Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0015783

Physical Location & Seq

Genomic Coordinates Reverse (-)

46144842 .. 46147530

Gene Structure 2689 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG249600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 891 bp

ATGGGGAATTGCTGGTTTTCTTCTTCTTCAGCTGAAGACCCAACACCAACTACTACTGGTCATCTCAGTACAGTGCCGAGTAGCATATCACAATCAATGAGTAATGCCACATCCACTTCCGTGGGGAGCACTATATCAAGGAATAGCCAGTTTTCGGAGAGAAGTGGGGGTTCAGTTGTTCAGCCACTTCCATGGGATATACGGCTTAAAGTTGCAATAGGAGCAGCTCGAGGCCTAGCATTTTTGCATACATCAGAGAAGCAAGTAATCTATAGAGATTTCAAAGCTTCCAATATATTACTTGACGGGTCCTTTACCGCCAAGATATCCGACTTTGGCTTGGCAAAATTTGGTCCTTCAGAGAGTCAATCACACGTGACAACCCGGGTCATGGGCACATATGGTTACGCTGCTCCTGAGTATGTTGCCACAGGGCATCTCTATGTGAAGAGTGATGTGTACGGTTTTGGTGTTGTGTTGGTTGAGATCTTAACAGGCTTACGGGCACTTGATACGAATCGTCCAAGTGGAAAACATAATCTTGTGGAGTGGGTAAAACCATATTTATCAGATAAAAGAAAATTGAAAGGCATTATGGACCCTCGACTGGAGGGAAAGTATCCAGCCAAAGCTGCATTCCGAATTTCTCAGCTTGCTCTAAAATGCATTGAATCTGAACACAAAAACCGGCCATCAATGAAGGTTGTTGTGGAGACTTTGGAAAGGATCGAATCTGTCAATGAACATATAAGGGAGCCTAGGATTCGTTCGACTCATTCTACTCATCCTATGGCTCATCGCCAAGGTCAGGCACCTTTGCACCATCGTTCTCCACTTCACCCCAGGTCAGATGGCAATCAAAACTACCAACAGTCACCTCGAACGAGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase_Tyr

Protein Analysis

296

Amino Acids

32.71

Weight (kDa)

9.76

Isoelectric Point (pI)

