RchiOBHm_Chr6g0285211

serine-threonine kinase receptor-associated protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0019030
Physical Location & Seq
Forward (+)
48564369 .. 48565256
888 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ25582

Sequence Viewer

Length: 888 bp
ATGTTTCAGTCGTGGATCTTTCCTATAGTTCAGTTACTGCCGAGGGTACCTTCGTCCTTAGTGCAAGTAAAGATAGCACAGCTATGCTTTCTAGGGAAGATGGAACTCACTGACGCTCCAATATGGAGTTGTTCCTTGGAGCGGAATGTTGTGTATGCTGCAACTGCATCAGCGGATTGCACTGTGAAGATTTGGCGTGGAATAGAACATGAGGATGGTCTACCGAAAGTACTAGAAACACATCAAAACCCTTACATTGTCCGAGCTTGTGCTTTTTGGGAGACCATAGCTCTAGATTTACTAATTAGAGATATCAATGGACACATATCGATATTTCGGTTGGGTTATGATCAGGCTTCACTGTATACAATCCAACCTGTGAAAAATCATGATAAGGTTGCTGGATCAATCAGGGCTGTAGGATGCCTATCCCCTAATACTTTTGTGAGCACATATAGTAATATGACGGGTGTTAGATTTTGGGATTCAAGATGTCTGACTTTTTTGGCTCACAAATTGGAGACTCGTGCAGCTGTACCCAATTGTGAAGTGAGTCGAGATGAAACCAGTATTACTCTTACTGGTATCCGTGTTGGTGTGCAAGTTTTGACGCTTGATAATAATCAGTGGACTACGCAACATTATCTAATAAGCTGTAGAACAGCTTCTCTATACAAGCATCCACGTTCCGGAAATATAATTGCTGCAAGAGGAGATGATGGTTATGTTCATTTATACGATCATAATCATGTTGAGATTGATTCCAATAATGTTGCTGAAAGTCATCCTATTCAATGTGTGCGATTTTCGCCAACAGAGAGATATTATGCATCGGGACATAAGGATCACCAGCCTAAGATGACGAGAGTGCGAGACGGTTTGTGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03013 map03013
Pfam Domains
Protein Families
WD40

Protein Analysis

295

Amino Acids

33.4

Weight (kDa)

7.64

Isoelectric Point (pI)

