC 2 cut(s) 602, 1013
NciI CCSGG 2 cut(s) 766, 767
NcoI CCATGG 1 cut(s) 572
NdeI CATATG 1 cut(s) 781
NdeII GATC 5 cut(s) 195, 219, 263, 867, 1107
NlaIII CATG 3 cut(s) 514, 576, 775
NlaIV GGNNCC 5 cut(s) 330, 691, 981, 1137, 1194
NmeAIII GCCGAG 1 cut(s) 105
NmuCI GTSAC 2 cut(s) 757, 1254
NsiI ATGCAT 1 cut(s) 1049
OliI CACNNNNGTG 1 cut(s) 122
PaeR7I CTCGAG 2 cut(s) 317, 609
PceI AGGCCT 1 cut(s) 615
PctI GAATGC 1 cut(s) 1016
PdmI GAANNNNTTC 1 cut(s) 550
PfeI GAWTC 4 cut(s) 898, 1052, 1112, 1144
PkrI GCNGC 6 cut(s) 208, 462, 495, 607, 793, 1015
PleI GAGTC 2 cut(s) 753, 1147
PmaCI CACGTG 1 cut(s) 757
PmlI CACGTG 1 cut(s) 757
PpsI GAGTC 2 cut(s) 753, 1147
Ppu21I YACGTR 1 cut(s) 757
PpuMI RGGWCCY 1 cut(s) 690
Psp5II RGGWCCY 1 cut(s) 690
Psp6I CCWGG 1 cut(s) 1223
PspCI CACGTG 1 cut(s) 757
PspFI CCCAGC 1 cut(s) 463
PspGI CCWGG 1 cut(s) 1223
PspN4I GGNNCC 5 cut(s) 330, 691, 981, 1137, 1194
PspPI GGNCC 3 cut(s) 690, 734, 979
PspPPI RGGWCCY 1 cut(s) 690
PspXI VCTCGAGB 2 cut(s) 317, 609
PsuI RGATCY 3 cut(s) 195, 219, 867
PvuII CAGCTG 1 cut(s) 35
RsaI GTAC 2 cut(s) 73, 842
RsaNI GTAC 2 cut(s) 72, 841
RseI CAYNNNNRTG 3 cut(s) 122, 571, 822
SaqAI TTAA 2 cut(s) 588, 872
SatI GCNGC 6 cut(s) 207, 461, 494, 606, 792, 1014
Sau3AI GATC 5 cut(s) 195, 219, 263, 867, 1107
Sau96I GGNCC 3 cut(s) 690, 734, 979
SchI GAGTC 2 cut(s) 754, 1147
ScrFI CCNGG 3 cut(s) 766, 767, 1225
SduI GDGCHC 4 cut(s) 134, 331, 779, 889
SfaNI GCATC 1 cut(s) 826
SfcI CTRYAG 1 cut(s) 652
Sfr274I CTCGAG 2 cut(s) 317, 609
SinI GGWCC 3 cut(s) 690, 734, 979
SlaI CTCGAG 2 cut(s) 317, 609
SmaI CCCGGG 1 cut(s) 767
SmiMI CAYNNNNRTG 3 cut(s) 122, 571, 822
SmlI CTYRAG 3 cut(s) 214, 317, 609
SmoI CTYRAG 3 cut(s) 214, 317, 609
SseBI AGGCCT 1 cut(s) 615
SsiI CCGC 2 cut(s) 207, 699
SspMI CTAG 4 cut(s) 233, 252, 617, 1140
StuI AGGCCT 1 cut(s) 615
StyD4I CCNGG 3 cut(s) 764, 765, 1223
StyI CCWWGG 3 cut(s) 572, 1139, 1183
TaaI ACNGT 6 cut(s) 76, 274, 355, 473, 845, 1254
TaiI ACGT 1 cut(s) 759
TaqI TCGA 6 cut(s) 318, 610, 985, 1110, 1151, 1261
TatI WGTACW 1 cut(s) 71
TauI GCSGC 1 cut(s) 209
TfiI GAWTC 4 cut(s) 898, 1052, 1112, 1144
Tru1I TTAA 2 cut(s) 588, 872
Tru9I TTAA 2 cut(s) 588, 872
TscAI CASTG 1 cut(s) 81
TseFI GTSAC 2 cut(s) 757, 1254
TseI GCWGC 5 cut(s) 460, 493, 605, 791, 1013
Tsp45I GTSAC 2 cut(s) 757, 1254
TspDTI ATGAA 3 cut(s) 499, 1094, 1137
TspGWI ACGGA 1 cut(s) 112
TspMI CCCGGG 1 cut(s) 765
TspRI CASTG 1 cut(s) 81
VpaK11BI GGWCC 3 cut(s) 690, 734, 979
XapI RAATTY 4 cut(s) 376, 421, 728, 1023
XhoI CTCGAG 2 cut(s) 317, 609
XmaI CCCGGG 1 cut(s) 765
XmaJI CCTAGG 1 cut(s) 1139
XmnI GAANNNNTTC 1 cut(s) 550
XspI CTAG 4 cut(s) 233, 252, 617, 1140
Zsp2I ATGCAT 1 cut(s) 1049
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.