46.78

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PK_Tyr_Ser-Thr	PF07714	64 - 240	5.5e-24	Protein tyrosine and serine/threonine kinase
Pkinase	PF00069	70 - 238	2.4e-25	Protein kinase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015783)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G17220 AT2G17220
fragaria_vesca	FvH4_2g16680
malus_domestica	MD05G1135000.v1.1 MD10G1140500.v1.1
prunus_persica	Prupe.8G178900_v2.0.a1
pyrus_communis	pycom05g13160 pycom10g11910
rosa_chinensis	RchiOBHm_Chr6g0280821
rosa_multiflora	Rmu_co8480431.1_g000001
rosa_roxburghii	Rroxscaffold_7G00187600
rosa_rugosa	Rorug06G0134700
rosa_samantha	Rh6BG249600 Rh6DG242400
rosa_wichuraiana	Rw6G021440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	811
AciI	CCGC	1 cut(s)	318
AclWI	GGATC	1 cut(s)	734
AcoI	YGGCCR	1 cut(s)	689
AcsI	RAATTY	2 cut(s)	347, 642
AcuI	CTGAAG	3 cut(s)	12, 54, 342
AcvI	CACGTG	1 cut(s)	376
AfaI	GTAC	2 cut(s)	70, 461
AfiI	CCNNNNNNNGG	4 cut(s)	154, 391, 607, 808
AflIII	ACRYGT	1 cut(s)	373
AgsI	TTSAA	3 cut(s)	283, 586, 671
AjnI	CCWGG	1 cut(s)	842
AjuI	GAANNNNNNNTTGG	2 cut(s)	620, 652
AleI	CACNNNNGTG	1 cut(s)	119
AluBI	AGCT	5 cut(s)	32, 227, 287, 632, 652
AluI	AGCT	5 cut(s)	32, 227, 287, 632, 652
Alw21I	GWGCWC	1 cut(s)	131
Alw26I	GTCTC	1 cut(s)	707
AlwI	GGATC	1 cut(s)	734
Ama87I	CYCGRG	2 cut(s)	228, 384
AoxI	GGCC	2 cut(s)	232, 689
ApeKI	GCWGC	3 cut(s)	224, 410, 632
ApoI	RAATTY	2 cut(s)	347, 642
AspA2I	CCTAGG	1 cut(s)	758
AspS9I	GGNCC	3 cut(s)	309, 353, 598
AsuC2I	CCSGG	2 cut(s)	385, 386
AsuHPI	GGTGA	2 cut(s)	830, 867
AvaI	CYCGRG	2 cut(s)	228, 384
AvaII	GGWCC	3 cut(s)	309, 353, 598
AvrII	CCTAGG	1 cut(s)	758
BaeGI	GKGCMC	2 cut(s)	398, 508
BanI	GGYRCC	1 cut(s)	811
BbrPI	CACGTG	1 cut(s)	376
BbsI	GAAGAC	1 cut(s)	42
Bbv12I	GWGCWC	1 cut(s)	131
BbvI	GCAGC	3 cut(s)	236, 397, 619
BccI	CCATC	3 cut(s)	700, 831, 845
BceAI	ACGGC	1 cut(s)	218
BciT130I	CCWGG	1 cut(s)	844
BciVI	GTATCC	1 cut(s)	630
BcnI	CCSGG	2 cut(s)	385, 386
BcoDI	GTCTC	1 cut(s)	707
BfaI	CTAG	2 cut(s)	236, 759
BfmI	CTRYAG	1 cut(s)	271
BfuI	GTATCC	1 cut(s)	630
BglII	AGATCT	1 cut(s)	486
BisI	GCNGC	3 cut(s)	225, 411, 633
BlnI	CCTAGG	1 cut(s)	758
BlsI	GCNGC	3 cut(s)	226, 412, 634
Bme1390I	CCNGG	3 cut(s)	385, 386, 844
Bme18I	GGWCC	3 cut(s)	309, 353, 598
BmeT110I	CYCGRG	2 cut(s)	228, 384
BmgT120I	GGNCC	3 cut(s)	309, 353, 598
BmiI	GGNNCC	4 cut(s)	310, 600, 756, 813
BmrFI	CCNGG	3 cut(s)	385, 386, 844
