Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8480431.1

Orthogroup ID

OG0015783

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 1974

Gene Structure 1974 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8480431.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1037 bp

aattgaagagtgctactagaaacttcagatcagacacggtgcttggggaaggaggttttgggaaggtctataaaggctggctcgaggagagggcaccaaccaagtctggaaagacaactgtaattgctgtaaagaaattgaattcagagagcttgcaaggttttgaggaatggcagtcagaggtgaatttcttggggcgactttctcatcctaatcttgtaaagctgctaggatactgttgggaggagaaagaactgctgctgatctatgagttcatgcaaaaaggaagcttggaaaaccatctttttggaaggggttcagttgttcagccacttccatgggatatacggcttaaagttgcaataggagcagctcgaggcctagcatttttgcatacatcagagaagcaagtaatctatagagatttcaaagcttccaatatattacttgacgggtcctttaccgccaagatatccgactttggcttggcaaaatttggtccttcagagagtcaatcacatgtgacaacccgggtcatgggcacatatggttacgctgctcctgagtatgttgccacagggcatctctatgtgaagagtgatgtgtacggttttggtgttgtgttggttgagatcttaacaggcttacgggcacttgatacgaatcgtccaagtggaaaacataatcttgtggagtgggtaaaaccatatttatcagataaaagaaaattgaaaggcattatggaccctcgactggagggaaagtatccagccaaagctgcattccgaatttctcagcttgctctaaaatgcattgaatctgaacacaaaaaccggccatcaatgaaggttgttgtggagactttggaaaggatcgaatctgtcaatgaacatataagggagcctaggattcgttcgactcattctactcatcctatggctcatcgccaaggtcagccacctttgcaccatcgttctccacttcaccccaggccagatggaaatcaaaactaccaacagtcacctcgaacgaggtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase_Tyr

Protein Analysis

344

Amino Acids

38.87

Weight (kDa)

9.68

Isoelectric Point (pI)

