Rh6CG286100

serine-threonine kinase receptor-associated

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
OG0019030
Physical Location & Seq
Forward (+)
46393639 .. 46398891
5253 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6CG286100.1

Sequence Viewer

Length: 996 bp
ATGGAACTCACTGACGCTCCAATATGGAGTTGTTCCTTGGAGCGGAATGTTGTGTATGCTGCAACTGCATCAGCGGATTGCACTGTGAAGATTTGGCGTGGAATAGAACATGAGGATGGTCTACCGAAAGTACTAGAAACACATCAAAACCCTTACATTGTCCGAGCTTGTGCTTTTTGGGAGACCATAGCTCTAGATTTACTAATTAGAGATATCAATGGACACATATCGATATTTCGGTTGGGTTATGATCAGGCTTCACTGTATACAATCCAACCTGTGAAAAATCATGATAAGGTTGCTGGATCAATCAGGGCTGTAGGATGCCTATCCCCTAATACTTTTGTGAGCACATATAGTAATATGACGGGTGTTAGATTTTGGGATTCAAGATGTCTGACTTTTTTGGCTCACAAATTGGAGACTCGTGCAGCTGTACCCAATTGTGAAGTGAGTCGAGATGAAACCAGTATTACTCTTACTGGTATCCGTGTTGGTGTGCAAGTTTTGACGCTTGATAATAATCAGTGGACTACGCAACATTATCTAATAAGCTGTAGAACAGCTTCTCTATACAAGCATCCACGTTCCGGAAATATAATTGCTGCAAGAGGAGATGATGGTTATGTTCATTTATACGATCATAATCATGTTGAGATTGATTCCAATAATGTTGCTGAAAGTCATCCTATTCAATGTGTGCGATTTTCGCCAACAGAGAGATATTATGCATCGGGACATAAGGATCACCAGCCTAAGATGACGAGAGTGCGAGACGATGTGATGGAGTATAAGTTTCCAACCAAAATGGAAGACACTAGAACATACTACATTGGAAAGATAAAATTTTCTTATGGTGAATTAAGCGACGCAAAATTTTCCAAGTGCGATTATGAAATGATTGCAGCTAATAGCGTTAGATATGGTGAGAATGAGTTACCAACCAATATCACTCAAACATACTACTGGAAAAGAAAATTTTTGTACGATAAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03013 map03013
Pfam Domains
Protein Families
WD40

Protein Analysis

331

Amino Acids

37.98

Weight (kDa)

6.89

Isoelectric Point (pI)

