Rroxscaffold_7G00187600
ERF Family

Belongs to the protein kinase superfamily

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
Physical Location & Seq
Forward (+)
26997228 .. 27000484
3257 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00187600.1

Sequence Viewer

Length: 1239 bp
ATGGGGAATTGCTGGTTTTCTTCTTCAGCTGAAGACCCAACACCAACTACTACTGGTCATCTCAGTACAGTGCCAAGTAGCATATCTCAATCAATTAGTAATGCCACATCCACTTCCGTGGGGAGCACTATATCAAGGAATAGCCAGTTTTCGGAGAGAAGTGGTGATGAGACCTGTCCAGATGGGCAGATCCTACCCGCCGCAAACTTGAGGATCTTCAGTTACCTAGAATTGAAGAGTGCAACTAGAAACTTCAGATCAGACACGGTGCTTGGGGAAGGAGGTTTTGGGAAGGTCTATAAAGGCTGGCTCGAGGACAGGGCACCGACCAAGTCTGGAAAGACAACTGTAATTGCTGTAAAGAAATTGAATTCAGAGAGCTTGCAAGTTTTAGGTAGGAGTAGGACTTACCATCGAACTAGTTTTCCCATGTCATTTTCACTTTCATACTTTAAGCAATTGAGATTAACCTTGACCGCTGTGGTATCAGCTGCTCATTTGGAGGGAGTCAGAGGGGGTTCAGTTGTTCAGCCACTTCCATGGGATATACGGCTTAAAGTTGCAATAGGAGCAGCTCGAGGCCTAGCATTTTTGCATACATCAGAGAAGCAAGTAATCTATAGAGATTTCAAAGCTTCCAATATACTACTTGATGGGTCCTTTACCGCCAAGATATCCGACTTTGGCTTGGCAAAATTTGGTCCTTCAGAGAGTCAATCACACGTGACAACCCGGGTCATGGGCACATATGGTTACGCTGCTCCTGAGTATGTTGCCACAGGGCATCTCTATGTGAAGAGTGATGTGTACGGTTTTGGTGTTGTGTTGGTTGAGATCTTAACAGGCTTACGGGCACTTGATACGAATCGTCCAAGTGGAAAACATAATCTTGTGGAGTGGGTAAAACCATATTTATCAGATAAAAGAAAATTGAAAGGCATTATGGACCCTCGACTGGAGGGAAAGTATCCAGCCAAAGCTGCATTCCGAATTTCTCAGCTTGCTCTAAAATGCATTGAATCTGAACACAAAAACCGGCCGCCAATGAAGGTCGTTGTGGAGACTTTGGAAAGGATCGAATCTGTCAATGAACATATAAGGGAGCCTAGGATTCGTTCGACTCTTTCTACTCATCCTATGGCTCATCGCCAAGGTCAGGCACCTTTGCACCATCGTTCTCCACTTCACCCCAGGTCAGATGGAAATCAAAACTACCAACAGTCACCTCGAATGAGGTAA

Protein Analysis

412

Amino Acids

45.55

Weight (kDa)

9.84

Isoelectric Point (pI)

42.28

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pkinase PF00069 87 - 353 1.5e-25 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 179 - 356 3.8e-23 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0015783)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G17220 AT2G17220
fragaria_vesca FvH4_2g16680
malus_domestica MD05G1135000.v1.1 MD10G1140500.v1.1
prunus_persica Prupe.8G178900_v2.0.a1
pyrus_communis pycom05g13160 pycom10g11910
rosa_chinensis RchiOBHm_Chr6g0280821
rosa_multiflora Rmu_co8480431.1_g000001
rosa_roxburghii Rroxscaffold_7G00187600
rosa_rugosa Rorug06G0134700
rosa_samantha Rh6BG249600 Rh6DG242400
rosa_wichuraiana Rw6G021440