36.28

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015783)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G17220 AT2G17220
fragaria_vesca	FvH4_2g16680
malus_domestica	MD05G1135000.v1.1 MD10G1140500.v1.1
prunus_persica	Prupe.8G178900_v2.0.a1
pyrus_communis	pycom05g13160 pycom10g11910
rosa_chinensis	RchiOBHm_Chr6g0280821
rosa_multiflora	Rmu_co8480431.1_g000001
rosa_roxburghii	Rroxscaffold_7G00187600
rosa_rugosa	Rorug06G0134700
rosa_samantha	Rh6BG249600 Rh6DG242400
rosa_wichuraiana	Rw6G021440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	93
AciI	CCGC	1 cut(s)	464
AclWI	GGATC	1 cut(s)	880
AcoI	YGGCCR	1 cut(s)	835
AcsI	RAATTY	4 cut(s)	141, 186, 493, 788
AcuI	CTGAAG	2 cut(s)	9, 488
AfaI	GTAC	1 cut(s)	607
AfiI	CCNNNNNNNGG	2 cut(s)	537, 753
AflIII	ACRYGT	1 cut(s)	519
AgsI	TTSAA	5 cut(s)	6, 141, 429, 732, 817
AjnI	CCWGG	1 cut(s)	988
AjuI	GAANNNNNNNTTGG	4 cut(s)	41, 73, 766, 798
AluBI	AGCT	7 cut(s)	152, 225, 290, 373, 433, 778, 798
AluI	AGCT	7 cut(s)	152, 225, 290, 373, 433, 778, 798
Alw26I	GTCTC	1 cut(s)	853
AlwI	GGATC	1 cut(s)	880
Ama87I	CYCGRG	3 cut(s)	82, 374, 530
AoxI	GGCC	3 cut(s)	378, 835, 991
ApeKI	GCWGC	5 cut(s)	225, 258, 370, 556, 778
ApoI	RAATTY	4 cut(s)	141, 186, 493, 788
Asp700I	GAANNNNTTC	1 cut(s)	315
AspA2I	CCTAGG	1 cut(s)	904
AspS9I	GGNCC	3 cut(s)	455, 499, 744
AsuC2I	CCSGG	2 cut(s)	531, 532
AsuHPI	GGTGA	3 cut(s)	195, 976, 1013
AvaI	CYCGRG	3 cut(s)	82, 374, 530
AvaII	GGWCC	3 cut(s)	455, 499, 744
AvrII	CCTAGG	1 cut(s)	904
BaeGI	GKGCMC	3 cut(s)	96, 544, 654
BanI	GGYRCC	1 cut(s)	93
BbvI	GCAGC	5 cut(s)	212, 245, 382, 543, 765
BccI	CCATC	4 cut(s)	308, 846, 977, 991
BceAI	ACGGC	1 cut(s)	364
BciT130I	CCWGG	1 cut(s)	990
BciVI	GTATCC	2 cut(s)	226, 776
BcnI	CCSGG	2 cut(s)	531, 532
BcoDI	GTCTC	1 cut(s)	853
BfaI	CTAG	4 cut(s)	17, 229, 382, 905
BfmI	CTRYAG	1 cut(s)	417
BfuI	GTATCC	2 cut(s)	226, 776
BglII	AGATCT	1 cut(s)	632
BisI	GCNGC	5 cut(s)	226, 259, 371, 557, 779
BlnI	CCTAGG	1 cut(s)	904
BlsI	GCNGC	5 cut(s)	227, 260, 372, 558, 780
Bme1390I	CCNGG	3 cut(s)	531, 532, 990
Bme18I	GGWCC	3 cut(s)	455, 499, 744
BmeT110I	CYCGRG	3 cut(s)	82, 374, 530
BmgT120I	GGNCC	3 cut(s)	455, 499, 744
BmiI	GGNNCC	4 cut(s)	95, 456, 746, 902
BmrFI	CCNGG	3 cut(s)	531, 532, 990
BmsI	GCATC	1 cut(s)	591
BpmI	CTGGAG	1 cut(s)	775
BpuMI	CCSGG	2 cut(s)	531, 532
BsaBI	GATNNNNATC	2 cut(s)	662, 1001