34.48

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Beta-prop_THOC3 PF25174 112 - 251 3.2e-08 THOC3 beta-propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0019030)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr6g0285211
rosa_laevigata RLG00000012661
rosa_multiflora Rmu_sc0005710.1_g000002 Rmu_sc0006801.1_g000008 Rmu_sc0006801.1_g000009
rosa_roxburghii Rroxscaffold_7G00183410
rosa_samantha Rh6AG283500 Rh6AG283600 Rh6CG286100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 43
AccI GTMKAC 2 cut(s) 121, 266
AccIII TCCGGA 1 cut(s) 590
AciI CCGC 2 cut(s) 43, 74
AclWI GGATC 2 cut(s) 313, 753
AcsI RAATTY 3 cut(s) 845, 875, 977
AfaI GTAC 3 cut(s) 132, 438, 986
AfiI CCNNNNNNNGG 2 cut(s) 42, 590
AgsI TTSAA 2 cut(s) 390, 695
AluBI AGCT 6 cut(s) 167, 191, 434, 555, 566, 908
AluI AGCT 6 cut(s) 167, 191, 434, 555, 566, 908
Alw21I GWGCWC 1 cut(s) 353
Alw26I GTCTC 3 cut(s) 176, 416, 768
AlwI GGATC 2 cut(s) 313, 753
Aor13HI TCCGGA 1 cut(s) 590
ApeKI GCWGC 4 cut(s) 59, 431, 605, 905
ApoI RAATTY 3 cut(s) 845, 875, 977
Asp700I GAANNNNTTC 1 cut(s) 565
AsuHPI GGTGA 3 cut(s) 740, 869, 938
BarI GAAGNNNNNNTAC 2 cut(s) 550, 582
BauI CACGAG 1 cut(s) 426
BbsI GAAGAC 1 cut(s) 819
Bbv12I GWGCWC 1 cut(s) 353
BbvI GCAGC 4 cut(s) 46, 443, 592, 917
BccI CCATC 3 cut(s) 110, 614, 778
BciVI GTATCC 1 cut(s) 497
BclI TGATCA 1 cut(s) 250
BcoDI GTCTC 3 cut(s) 176, 416, 768
BfaI CTAG 3 cut(s) 134, 194, 819
BfmI CTRYAG 2 cut(s) 318, 556
BfuI GTATCC 1 cut(s) 497
BisI GCNGC 4 cut(s) 60, 432, 606, 906
BlsI GCNGC 4 cut(s) 61, 433, 607, 907
BmcAI AGTACT 1 cut(s) 132
BmsI GCATC 4 cut(s) 77, 314, 589, 740
BpiI GAAGAC 1 cut(s) 819
Bsa29I ATCGAT 1 cut(s) 230
BsaBI GATNNNNATC 3 cut(s) 328, 522, 645
BsaI GGTCTC 1 cut(s) 176
BsaJI CCNNGG 1 cut(s) 36
BsaWI WCCGGW 1 cut(s) 590
BsaXI ACNNNNNCTCC 3 cut(s) 31, 779, 809
Bsc4I CCNNNNNNNGG 2 cut(s) 42, 590
Bse1I ACTGG 3 cut(s) 468, 487, 971
Bse8I GATNNNNATC 3 cut(s) 328, 522, 645
BseAI TCCGGA 1 cut(s) 590
BseCI ATCGAT 1 cut(s) 230
BseDI CCNNGG 1 cut(s) 36
BseGI GGATG 4 cut(s) 121, 329, 580, 685
BseJI GATNNNNATC 3 cut(s) 328, 522, 645
BseLI CCNNNNNNNGG 2 cut(s) 42, 590
BseNI ACTGG 3 cut(s) 468, 487, 971
BseRI GAGGAG 1 cut(s) 627
BseXI GCAGC 4 cut(s) 46, 443, 592, 917
BsgI GTGCAG 1 cut(s) 450
BshVI ATCGAT 1 cut(s) 230
BsiHKAI GWGCWC 1 cut(s) 353
BsiSI CCGG 1 cut(s) 591
BslFI GGGAC 1 cut(s) 750
BslI CCNNNNNNNGG 2 cut(s) 42, 590
BsmAI GTCTC 3 cut(s) 176, 416, 768
BsmBI CGTCTC 1 cut(s) 768
BsmFI GGGAC 1 cut(s) 750
Bso31I GGTCTC 1 cut(s) 176