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 322, 1159
AciI CCGC 5 cut(s) 198, 201, 477, 666, 1040
AclWI GGATC 3 cut(s) 184, 221, 1082
AcoI YGGCCR 1 cut(s) 1037
AcsI RAATTY 3 cut(s) 370, 695, 990
AcuI CTGAAG 5 cut(s) 9, 51, 202, 238, 690
AcvI CACGTG 1 cut(s) 724
AfaI GTAC 2 cut(s) 67, 809
AfiI CCNNNNNNNGG 4 cut(s) 151, 739, 955, 1156
AflIII ACRYGT 1 cut(s) 721
AgsI TTSAA 5 cut(s) 235, 370, 631, 934, 1019
AhlI ACTAGT 1 cut(s) 419
AjnI CCWGG 1 cut(s) 1190
AjuI GAANNNNNNNTTGG 4 cut(s) 270, 302, 968, 1000
AleI CACNNNNGTG 1 cut(s) 116
AloI GAACNNNNNNTCC 2 cut(s) 409, 441
AluBI AGCT 7 cut(s) 29, 381, 491, 575, 635, 980, 1000
AluI AGCT 7 cut(s) 29, 381, 491, 575, 635, 980, 1000
Alw21I GWGCWC 1 cut(s) 128
Alw26I GTCTC 2 cut(s) 164, 1055
AlwI GGATC 3 cut(s) 184, 221, 1082
Ama87I CYCGRG 3 cut(s) 311, 576, 732
AoxI GGCC 2 cut(s) 580, 1037
ApeKI GCWGC 4 cut(s) 491, 572, 758, 980
ApoI RAATTY 3 cut(s) 370, 695, 990
AspA2I CCTAGG 1 cut(s) 1106
AspS9I GGNCC 3 cut(s) 657, 701, 946
AsuC2I CCSGG 2 cut(s) 733, 734
AsuHPI GGTGA 3 cut(s) 176, 1178, 1215
AvaI CYCGRG 3 cut(s) 311, 576, 732
AvaII GGWCC 3 cut(s) 657, 701, 946
AvrII CCTAGG 1 cut(s) 1106
BaeGI GKGCMC 3 cut(s) 325, 746, 856
BanI GGYRCC 2 cut(s) 322, 1159
BbrPI CACGTG 1 cut(s) 724
BbsI GAAGAC 1 cut(s) 39
Bbv12I GWGCWC 1 cut(s) 128
BbvI GCAGC 4 cut(s) 478, 584, 745, 967
BccI CCATC 5 cut(s) 176, 420, 647, 1179, 1193
BceAI ACGGC 1 cut(s) 566
BciT130I CCWGG 1 cut(s) 1192
BciVI GTATCC 1 cut(s) 978
BcnI CCSGG 2 cut(s) 733, 734
BcoDI GTCTC 2 cut(s) 164, 1055
BcuI ACTAGT 1 cut(s) 419
BfaI CTAG 5 cut(s) 227, 246, 420, 584, 1107
BfmI CTRYAG 1 cut(s) 619
BfuI GTATCC 1 cut(s) 978
BglII AGATCT 1 cut(s) 834
BisI GCNGC 6 cut(s) 201, 492, 573, 759, 981, 1040
BlnI CCTAGG 1 cut(s) 1106
BlsI GCNGC 6 cut(s) 202, 493, 574, 760, 982, 1041
Bme1390I CCNGG 3 cut(s) 733, 734, 1192
Bme18I GGWCC 3 cut(s) 657, 701, 946
BmeT110I CYCGRG 3 cut(s) 311, 576, 732
BmgT120I GGNCC 3 cut(s) 657, 701, 946
BmiI GGNNCC 5 cut(s) 324, 658, 948, 1104, 1161
BmrFI CCNGG 3 cut(s) 733, 734, 1192
BmsI GCATC 1 cut(s) 793
BpiI GAAGAC 1 cut(s) 39
BpmI CTGGAG 1 cut(s) 977