BsaJI	CCNNGG	5 cut(s)	337, 530, 904, 948, 988
BsaXI	ACNNNNNCTCC	2 cut(s)	748, 778
Bsc4I	CCNNNNNNNGG	2 cut(s)	537, 753
Bse118I	RCCGGY	1 cut(s)	833
Bse1I	ACTGG	1 cut(s)	758
Bse8I	GATNNNNATC	2 cut(s)	662, 1001
BseBI	CCWGG	1 cut(s)	990
BseDI	CCNNGG	5 cut(s)	337, 530, 904, 948, 988
BseGI	GGATG	2 cut(s)	207, 930
BseJI	GATNNNNATC	2 cut(s)	662, 1001
BseLI	CCNNNNNNNGG	2 cut(s)	537, 753
BseMII	CTCAG	2 cut(s)	554, 808
BseNI	ACTGG	1 cut(s)	758
BseRI	GAGGAG	2 cut(s)	100, 259
BseSI	GKGCMC	3 cut(s)	96, 544, 654
BseXI	GCAGC	5 cut(s)	212, 245, 382, 543, 765
BshFI	GGCC	3 cut(s)	380, 837, 993
BshNI	GGYRCC	1 cut(s)	93
BsiHKCI	CYCGRG	3 cut(s)	82, 374, 530
BsiSI	CCGG	2 cut(s)	531, 834
BslI	CCNNNNNNNGG	2 cut(s)	537, 753
BsmAI	GTCTC	1 cut(s)	853
BsmI	GAATGC	1 cut(s)	781
BsnI	GGCC	3 cut(s)	380, 837, 993
BsoBI	CYCGRG	3 cut(s)	82, 374, 530
Bsp1286I	GDGCHC	3 cut(s)	96, 544, 654
Bsp143I	GATC	4 cut(s)	28, 263, 632, 872
Bsp19I	CCATGG	1 cut(s)	337
BspACI	CCGC	1 cut(s)	464
BspANI	GGCC	3 cut(s)	380, 837, 993
BspCNI	CTCAG	2 cut(s)	555, 807
BspLI	GGNNCC	4 cut(s)	95, 456, 746, 902
BspPI	GGATC	1 cut(s)	880
BspT107I	GGYRCC	1 cut(s)	93
BsrFI	RCCGGY	1 cut(s)	833
BsrI	ACTGG	1 cut(s)	758
BssAI	RCCGGY	1 cut(s)	833
BssECI	CCNNGG	5 cut(s)	337, 530, 904, 948, 988
BssMI	GATC	4 cut(s)	28, 263, 632, 872
BssT1I	CCWWGG	3 cut(s)	337, 904, 948
Bst2UI	CCWGG	1 cut(s)	990
Bst4CI	ACNGT	5 cut(s)	39, 120, 238, 610, 1019
Bst6I	CTCTTC	1 cut(s)	589
BstC8I	GCNNGC	3 cut(s)	79, 154, 800
BstDEI	CTNAG	2 cut(s)	563, 794
BstDSI	CCRYGG	1 cut(s)	337
BstF5I	GGATG	2 cut(s)	207, 930
BstKTI	GATC	4 cut(s)	31, 266, 635, 875
BstMAI	GTCTC	1 cut(s)	853
BstMBI	GATC	4 cut(s)	28, 263, 632, 872
BstMWI	GCNNNNNNNGC	3 cut(s)	367, 778, 963
BstNI	CCWGG	1 cut(s)	990
BstNSI	RCATGY	1 cut(s)	523
BstSCI	CCNGG	3 cut(s)	529, 530, 988
BstSFI	CTRYAG	1 cut(s)	417
BstSLI	GKGCMC	3 cut(s)	96, 544, 654
BstV1I	GCAGC	5 cut(s)	212, 245, 382, 543, 765
BstX2I	RGATCY	1 cut(s)	632
BstXI	CCANNNNNNTGG	2 cut(s)	307, 338
BstYI	RGATCY	1 cut(s)	632
BsuI	GTATCC	2 cut(s)	226, 776
BsuRI	GGCC	3 cut(s)	380, 837, 993
BtgI	CCRYGG	1 cut(s)	337
BtgZI	GCGATG	1 cut(s)	928
BtsCI	GGATG	2 cut(s)	207, 930
Cac8I	GCNNGC	3 cut(s)	79, 154, 800
Cfr10I	RCCGGY	1 cut(s)	833
Cfr13I	GGNCC	3 cut(s)	455, 499, 744
Cfr9I	CCCGGG	1 cut(s)	530
Csp6I	GTAC	1 cut(s)	606
CviAII	CATG	4 cut(s)	276, 338, 520, 537
CviQI	GTAC	1 cut(s)	606
DdeI	CTNAG	2 cut(s)	563, 794