BmsI	GCATC	1 cut(s)	445
BpiI	GAAGAC	1 cut(s)	42
BpmI	CTGGAG	1 cut(s)	629
BpuMI	CCSGG	2 cut(s)	385, 386
BsaAI	YACGTR	1 cut(s)	376
BsaBI	GATNNNNATC	2 cut(s)	516, 855
BsaJI	CCNNGG	6 cut(s)	120, 191, 384, 758, 802, 842
BsaXI	ACNNNNNCTCC	2 cut(s)	602, 632
Bsc4I	CCNNNNNNNGG	4 cut(s)	154, 391, 607, 808
Bse118I	RCCGGY	1 cut(s)	687
Bse1I	ACTGG	3 cut(s)	61, 148, 612
Bse8I	GATNNNNATC	2 cut(s)	516, 855
BseBI	CCWGG	1 cut(s)	844
BseDI	CCNNGG	6 cut(s)	120, 191, 384, 758, 802, 842
BseGI	GGATG	2 cut(s)	110, 784
BseJI	GATNNNNATC	2 cut(s)	516, 855
BseLI	CCNNNNNNNGG	4 cut(s)	154, 391, 607, 808
BseMII	CTCAG	3 cut(s)	79, 408, 662
BseNI	ACTGG	3 cut(s)	61, 148, 612
BseSI	GKGCMC	2 cut(s)	398, 508
BseXI	GCAGC	3 cut(s)	236, 397, 619
BshFI	GGCC	2 cut(s)	234, 691
BshNI	GGYRCC	1 cut(s)	811
BsiHKAI	GWGCWC	1 cut(s)	131
BsiHKCI	CYCGRG	2 cut(s)	228, 384
BsiSI	CCGG	2 cut(s)	385, 688
BslI	CCNNNNNNNGG	4 cut(s)	154, 391, 607, 808
BsmAI	GTCTC	1 cut(s)	707
BsmI	GAATGC	1 cut(s)	635
BsnI	GGCC	2 cut(s)	234, 691
BsoBI	CYCGRG	2 cut(s)	228, 384
Bsp1286I	GDGCHC	3 cut(s)	131, 398, 508
Bsp143I	GATC	2 cut(s)	486, 726
Bsp19I	CCATGG	1 cut(s)	191
BspACI	CCGC	1 cut(s)	318
BspANI	GGCC	2 cut(s)	234, 691
BspCNI	CTCAG	3 cut(s)	78, 409, 661
BspLI	GGNNCC	4 cut(s)	310, 600, 756, 813
BspPI	GGATC	1 cut(s)	734
BspT107I	GGYRCC	1 cut(s)	811
BsrFI	RCCGGY	1 cut(s)	687
BsrI	ACTGG	3 cut(s)	61, 148, 612
BssAI	RCCGGY	1 cut(s)	687
BssECI	CCNNGG	6 cut(s)	120, 191, 384, 758, 802, 842
BssMI	GATC	2 cut(s)	486, 726
BssT1I	CCWWGG	3 cut(s)	191, 758, 802
Bst2UI	CCWGG	1 cut(s)	844
Bst4CI	ACNGT	3 cut(s)	73, 464, 873
Bst6I	CTCTTC	1 cut(s)	443
BstBAI	YACGTR	1 cut(s)	376
BstC8I	GCNNGC	1 cut(s)	654
BstDEI	CTNAG	3 cut(s)	65, 417, 648
BstDSI	CCRYGG	2 cut(s)	120, 191
BstF5I	GGATG	2 cut(s)	110, 784
BstKTI	GATC	2 cut(s)	489, 729
BstMAI	GTCTC	1 cut(s)	707
BstMBI	GATC	2 cut(s)	486, 726
BstMWI	GCNNNNNNNGC	2 cut(s)	221, 632
BstNI	CCWGG	1 cut(s)	844
BstSCI	CCNGG	3 cut(s)	383, 384, 842
BstSFI	CTRYAG	1 cut(s)	271
BstSLI	GKGCMC	2 cut(s)	398, 508
BstV1I	GCAGC	3 cut(s)	236, 397, 619
BstV2I	GAAGAC	1 cut(s)	42
BstX2I	RGATCY	1 cut(s)	486
BstXI	CCANNNNNNTGG	2 cut(s)	121, 192
BstYI	RGATCY	1 cut(s)	486
BsuI	GTATCC	1 cut(s)	630
BsuRI	GGCC	2 cut(s)	234, 691
BtgI	CCRYGG	2 cut(s)	120, 191
BtgZI	GCGATG	1 cut(s)	782
BtsCI	GGATG	2 cut(s)	110, 784
BtsIMutI	CAGTG	1 cut(s)	78
Cac8I	GCNNGC	1 cut(s)	654
Cfr10I	RCCGGY	1 cut(s)	687
Cfr13I	GGNCC	3 cut(s)	309, 353, 598