BpuEI CTTGAG 1 cut(s) 229
BpuMI CCSGG 2 cut(s) 733, 734
BsaAI YACGTR 1 cut(s) 724
BsaBI GATNNNNATC 2 cut(s) 864, 1203
BsaI GGTCTC 1 cut(s) 164
BsaJI CCNNGG 6 cut(s) 117, 539, 732, 1106, 1150, 1190
BsaXI ACNNNNNCTCC 2 cut(s) 950, 980
Bsc4I CCNNNNNNNGG 4 cut(s) 151, 739, 955, 1156
Bse118I RCCGGY 1 cut(s) 1035
Bse1I ACTGG 3 cut(s) 58, 145, 960
Bse8I GATNNNNATC 2 cut(s) 864, 1203
BseBI CCWGG 1 cut(s) 1192
BseDI CCNNGG 6 cut(s) 117, 539, 732, 1106, 1150, 1190
BseGI GGATG 2 cut(s) 107, 1132
BseJI GATNNNNATC 2 cut(s) 864, 1203
BseLI CCNNNNNNNGG 4 cut(s) 151, 739, 955, 1156
BseMII CTCAG 3 cut(s) 76, 756, 1010
BseNI ACTGG 3 cut(s) 58, 145, 960
BseSI GKGCMC 3 cut(s) 325, 746, 856
BseX3I CGGCCG 1 cut(s) 1037
BseXI GCAGC 4 cut(s) 478, 584, 745, 967
Bsh1285I CGRYCG 1 cut(s) 1040
BshFI GGCC 2 cut(s) 582, 1039
BshNI GGYRCC 2 cut(s) 322, 1159
BsiEI CGRYCG 1 cut(s) 1040
BsiHKAI GWGCWC 1 cut(s) 128
BsiHKCI CYCGRG 3 cut(s) 311, 576, 732
BsiSI CCGG 2 cut(s) 733, 1036
BslI CCNNNNNNNGG 4 cut(s) 151, 739, 955, 1156
BsmAI GTCTC 2 cut(s) 164, 1055
BsmI GAATGC 1 cut(s) 983
BsnI GGCC 2 cut(s) 582, 1039
Bso31I GGTCTC 1 cut(s) 164
BsoBI CYCGRG 3 cut(s) 311, 576, 732
Bsp1286I GDGCHC 4 cut(s) 128, 325, 746, 856
Bsp143I GATC 5 cut(s) 189, 213, 257, 834, 1074
Bsp19I CCATGG 1 cut(s) 539
BspACI CCGC 5 cut(s) 198, 201, 477, 666, 1040
BspANI GGCC 2 cut(s) 582, 1039
BspCNI CTCAG 3 cut(s) 75, 757, 1009
BspLI GGNNCC 5 cut(s) 324, 658, 948, 1104, 1161
BspPI GGATC 3 cut(s) 184, 221, 1082
BspT107I GGYRCC 2 cut(s) 322, 1159
BspTNI GGTCTC 1 cut(s) 164
BsrFI RCCGGY 1 cut(s) 1035
BsrI ACTGG 3 cut(s) 58, 145, 960
BssAI RCCGGY 1 cut(s) 1035
BssECI CCNNGG 6 cut(s) 117, 539, 732, 1106, 1150, 1190
BssMI GATC 5 cut(s) 189, 213, 257, 834, 1074
BssT1I CCWWGG 3 cut(s) 539, 1106, 1150
Bst2UI CCWGG 1 cut(s) 1192
Bst4CI ACNGT 5 cut(s) 70, 268, 349, 812, 1221
Bst6I CTCTTC 2 cut(s) 230, 791
BstBAI YACGTR 1 cut(s) 724
BstC8I GCNNGC 3 cut(s) 308, 383, 1002
BstDEI CTNAG 3 cut(s) 62, 765, 996
BstDSI CCRYGG 2 cut(s) 117, 539
BstF5I GGATG 2 cut(s) 107, 1132
BstKTI GATC 5 cut(s) 192, 216, 260, 837, 1077
BstMAI GTCTC 2 cut(s) 164, 1055