DpnI	GATC	4 cut(s)	30, 265, 634, 874
DpnII	GATC	4 cut(s)	28, 263, 632, 872
EaeI	YGGCCR	1 cut(s)	835
Eam1104I	CTCTTC	1 cut(s)	589
EarI	CTCTTC	1 cut(s)	589
Eco130I	CCWWGG	3 cut(s)	337, 904, 948
Eco147I	AGGCCT	1 cut(s)	380
Eco32I	GATATC	1 cut(s)	473
Eco47I	GGWCC	3 cut(s)	455, 499, 744
Eco57I	CTGAAG	2 cut(s)	9, 488
Eco88I	CYCGRG	3 cut(s)	82, 374, 530
EcoO109I	RGGNCCY	1 cut(s)	455
EcoRI	GAATTC	1 cut(s)	141
EcoRII	CCWGG	1 cut(s)	988
EcoRV	GATATC	1 cut(s)	473
EcoT14I	CCWWGG	3 cut(s)	337, 904, 948
EcoT22I	ATGCAT	1 cut(s)	814
ErhI	CCWWGG	3 cut(s)	337, 904, 948
FaeI	CATG	4 cut(s)	279, 341, 523, 540
FatI	CATG	4 cut(s)	275, 337, 519, 536
FauNDI	CATATG	1 cut(s)	546
Fnu4HI	GCNGC	5 cut(s)	226, 259, 371, 557, 779
FokI	GGATG	2 cut(s)	194, 917
Fsp4HI	GCNGC	5 cut(s)	226, 259, 371, 557, 779
FspBI	CTAG	4 cut(s)	17, 229, 382, 905
GluI	GCNGC	5 cut(s)	226, 259, 371, 557, 779
GsuI	CTGGAG	1 cut(s)	775
HaeIII	GGCC	3 cut(s)	380, 837, 993
HapII	CCGG	2 cut(s)	531, 834
Hin1II	CATG	4 cut(s)	279, 341, 523, 540
HindIII	AAGCTT	2 cut(s)	288, 431
HinfI	GANTC	6 cut(s)	510, 663, 817, 877, 909, 918
HpaII	CCGG	2 cut(s)	531, 834
HphI	GGTGA	3 cut(s)	195, 976, 1013
Hpy166II	GTNNAC	1 cut(s)	606
Hpy188III	TCNNGA	2 cut(s)	107, 562
Hpy8I	GTNNAC	1 cut(s)	606
HpyAV	CCTTC	5 cut(s)	43, 57, 305, 512, 840
HpyCH4III	ACNGT	5 cut(s)	39, 120, 238, 610, 1019
HpyCH4V	TGCA	7 cut(s)	156, 279, 361, 393, 781, 812, 966
HpyF10VI	GCNNNNNNNGC	3 cut(s)	367, 778, 963
HpyF3I	CTNAG	2 cut(s)	563, 794
Hsp92II	CATG	4 cut(s)	279, 341, 523, 540
Kzo9I	GATC	4 cut(s)	28, 263, 632, 872
LmnI	GCTCC	3 cut(s)	367, 564, 900
Lsp1109I	GCAGC	5 cut(s)	212, 245, 382, 543, 765
LweI	GCATC	1 cut(s)	591
MaeI	CTAG	4 cut(s)	17, 229, 382, 905
MaeIII	GTNAC	3 cut(s)	522, 550, 1019
MalI	GATC	4 cut(s)	30, 265, 634, 874
MboI	GATC	4 cut(s)	28, 263, 632, 872
MboII	GAAGA	2 cut(s)	18, 606
MflI	RGATCY	1 cut(s)	632
MhlI	GDGCHC	3 cut(s)	96, 544, 654
MluCI	AATT	7 cut(s)	122, 136, 141, 186, 493, 727, 788
MlyI	GAGTC	2 cut(s)	519, 912
MmeI	TCCRAC	1 cut(s)	500
Mph1103I	ATGCAT	1 cut(s)	814
MroXI	GAANNNNTTC	1 cut(s)	315
MseI	TTAA	2 cut(s)	353, 637
MslI	CAYNNNNRTG	2 cut(s)	336, 587
MspI	CCGG	2 cut(s)	531, 834
MspR9I	CCNGG	3 cut(s)	531, 532, 990
Mva1269I	GAATGC	1 cut(s)	781
MvaI	CCWGG	1 cut(s)	990
MwoI	GCNNNNNNNGC	3 cut(s)	367, 778, 963
NciI	CCSGG	2 cut(s)	531, 532
NcoI	CCATGG	1 cut(s)	337
NdeI	CATATG	1 cut(s)	546