Cfr9I	CCCGGG	1 cut(s)	384
Csp6I	GTAC	2 cut(s)	69, 460
CviAII	CATG	2 cut(s)	192, 391
CviQI	GTAC	2 cut(s)	69, 460
DdeI	CTNAG	3 cut(s)	65, 417, 648
DpnI	GATC	2 cut(s)	488, 728
DpnII	GATC	2 cut(s)	486, 726
EaeI	YGGCCR	1 cut(s)	689
Eam1104I	CTCTTC	1 cut(s)	443
EarI	CTCTTC	1 cut(s)	443
Eco130I	CCWWGG	3 cut(s)	191, 758, 802
Eco147I	AGGCCT	1 cut(s)	234
Eco32I	GATATC	1 cut(s)	327
Eco47I	GGWCC	3 cut(s)	309, 353, 598
Eco57I	CTGAAG	3 cut(s)	12, 54, 342
Eco72I	CACGTG	1 cut(s)	376
Eco88I	CYCGRG	2 cut(s)	228, 384
EcoO109I	RGGNCCY	1 cut(s)	309
EcoRII	CCWGG	1 cut(s)	842
EcoRV	GATATC	1 cut(s)	327
EcoT14I	CCWWGG	3 cut(s)	191, 758, 802
EcoT22I	ATGCAT	1 cut(s)	668
ErhI	CCWWGG	3 cut(s)	191, 758, 802
FaeI	CATG	2 cut(s)	195, 394
FatI	CATG	2 cut(s)	191, 390
FauNDI	CATATG	1 cut(s)	400
Fnu4HI	GCNGC	3 cut(s)	225, 411, 633
FokI	GGATG	2 cut(s)	97, 771
Fsp4HI	GCNGC	3 cut(s)	225, 411, 633
FspBI	CTAG	2 cut(s)	236, 759
GluI	GCNGC	3 cut(s)	225, 411, 633
GsuI	CTGGAG	1 cut(s)	629
HaeIII	GGCC	2 cut(s)	234, 691
HapII	CCGG	2 cut(s)	385, 688
Hin1II	CATG	2 cut(s)	195, 394
HindIII	AAGCTT	1 cut(s)	285
HinfI	GANTC	6 cut(s)	364, 517, 671, 731, 763, 772
HpaII	CCGG	2 cut(s)	385, 688
HphI	GGTGA	2 cut(s)	830, 867
Hpy166II	GTNNAC	1 cut(s)	460
Hpy188I	TCNGA	8 cut(s)	157, 256, 331, 361, 571, 641, 676, 850
Hpy188III	TCNNGA	1 cut(s)	416
Hpy8I	GTNNAC	1 cut(s)	460
HpyAV	CCTTC	2 cut(s)	366, 694
HpyCH4III	ACNGT	3 cut(s)	73, 464, 873
HpyCH4IV	ACGT	1 cut(s)	375
HpyCH4V	TGCA	5 cut(s)	215, 247, 635, 666, 820
HpyF10VI	GCNNNNNNNGC	2 cut(s)	221, 632
HpyF3I	CTNAG	3 cut(s)	65, 417, 648
HpySE526I	ACGT	1 cut(s)	375
Hsp92II	CATG	2 cut(s)	195, 394
Kzo9I	GATC	2 cut(s)	486, 726
LmnI	GCTCC	4 cut(s)	126, 221, 418, 754
Lsp1109I	GCAGC	3 cut(s)	236, 397, 619
LweI	GCATC	1 cut(s)	445
MaeI	CTAG	2 cut(s)	236, 759
MaeII	ACGT	1 cut(s)	375
MaeIII	GTNAC	3 cut(s)	376, 404, 873
MalI	GATC	2 cut(s)	488, 728
MboI	GATC	2 cut(s)	486, 726
MboII	GAAGA	5 cut(s)	12, 15, 18, 47, 460
MflI	RGATCY	1 cut(s)	486
MhlI	GDGCHC	3 cut(s)	131, 398, 508
MluCI	AATT	4 cut(s)	7, 347, 581, 642
MlyI	GAGTC	2 cut(s)	373, 766
MmeI	TCCRAC	1 cut(s)	354
MnlI	CCTC	5 cut(s)	224, 604, 612, 879, 888
Mph1103I	ATGCAT	1 cut(s)	668
MseI	TTAA	2 cut(s)	207, 491
MslI	CAYNNNNRTG	3 cut(s)	119, 190, 441
MspA1I	CMGCKG	1 cut(s)	32
MspI	CCGG	2 cut(s)	385, 688
MspR9I	CCNGG	3 cut(s)	385, 386, 844
Mva1269I	GAATGC	1 cut(s)	635
MvaI	CCWGG	1 cut(s)	844
MwoI	GCNNNNNNNGC	2 cut(s)	221, 632
NciI	CCSGG	2 cut(s)	385, 386