Bsp1286I GDGCHC 1 cut(s) 353
Bsp13I TCCGGA 1 cut(s) 590
Bsp143I GATC 4 cut(s) 250, 305, 640, 745
BspACI CCGC 2 cut(s) 43, 74
BspDI ATCGAT 1 cut(s) 230
BspEI TCCGGA 1 cut(s) 590
BspHI TCATGA 1 cut(s) 289
BspPI GGATC 2 cut(s) 313, 753
BspTNI GGTCTC 1 cut(s) 176
BsrBI CCGCTC 1 cut(s) 43
BsrI ACTGG 3 cut(s) 468, 487, 971
BssECI CCNNGG 1 cut(s) 36
BssMI GATC 4 cut(s) 250, 305, 640, 745
BssNAI GTATAC 1 cut(s) 267
BssSI CACGAG 1 cut(s) 426
BssT1I CCWWGG 1 cut(s) 36
Bst1107I GTATAC 1 cut(s) 267
Bst2BI CACGAG 1 cut(s) 426
Bst4CI ACNGT 2 cut(s) 85, 264
BstDEI CTNAG 1 cut(s) 756
BstF5I GGATG 4 cut(s) 121, 329, 580, 685
BstKTI GATC 4 cut(s) 253, 308, 643, 748
BstMAI GTCTC 3 cut(s) 176, 416, 768
BstMBI GATC 4 cut(s) 250, 305, 640, 745
BstMWI GCNNNNNNNGC 2 cut(s) 65, 709
BstSFI CTRYAG 2 cut(s) 318, 556
BstV1I GCAGC 4 cut(s) 46, 443, 592, 917
BstV2I GAAGAC 1 cut(s) 819
BstZ17I GTATAC 1 cut(s) 267
Bsu15I ATCGAT 1 cut(s) 230
BsuI GTATCC 1 cut(s) 497
BsuTUI ATCGAT 1 cut(s) 230
BtsCI GGATG 4 cut(s) 121, 329, 580, 685
BtsIMutI CAGTG 4 cut(s) 9, 81, 260, 533
CciI TCATGA 1 cut(s) 289
ClaI ATCGAT 1 cut(s) 230
CseI GACGC 3 cut(s) 23, 520, 878
Csp6I GTAC 3 cut(s) 131, 437, 985
CviAII CATG 3 cut(s) 110, 290, 650
CviQI GTAC 3 cut(s) 131, 437, 985
DdeI CTNAG 1 cut(s) 756
DpnI GATC 4 cut(s) 252, 307, 642, 747
DpnII GATC 4 cut(s) 250, 305, 640, 745
Eco130I CCWWGG 1 cut(s) 36
Eco31I GGTCTC 1 cut(s) 176
Eco32I GATATC 1 cut(s) 214
EcoRV GATATC 1 cut(s) 214
EcoT14I CCWWGG 1 cut(s) 36
EcoT22I ATGCAT 1 cut(s) 733
ErhI CCWWGG 1 cut(s) 36
Esp3I CGTCTC 1 cut(s) 768
FaeI CATG 3 cut(s) 113, 293, 653
FaqI GGGAC 1 cut(s) 750
FatI CATG 3 cut(s) 109, 289, 649
FbaI TGATCA 1 cut(s) 250
FblI GTMKAC 2 cut(s) 121, 266
Fnu4HI GCNGC 4 cut(s) 60, 432, 606, 906
FokI GGATG 4 cut(s) 128, 336, 567, 672
Fsp4HI GCNGC 4 cut(s) 60, 432, 606, 906
FspBI CTAG 3 cut(s) 134, 194, 819
GluI GCNGC 4 cut(s) 60, 432, 606, 906
HapII CCGG 1 cut(s) 591
HgaI GACGC 3 cut(s) 23, 520, 878
Hin1II CATG 3 cut(s) 113, 293, 653
HinfI GANTC 4 cut(s) 386, 424, 454, 662
HpaII CCGG 1 cut(s) 591
HphI GGTGA 3 cut(s) 740, 869, 938
Hpy166II GTNNAC 3 cut(s) 122, 267, 531
Hpy188I TCNGA 2 cut(s) 164, 399
Hpy188III TCNNGA 6 cut(s) 194, 290, 390, 458, 591, 735
Hpy8I GTNNAC 3 cut(s) 122, 267, 531
Hpy99I CGWCG 1 cut(s) 872
HpyCH4III ACNGT 2 cut(s) 85, 264
HpyCH4IV ACGT 1 cut(s) 586
HpyCH4V TGCA 8 cut(s) 62, 68, 81, 431, 502, 608, 731, 905
HpyF10VI GCNNNNNNNGC 2 cut(s) 65, 709
HpyF3I CTNAG 1 cut(s) 756
HpySE526I ACGT 1 cut(s) 586
Hsp92II CATG 3 cut(s) 113, 293, 653