BstMBI GATC 5 cut(s) 189, 213, 257, 834, 1074
BstMCI CGRYCG 1 cut(s) 1040
BstMWI GCNNNNNNNGC 2 cut(s) 569, 980
BstNI CCWGG 1 cut(s) 1192
BstSCI CCNGG 3 cut(s) 731, 732, 1190
BstSFI CTRYAG 1 cut(s) 619
BstSLI GKGCMC 3 cut(s) 325, 746, 856
BstV1I GCAGC 4 cut(s) 478, 584, 745, 967
BstV2I GAAGAC 1 cut(s) 39
BstX2I RGATCY 3 cut(s) 189, 213, 834
BstXI CCANNNNNNTGG 2 cut(s) 118, 540
BstYI RGATCY 3 cut(s) 189, 213, 834
BstZI CGGCCG 1 cut(s) 1037
BsuI GTATCC 1 cut(s) 978
BsuRI GGCC 2 cut(s) 582, 1039
BtgI CCRYGG 2 cut(s) 117, 539
BtgZI GCGATG 1 cut(s) 1130
BtsCI GGATG 2 cut(s) 107, 1132
BtsIMutI CAGTG 1 cut(s) 75
Cac8I GCNNGC 3 cut(s) 308, 383, 1002
Cfr10I RCCGGY 1 cut(s) 1035
Cfr13I GGNCC 3 cut(s) 657, 701, 946
Cfr9I CCCGGG 1 cut(s) 732
Csp6I GTAC 2 cut(s) 66, 808
CviAII CATG 3 cut(s) 430, 540, 739
CviQI GTAC 2 cut(s) 66, 808
DdeI CTNAG 3 cut(s) 62, 765, 996
DpnI GATC 5 cut(s) 191, 215, 259, 836, 1076
DpnII GATC 5 cut(s) 189, 213, 257, 834, 1074
EaeI YGGCCR 1 cut(s) 1037
EagI CGGCCG 1 cut(s) 1037
Eam1104I CTCTTC 2 cut(s) 230, 791
EarI CTCTTC 2 cut(s) 230, 791
EclXI CGGCCG 1 cut(s) 1037
Eco130I CCWWGG 3 cut(s) 539, 1106, 1150
Eco147I AGGCCT 1 cut(s) 582
Eco31I GGTCTC 1 cut(s) 164
Eco32I GATATC 1 cut(s) 675
Eco47I GGWCC 3 cut(s) 657, 701, 946
Eco52I CGGCCG 1 cut(s) 1037
Eco57I CTGAAG 5 cut(s) 9, 51, 202, 238, 690
Eco72I CACGTG 1 cut(s) 724
Eco88I CYCGRG 3 cut(s) 311, 576, 732
EcoO109I RGGNCCY 1 cut(s) 657
EcoRI GAATTC 1 cut(s) 370
EcoRII CCWGG 1 cut(s) 1190
EcoRV GATATC 1 cut(s) 675
EcoT14I CCWWGG 3 cut(s) 539, 1106, 1150
EcoT22I ATGCAT 1 cut(s) 1016
ErhI CCWWGG 3 cut(s) 539, 1106, 1150
FaeI CATG 3 cut(s) 433, 543, 742
FatI CATG 3 cut(s) 429, 539, 738
FauI CCCGC 1 cut(s) 205
FauNDI CATATG 1 cut(s) 748
Fnu4HI GCNGC 6 cut(s) 201, 492, 573, 759, 981, 1040
FokI GGATG 2 cut(s) 94, 1119
Fsp4HI GCNGC 6 cut(s) 201, 492, 573, 759, 981, 1040
FspBI CTAG 5 cut(s) 227, 246, 420, 584, 1107
GluI GCNGC 6 cut(s) 201, 492, 573, 759, 981, 1040
GsuI CTGGAG 1 cut(s) 977
HaeIII GGCC 2 cut(s) 582, 1039
HapII CCGG 2 cut(s) 733, 1036
Hin1II CATG 3 cut(s) 433, 543, 742