NcoI	CCATGG	1 cut(s)	191
NdeI	CATATG	1 cut(s)	400
NdeII	GATC	2 cut(s)	486, 726
NlaIII	CATG	2 cut(s)	195, 394
NlaIV	GGNNCC	4 cut(s)	310, 600, 756, 813
NmeAIII	GCCGAG	1 cut(s)	102
NmuCI	GTSAC	2 cut(s)	376, 873
NsiI	ATGCAT	1 cut(s)	668
OliI	CACNNNNGTG	1 cut(s)	119
PaeR7I	CTCGAG	1 cut(s)	228
PceI	AGGCCT	1 cut(s)	234
PctI	GAATGC	1 cut(s)	635
PfeI	GAWTC	4 cut(s)	517, 671, 731, 763
PkrI	GCNGC	3 cut(s)	226, 412, 634
PleI	GAGTC	2 cut(s)	372, 766
PmaCI	CACGTG	1 cut(s)	376
PmlI	CACGTG	1 cut(s)	376
PpsI	GAGTC	2 cut(s)	372, 766
Ppu21I	YACGTR	1 cut(s)	376
PpuMI	RGGWCCY	1 cut(s)	309
Psp5II	RGGWCCY	1 cut(s)	309
Psp6I	CCWGG	1 cut(s)	842
PspCI	CACGTG	1 cut(s)	376
PspGI	CCWGG	1 cut(s)	842
PspN4I	GGNNCC	4 cut(s)	310, 600, 756, 813
PspPI	GGNCC	3 cut(s)	309, 353, 598
PspPPI	RGGWCCY	1 cut(s)	309
PspXI	VCTCGAGB	1 cut(s)	228
PsuI	RGATCY	1 cut(s)	486
PvuII	CAGCTG	1 cut(s)	32
RsaI	GTAC	2 cut(s)	70, 461
RsaNI	GTAC	2 cut(s)	69, 460
RseI	CAYNNNNRTG	3 cut(s)	119, 190, 441
SaqAI	TTAA	2 cut(s)	207, 491
SatI	GCNGC	3 cut(s)	225, 411, 633
Sau3AI	GATC	2 cut(s)	486, 726
Sau96I	GGNCC	3 cut(s)	309, 353, 598
SchI	GAGTC	2 cut(s)	373, 766
ScrFI	CCNGG	3 cut(s)	385, 386, 844
SduI	GDGCHC	3 cut(s)	131, 398, 508
SfaNI	GCATC	1 cut(s)	445
SfcI	CTRYAG	1 cut(s)	271
Sfr274I	CTCGAG	1 cut(s)	228
SinI	GGWCC	3 cut(s)	309, 353, 598
SlaI	CTCGAG	1 cut(s)	228
SmaI	CCCGGG	1 cut(s)	386
SmiMI	CAYNNNNRTG	3 cut(s)	119, 190, 441
SmlI	CTYRAG	1 cut(s)	228
SmoI	CTYRAG	1 cut(s)	228
Sse9I	AATT	4 cut(s)	7, 347, 581, 642
SseBI	AGGCCT	1 cut(s)	234
SsiI	CCGC	1 cut(s)	318
SspMI	CTAG	2 cut(s)	236, 759
StuI	AGGCCT	1 cut(s)	234
StyD4I	CCNGG	3 cut(s)	383, 384, 842
StyI	CCWWGG	3 cut(s)	191, 758, 802
TaaI	ACNGT	3 cut(s)	73, 464, 873
TaiI	ACGT	1 cut(s)	378
TaqI	TCGA	5 cut(s)	229, 604, 729, 770, 880
TasI	AATT	4 cut(s)	7, 347, 581, 642
TatI	WGTACW	1 cut(s)	68
TfiI	GAWTC	4 cut(s)	517, 671, 731, 763
Tru1I	TTAA	2 cut(s)	207, 491
Tru9I	TTAA	2 cut(s)	207, 491
TscAI	CASTG	1 cut(s)	78
TseFI	GTSAC	2 cut(s)	376, 873
TseI	GCWGC	3 cut(s)	224, 410, 632
Tsp45I	GTSAC	2 cut(s)	376, 873
TspDTI	ATGAA	2 cut(s)	713, 756
TspGWI	ACGGA	1 cut(s)	109
TspMI	CCCGGG	1 cut(s)	384
TspRI	CASTG	1 cut(s)	78
VpaK11BI	GGWCC	3 cut(s)	309, 353, 598
XapI	RAATTY	2 cut(s)	347, 642
XhoI	CTCGAG	1 cut(s)	228
XmaI	CCCGGG	1 cut(s)	384
XmaJI	CCTAGG	1 cut(s)	758
XspI	CTAG	2 cut(s)	236, 759
Zsp2I	ATGCAT	1 cut(s)	668

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.