Kpn2I TCCGGA 1 cut(s) 590
Ksp22I TGATCA 1 cut(s) 250
Kzo9I GATC 4 cut(s) 250, 305, 640, 745
LmnI GCTCC 2 cut(s) 22, 40
LpnPI CCDG 9 cut(s) 239, 288, 291, 298, 468, 481, 604, 764, 952
Lsp1109I GCAGC 4 cut(s) 46, 443, 592, 917
LweI GCATC 4 cut(s) 77, 314, 589, 740
MaeI CTAG 3 cut(s) 134, 194, 819
MaeII ACGT 1 cut(s) 586
MaeIII GTNAC 1 cut(s) 936
MalI GATC 4 cut(s) 252, 307, 642, 747
MbiI CCGCTC 1 cut(s) 43
MboI GATC 4 cut(s) 250, 305, 640, 745
MboII GAAGA 2 cut(s) 100, 824
MfeI CAATTG 1 cut(s) 442
MhlI GDGCHC 1 cut(s) 353
MluCI AATT 8 cut(s) 204, 416, 442, 600, 845, 860, 875, 977
MlyI GAGTC 2 cut(s) 418, 463
MmeI TCCRAC 2 cut(s) 298, 824
MnlI CCTC 2 cut(s) 106, 605
Mph1103I ATGCAT 1 cut(s) 733
MroI TCCGGA 1 cut(s) 590
MroXI GAANNNNTTC 1 cut(s) 565
MseI TTAA 1 cut(s) 863
MslI CAYNNNNRTG 2 cut(s) 114, 648
MspA1I CMGCKG 2 cut(s) 74, 434
MspI CCGG 1 cut(s) 591
MunI CAATTG 1 cut(s) 442
MwoI GCNNNNNNNGC 2 cut(s) 65, 709
NdeII GATC 4 cut(s) 250, 305, 640, 745
NlaIII CATG 3 cut(s) 113, 293, 653
NsiI ATGCAT 1 cut(s) 733
PagI TCATGA 1 cut(s) 289
PdmI GAANNNNTTC 1 cut(s) 565
PfeI GAWTC 2 cut(s) 386, 662
PkrI GCNGC 4 cut(s) 61, 433, 607, 907
PleI GAGTC 2 cut(s) 418, 462
PpsI GAGTC 2 cut(s) 418, 462
PvuII CAGCTG 1 cut(s) 434
RsaI GTAC 3 cut(s) 132, 438, 986
RsaNI GTAC 3 cut(s) 131, 437, 985
RseI CAYNNNNRTG 2 cut(s) 114, 648
SaqAI TTAA 1 cut(s) 863
SatI GCNGC 4 cut(s) 60, 432, 606, 906
Sau3AI GATC 4 cut(s) 250, 305, 640, 745
ScaI AGTACT 1 cut(s) 132
SchI GAGTC 2 cut(s) 418, 463
SduI GDGCHC 1 cut(s) 353
SetI ASST 9 cut(s) 169, 193, 280, 300, 436, 557, 568, 589, 910
SfaNI GCATC 4 cut(s) 77, 314, 589, 740
SfcI CTRYAG 2 cut(s) 318, 556
SmiMI CAYNNNNRTG 2 cut(s) 114, 648
Sse9I AATT 8 cut(s) 204, 416, 442, 600, 845, 860, 875, 977
SsiI CCGC 2 cut(s) 43, 74
SspMI CTAG 3 cut(s) 134, 194, 819
StyI CCWWGG 1 cut(s) 36
TaaI ACNGT 2 cut(s) 85, 264
TaiI ACGT 1 cut(s) 589
TaqI TCGA 2 cut(s) 230, 457
TasI AATT 8 cut(s) 204, 416, 442, 600, 845, 860, 875, 977
TatI WGTACW 1 cut(s) 130
TfiI GAWTC 2 cut(s) 386, 662
Tru1I TTAA 1 cut(s) 863
Tru9I TTAA 1 cut(s) 863
TscAI CASTG 4 cut(s) 16, 88, 267, 533
TseI GCWGC 4 cut(s) 59, 431, 605, 905
TspDTI ATGAA 3 cut(s) 477, 620, 909
TspGWI ACGGA 1 cut(s) 479
TspRI CASTG 4 cut(s) 16, 88, 267, 533
XapI RAATTY 3 cut(s) 845, 875, 977
XbaI TCTAGA 1 cut(s) 193
XmiI GTMKAC 2 cut(s) 121, 266
XmnI GAANNNNTTC 1 cut(s) 565
XspI CTAG 3 cut(s) 134, 194, 819
ZrmI AGTACT 1 cut(s) 132
Zsp2I ATGCAT 1 cut(s) 733
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.