39.09

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Beta-prop_THOC3 PF25174 145 - 283 3.9e-08 THOC3 beta-propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0019030)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr6g0285211
rosa_laevigata RLG00000012661
rosa_multiflora Rmu_sc0005710.1_g000002 Rmu_sc0006801.1_g000008 Rmu_sc0006801.1_g000009
rosa_roxburghii Rroxscaffold_7G00183410
rosa_samantha Rh6AG283500 Rh6AG283600 Rh6CG286100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 46
AccB1I GGYRCC 1 cut(s) 46
AccBSI CCGCTC 1 cut(s) 142
AccI GTMKAC 2 cut(s) 220, 365
AccIII TCCGGA 1 cut(s) 689
AciI CCGC 2 cut(s) 142, 173
AclWI GGATC 3 cut(s) 23, 412, 852
AfaI GTAC 3 cut(s) 48, 231, 537
AfiI CCNNNNNNNGG 2 cut(s) 141, 689
AgsI TTSAA 2 cut(s) 489, 794
AluBI AGCT 6 cut(s) 82, 266, 290, 533, 654, 665
AluI AGCT 6 cut(s) 82, 266, 290, 533, 654, 665
Alw21I GWGCWC 1 cut(s) 452
Alw26I GTCTC 3 cut(s) 275, 515, 867
AlwI GGATC 3 cut(s) 23, 412, 852
AlwNI CAGNNNCTG 1 cut(s) 37
Aor13HI TCCGGA 1 cut(s) 689
ApeKI GCWGC 3 cut(s) 158, 530, 704
Asp700I GAANNNNTTC 1 cut(s) 664
Asp718I GGTACC 1 cut(s) 46
AsuHPI GGTGA 1 cut(s) 839
BaeI ACNNNNGTAYC 2 cut(s) 38, 71
BanI GGYRCC 1 cut(s) 46
BarI GAAGNNNNNNTAC 2 cut(s) 649, 681
BauI CACGAG 1 cut(s) 525
Bbv12I GWGCWC 1 cut(s) 452
BbvI GCAGC 3 cut(s) 145, 542, 691
BccI CCATC 3 cut(s) 94, 209, 713
BciVI GTATCC 1 cut(s) 596
BclI TGATCA 1 cut(s) 349
BcoDI GTCTC 3 cut(s) 275, 515, 867
BfaI CTAG 3 cut(s) 92, 233, 293
BfmI CTRYAG 3 cut(s) 24, 417, 655
BfuI GTATCC 1 cut(s) 596
BisI GCNGC 3 cut(s) 159, 531, 705
BlsI GCNGC 3 cut(s) 160, 532, 706
BmcAI AGTACT 1 cut(s) 231
BmiI GGNNCC 1 cut(s) 48
BmsI GCATC 4 cut(s) 176, 413, 688, 839
Bsa29I ATCGAT 1 cut(s) 329
BsaBI GATNNNNATC 3 cut(s) 427, 621, 744
BsaI GGTCTC 1 cut(s) 275
BsaJI CCNNGG 2 cut(s) 41, 135
BsaWI WCCGGW 1 cut(s) 689
BsaXI ACNNNNNCTCC 2 cut(s) 100, 130
Bsc4I CCNNNNNNNGG 2 cut(s) 141, 689
Bse1I ACTGG 2 cut(s) 567, 586
Bse8I GATNNNNATC 3 cut(s) 427, 621, 744
BseAI TCCGGA 1 cut(s) 689
BseCI ATCGAT 1 cut(s) 329
BseDI CCNNGG 2 cut(s) 41, 135
BseGI GGATG 4 cut(s) 220, 428, 679, 784
BseJI GATNNNNATC 3 cut(s) 427, 621, 744
BseLI CCNNNNNNNGG 2 cut(s) 141, 689
BseNI ACTGG 2 cut(s) 567, 586
BseRI GAGGAG 1 cut(s) 726
BseXI GCAGC 3 cut(s) 145, 542, 691
BsgI GTGCAG 1 cut(s) 549
BshNI GGYRCC 1 cut(s) 46
BshVI ATCGAT 1 cut(s) 329
BsiHKAI GWGCWC 1 cut(s) 452
BsiSI CCGG 1 cut(s) 690
BslFI GGGAC 1 cut(s) 849
BslI CCNNNNNNNGG 2 cut(s) 141, 689
BsmAI GTCTC 3 cut(s) 275, 515, 867
BsmBI CGTCTC 1 cut(s) 867
BsmFI GGGAC 1 cut(s) 849