HindIII AAGCTT 1 cut(s) 633
HinfI GANTC 7 cut(s) 507, 712, 865, 1019, 1079, 1111, 1120
HpaII CCGG 2 cut(s) 733, 1036
HphI GGTGA 3 cut(s) 176, 1178, 1215
Hpy166II GTNNAC 1 cut(s) 808
Hpy188III TCNNGA 3 cut(s) 179, 336, 764
Hpy8I GTNNAC 1 cut(s) 808
HpyAV CCTTC 4 cut(s) 272, 286, 714, 1042
HpyCH4III ACNGT 5 cut(s) 70, 268, 349, 812, 1221
HpyCH4IV ACGT 1 cut(s) 723
HpyCH4V TGCA 7 cut(s) 242, 385, 563, 595, 983, 1014, 1168
HpyF10VI GCNNNNNNNGC 2 cut(s) 569, 980
HpyF3I CTNAG 3 cut(s) 62, 765, 996
HpySE526I ACGT 1 cut(s) 723
Hsp92II CATG 3 cut(s) 433, 543, 742
Kzo9I GATC 5 cut(s) 189, 213, 257, 834, 1074
LmnI GCTCC 4 cut(s) 123, 569, 766, 1102
Lsp1109I GCAGC 4 cut(s) 478, 584, 745, 967
LweI GCATC 1 cut(s) 793
MaeI CTAG 5 cut(s) 227, 246, 420, 584, 1107
MaeII ACGT 1 cut(s) 723
MaeIII GTNAC 4 cut(s) 221, 724, 752, 1221
MalI GATC 5 cut(s) 191, 215, 259, 836, 1076
MboI GATC 5 cut(s) 189, 213, 257, 834, 1074
MboII GAAGA 6 cut(s) 12, 15, 44, 208, 247, 808
MfeI CAATTG 1 cut(s) 458
MflI RGATCY 3 cut(s) 189, 213, 834
MhlI GDGCHC 4 cut(s) 128, 325, 746, 856
MlyI GAGTC 3 cut(s) 516, 721, 1114
MmeI TCCRAC 1 cut(s) 702
Mph1103I ATGCAT 1 cut(s) 1016
MseI TTAA 4 cut(s) 453, 467, 555, 839
MslI CAYNNNNRTG 3 cut(s) 116, 538, 789
MspA1I CMGCKG 3 cut(s) 29, 479, 491
MspI CCGG 2 cut(s) 733, 1036
MspR9I CCNGG 3 cut(s) 733, 734, 1192
MunI CAATTG 1 cut(s) 458
Mva1269I GAATGC 1 cut(s) 983
MvaI CCWGG 1 cut(s) 1192
MwoI GCNNNNNNNGC 2 cut(s) 569, 980
NciI CCSGG 2 cut(s) 733, 734
NcoI CCATGG 1 cut(s) 539
NdeI CATATG 1 cut(s) 748
NdeII GATC 5 cut(s) 189, 213, 257, 834, 1074
NlaIII CATG 3 cut(s) 433, 543, 742
NlaIV GGNNCC 5 cut(s) 324, 658, 948, 1104, 1161
NmuCI GTSAC 2 cut(s) 724, 1221
NsiI ATGCAT 1 cut(s) 1016
OliI CACNNNNGTG 1 cut(s) 116
PaeR7I CTCGAG 2 cut(s) 311, 576
PceI AGGCCT 1 cut(s) 582
PctI GAATGC 1 cut(s) 983
PfeI GAWTC 4 cut(s) 865, 1019, 1079, 1111
PflFI GACNNNGTC 1 cut(s) 331
PkrI GCNGC 6 cut(s) 202, 493, 574, 760, 982, 1041
PleI GAGTC 3 cut(s) 515, 720, 1114
PmaCI CACGTG 1 cut(s) 724
PmlI CACGTG 1 cut(s) 724
PpsI GAGTC 3 cut(s) 515, 720, 1114
Ppu21I YACGTR 1 cut(s) 724
PpuMI RGGWCCY 1 cut(s) 657