NdeII	GATC	4 cut(s)	28, 263, 632, 872
NlaIII	CATG	4 cut(s)	279, 341, 523, 540
NlaIV	GGNNCC	4 cut(s)	95, 456, 746, 902
NmuCI	GTSAC	2 cut(s)	522, 1019
NsiI	ATGCAT	1 cut(s)	814
NspI	RCATGY	1 cut(s)	523
PaeR7I	CTCGAG	2 cut(s)	82, 374
PceI	AGGCCT	1 cut(s)	380
PciI	ACATGT	1 cut(s)	519
PctI	GAATGC	1 cut(s)	781
PdmI	GAANNNNTTC	1 cut(s)	315
PfeI	GAWTC	4 cut(s)	663, 817, 877, 909
PkrI	GCNGC	5 cut(s)	227, 260, 372, 558, 780
PleI	GAGTC	2 cut(s)	518, 912
PpsI	GAGTC	2 cut(s)	518, 912
PpuMI	RGGWCCY	1 cut(s)	455
PscI	ACATGT	1 cut(s)	519
Psp5II	RGGWCCY	1 cut(s)	455
Psp6I	CCWGG	1 cut(s)	988
PspGI	CCWGG	1 cut(s)	988
PspN4I	GGNNCC	4 cut(s)	95, 456, 746, 902
PspPI	GGNCC	3 cut(s)	455, 499, 744
PspPPI	RGGWCCY	1 cut(s)	455
PspXI	VCTCGAGB	2 cut(s)	82, 374
PsuI	RGATCY	1 cut(s)	632
RsaI	GTAC	1 cut(s)	607
RsaNI	GTAC	1 cut(s)	606
RseI	CAYNNNNRTG	2 cut(s)	336, 587
SaqAI	TTAA	2 cut(s)	353, 637
SatI	GCNGC	5 cut(s)	226, 259, 371, 557, 779
Sau3AI	GATC	4 cut(s)	28, 263, 632, 872
Sau96I	GGNCC	3 cut(s)	455, 499, 744
SchI	GAGTC	2 cut(s)	519, 912
ScrFI	CCNGG	3 cut(s)	531, 532, 990
SduI	GDGCHC	3 cut(s)	96, 544, 654
SfaNI	GCATC	1 cut(s)	591
SfcI	CTRYAG	1 cut(s)	417
Sfr274I	CTCGAG	2 cut(s)	82, 374
SinI	GGWCC	3 cut(s)	455, 499, 744
SlaI	CTCGAG	2 cut(s)	82, 374
SmaI	CCCGGG	1 cut(s)	532
SmiMI	CAYNNNNRTG	2 cut(s)	336, 587
SmlI	CTYRAG	2 cut(s)	82, 374
SmoI	CTYRAG	2 cut(s)	82, 374
Sse9I	AATT	7 cut(s)	122, 136, 141, 186, 493, 727, 788
SseBI	AGGCCT	1 cut(s)	380
SsiI	CCGC	1 cut(s)	464
SspMI	CTAG	4 cut(s)	17, 229, 382, 905
StuI	AGGCCT	1 cut(s)	380
StyD4I	CCNGG	3 cut(s)	529, 530, 988
StyI	CCWWGG	3 cut(s)	337, 904, 948
TaaI	ACNGT	5 cut(s)	39, 120, 238, 610, 1019
TaqI	TCGA	6 cut(s)	83, 375, 750, 875, 916, 1026
TasI	AATT	7 cut(s)	122, 136, 141, 186, 493, 727, 788
TfiI	GAWTC	4 cut(s)	663, 817, 877, 909
Tru1I	TTAA	2 cut(s)	353, 637
Tru9I	TTAA	2 cut(s)	353, 637
TseFI	GTSAC	2 cut(s)	522, 1019
TseI	GCWGC	5 cut(s)	225, 258, 370, 556, 778
Tsp45I	GTSAC	2 cut(s)	522, 1019
TspDTI	ATGAA	3 cut(s)	264, 859, 902
TspMI	CCCGGG	1 cut(s)	530
VpaK11BI	GGWCC	3 cut(s)	455, 499, 744
XapI	RAATTY	4 cut(s)	141, 186, 493, 788
XceI	RCATGY	1 cut(s)	523
XhoI	CTCGAG	2 cut(s)	82, 374
XmaI	CCCGGG	1 cut(s)	530
XmaJI	CCTAGG	1 cut(s)	904
XmnI	GAANNNNTTC	1 cut(s)	315
XspI	CTAG	4 cut(s)	17, 229, 382, 905
Zsp2I	ATGCAT	1 cut(s)	814

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.