Bso31I GGTCTC 1 cut(s) 275
Bsp1286I GDGCHC 1 cut(s) 452
Bsp13I TCCGGA 1 cut(s) 689
Bsp143I GATC 5 cut(s) 15, 349, 404, 739, 844
BspACI CCGC 2 cut(s) 142, 173
BspDI ATCGAT 1 cut(s) 329
BspEI TCCGGA 1 cut(s) 689
BspHI TCATGA 1 cut(s) 388
BspLI GGNNCC 1 cut(s) 48
BspPI GGATC 3 cut(s) 23, 412, 852
BspT107I GGYRCC 1 cut(s) 46
BspTNI GGTCTC 1 cut(s) 275
BsrBI CCGCTC 1 cut(s) 142
BsrI ACTGG 2 cut(s) 567, 586
BssECI CCNNGG 2 cut(s) 41, 135
BssMI GATC 5 cut(s) 15, 349, 404, 739, 844
BssNAI GTATAC 1 cut(s) 366
BssSI CACGAG 1 cut(s) 525
BssT1I CCWWGG 1 cut(s) 135
Bst1107I GTATAC 1 cut(s) 366
Bst2BI CACGAG 1 cut(s) 525
Bst4CI ACNGT 3 cut(s) 184, 363, 878
BstDEI CTNAG 2 cut(s) 58, 855
BstF5I GGATG 4 cut(s) 220, 428, 679, 784
BstKTI GATC 5 cut(s) 18, 352, 407, 742, 847
BstMAI GTCTC 3 cut(s) 275, 515, 867
BstMBI GATC 5 cut(s) 15, 349, 404, 739, 844
BstMWI GCNNNNNNNGC 2 cut(s) 164, 808
BstSFI CTRYAG 3 cut(s) 24, 417, 655
BstV1I GCAGC 3 cut(s) 145, 542, 691
BstX2I RGATCY 1 cut(s) 15
BstYI RGATCY 1 cut(s) 15
BstZ17I GTATAC 1 cut(s) 366
Bsu15I ATCGAT 1 cut(s) 329
BsuI GTATCC 1 cut(s) 596
BsuTUI ATCGAT 1 cut(s) 329
BtsCI GGATG 4 cut(s) 220, 428, 679, 784
BtsIMutI CAGTG 4 cut(s) 108, 180, 359, 632
CaiI CAGNNNCTG 1 cut(s) 37
CciI TCATGA 1 cut(s) 388
ClaI ATCGAT 1 cut(s) 329
CseI GACGC 2 cut(s) 122, 619
Csp6I GTAC 3 cut(s) 47, 230, 536
CviAII CATG 3 cut(s) 209, 389, 749
CviQI GTAC 3 cut(s) 47, 230, 536
DdeI CTNAG 2 cut(s) 58, 855
DpnI GATC 5 cut(s) 17, 351, 406, 741, 846
DpnII GATC 5 cut(s) 15, 349, 404, 739, 844
Eco130I CCWWGG 1 cut(s) 135
Eco31I GGTCTC 1 cut(s) 275
Eco32I GATATC 1 cut(s) 313
EcoRV GATATC 1 cut(s) 313
EcoT14I CCWWGG 1 cut(s) 135
EcoT22I ATGCAT 1 cut(s) 832
ErhI CCWWGG 1 cut(s) 135
Esp3I CGTCTC 1 cut(s) 867
FaeI CATG 3 cut(s) 212, 392, 752
FaqI GGGAC 1 cut(s) 849
FatI CATG 3 cut(s) 208, 388, 748
FbaI TGATCA 1 cut(s) 349
FblI GTMKAC 2 cut(s) 220, 365
Fnu4HI GCNGC 3 cut(s) 159, 531, 705
FokI GGATG 4 cut(s) 227, 435, 666, 771
Fsp4HI GCNGC 3 cut(s) 159, 531, 705
FspBI CTAG 3 cut(s) 92, 233, 293
GluI GCNGC 3 cut(s) 159, 531, 705
HapII CCGG 1 cut(s) 690
HgaI GACGC 2 cut(s) 122, 619
Hin1II CATG 3 cut(s) 212, 392, 752
HinfI GANTC 4 cut(s) 485, 523, 553, 761
HpaII CCGG 1 cut(s) 690
HphI GGTGA 1 cut(s) 839
Hpy166II GTNNAC 3 cut(s) 221, 366, 630
Hpy188I TCNGA 2 cut(s) 263, 498
Hpy188III TCNNGA 6 cut(s) 293, 389, 489, 557, 690, 834
Hpy8I GTNNAC 3 cut(s) 221, 366, 630
HpyAV CCTTC 1 cut(s) 60
HpyCH4III ACNGT 3 cut(s) 184, 363, 878
HpyCH4IV ACGT 1 cut(s) 685
HpyCH4V TGCA 8 cut(s) 64, 161, 167, 180, 530, 601, 707, 830
HpyF10VI GCNNNNNNNGC 2 cut(s) 164, 808