Psp5II RGGWCCY 1 cut(s) 657
Psp6I CCWGG 1 cut(s) 1190
PspCI CACGTG 1 cut(s) 724
PspGI CCWGG 1 cut(s) 1190
PspN4I GGNNCC 5 cut(s) 324, 658, 948, 1104, 1161
PspPI GGNCC 3 cut(s) 657, 701, 946
PspPPI RGGWCCY 1 cut(s) 657
PspXI VCTCGAGB 2 cut(s) 311, 576
PsuI RGATCY 3 cut(s) 189, 213, 834
PsyI GACNNNGTC 1 cut(s) 331
PvuII CAGCTG 2 cut(s) 29, 491
RsaI GTAC 2 cut(s) 67, 809
RsaNI GTAC 2 cut(s) 66, 808
RseI CAYNNNNRTG 3 cut(s) 116, 538, 789
SaqAI TTAA 4 cut(s) 453, 467, 555, 839
SatI GCNGC 6 cut(s) 201, 492, 573, 759, 981, 1040
Sau3AI GATC 5 cut(s) 189, 213, 257, 834, 1074
Sau96I GGNCC 3 cut(s) 657, 701, 946
SchI GAGTC 3 cut(s) 516, 721, 1114
ScrFI CCNGG 3 cut(s) 733, 734, 1192
SduI GDGCHC 4 cut(s) 128, 325, 746, 856
SfaNI GCATC 1 cut(s) 793
SfcI CTRYAG 1 cut(s) 619
Sfr274I CTCGAG 2 cut(s) 311, 576
SinI GGWCC 3 cut(s) 657, 701, 946
SlaI CTCGAG 2 cut(s) 311, 576
SmaI CCCGGG 1 cut(s) 734
SmiMI CAYNNNNRTG 3 cut(s) 116, 538, 789
SmlI CTYRAG 3 cut(s) 208, 311, 576
SmoI CTYRAG 3 cut(s) 208, 311, 576
SpeI ACTAGT 1 cut(s) 419
SseBI AGGCCT 1 cut(s) 582
SsiI CCGC 5 cut(s) 198, 201, 477, 666, 1040
SspMI CTAG 5 cut(s) 227, 246, 420, 584, 1107
StuI AGGCCT 1 cut(s) 582
StyD4I CCNGG 3 cut(s) 731, 732, 1190
StyI CCWWGG 3 cut(s) 539, 1106, 1150
TaaI ACNGT 5 cut(s) 70, 268, 349, 812, 1221
TaiI ACGT 1 cut(s) 726
TaqI TCGA 7 cut(s) 312, 415, 577, 952, 1077, 1118, 1228
TatI WGTACW 1 cut(s) 65
TauI GCSGC 2 cut(s) 203, 1042
TfiI GAWTC 4 cut(s) 865, 1019, 1079, 1111
Tru1I TTAA 4 cut(s) 453, 467, 555, 839
Tru9I TTAA 4 cut(s) 453, 467, 555, 839
TscAI CASTG 1 cut(s) 75
TseFI GTSAC 2 cut(s) 724, 1221
TseI GCWGC 4 cut(s) 491, 572, 758, 980
Tsp45I GTSAC 2 cut(s) 724, 1221
TspDTI ATGAA 3 cut(s) 435, 1061, 1104
TspGWI ACGGA 1 cut(s) 106
TspMI CCCGGG 1 cut(s) 732
TspRI CASTG 1 cut(s) 75
Tth111I GACNNNGTC 1 cut(s) 331
VpaK11BI GGWCC 3 cut(s) 657, 701, 946
XapI RAATTY 3 cut(s) 370, 695, 990
XhoI CTCGAG 2 cut(s) 311, 576
XmaI CCCGGG 1 cut(s) 732
XmaJI CCTAGG 1 cut(s) 1106
XspI CTAG 5 cut(s) 227, 246, 420, 584, 1107
Zsp2I ATGCAT 1 cut(s) 1016
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.