HpyF3I CTNAG 2 cut(s) 58, 855
HpySE526I ACGT 1 cut(s) 685
Hsp92II CATG 3 cut(s) 212, 392, 752
Kpn2I TCCGGA 1 cut(s) 689
KpnI GGTACC 1 cut(s) 50
Ksp22I TGATCA 1 cut(s) 349
Kzo9I GATC 5 cut(s) 15, 349, 404, 739, 844
LmnI GCTCC 2 cut(s) 121, 139
LpnPI CCDG 8 cut(s) 338, 387, 390, 397, 567, 580, 703, 863
Lsp1109I GCAGC 3 cut(s) 145, 542, 691
LweI GCATC 4 cut(s) 176, 413, 688, 839
MaeI CTAG 3 cut(s) 92, 233, 293
MaeII ACGT 1 cut(s) 685
MaeIII GTNAC 1 cut(s) 33
MalI GATC 5 cut(s) 17, 351, 406, 741, 846
MbiI CCGCTC 1 cut(s) 142
MboI GATC 5 cut(s) 15, 349, 404, 739, 844
MboII GAAGA 2 cut(s) 109, 199
MfeI CAATTG 1 cut(s) 541
MflI RGATCY 1 cut(s) 15
MhlI GDGCHC 1 cut(s) 452
MluCI AATT 4 cut(s) 303, 515, 541, 699
MlyI GAGTC 2 cut(s) 517, 562
MmeI TCCRAC 1 cut(s) 397
MnlI CCTC 3 cut(s) 36, 205, 704
Mph1103I ATGCAT 1 cut(s) 832
MroI TCCGGA 1 cut(s) 689
MroXI GAANNNNTTC 1 cut(s) 664
MslI CAYNNNNRTG 3 cut(s) 82, 213, 747
MspA1I CMGCKG 2 cut(s) 173, 533
MspI CCGG 1 cut(s) 690
MunI CAATTG 1 cut(s) 541
MwoI GCNNNNNNNGC 2 cut(s) 164, 808
NdeII GATC 5 cut(s) 15, 349, 404, 739, 844
NlaIII CATG 3 cut(s) 212, 392, 752
NlaIV GGNNCC 1 cut(s) 48
NmeAIII GCCGAG 1 cut(s) 66
NsiI ATGCAT 1 cut(s) 832
PagI TCATGA 1 cut(s) 388
PdmI GAANNNNTTC 1 cut(s) 664
PfeI GAWTC 2 cut(s) 485, 761
PkrI GCNGC 3 cut(s) 160, 532, 706
PleI GAGTC 2 cut(s) 517, 561
PpsI GAGTC 2 cut(s) 517, 561
PspN4I GGNNCC 1 cut(s) 48
PstNI CAGNNNCTG 1 cut(s) 37
PsuI RGATCY 1 cut(s) 15
PvuII CAGCTG 1 cut(s) 533
RsaI GTAC 3 cut(s) 48, 231, 537
RsaNI GTAC 3 cut(s) 47, 230, 536
RseI CAYNNNNRTG 3 cut(s) 82, 213, 747
SatI GCNGC 3 cut(s) 159, 531, 705
Sau3AI GATC 5 cut(s) 15, 349, 404, 739, 844
ScaI AGTACT 1 cut(s) 231
SchI GAGTC 2 cut(s) 517, 562
SduI GDGCHC 1 cut(s) 452
SfaNI GCATC 4 cut(s) 176, 413, 688, 839
SfcI CTRYAG 3 cut(s) 24, 417, 655
SmiMI CAYNNNNRTG 3 cut(s) 82, 213, 747
Sse9I AATT 4 cut(s) 303, 515, 541, 699
SsiI CCGC 2 cut(s) 142, 173
SspMI CTAG 3 cut(s) 92, 233, 293
StyI CCWWGG 1 cut(s) 135
TaaI ACNGT 3 cut(s) 184, 363, 878
TaiI ACGT 1 cut(s) 688
TaqI TCGA 2 cut(s) 329, 556
TasI AATT 4 cut(s) 303, 515, 541, 699
TatI WGTACW 1 cut(s) 229
TfiI GAWTC 2 cut(s) 485, 761
TscAI CASTG 4 cut(s) 115, 187, 366, 632
TseI GCWGC 3 cut(s) 158, 530, 704
TspDTI ATGAA 2 cut(s) 576, 719
TspGWI ACGGA 1 cut(s) 578
TspRI CASTG 4 cut(s) 115, 187, 366, 632
XbaI TCTAGA 1 cut(s) 292
XmiI GTMKAC 2 cut(s) 220, 365
XmnI GAANNNNTTC 1 cut(s) 664
XspI CTAG 3 cut(s) 92, 233, 293
ZrmI AGTACT 1 cut(s) 231
Zsp2I ATGCAT 1 cut(s) 832
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.