Rh6AG283600

serine-threonine kinase receptor-associated

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
OG0019030
Physical Location & Seq
Forward (+)
47920999 .. 47922894
1896 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG283600.1

Sequence Viewer

Length: 573 bp
ATGAAAAAGCATGATGCGGTTGCTGGATCAGTCAGGGCTGTAGGATGCCTATCCCCTCATACTTTTGTGAGCACATACAATAATATGACTGGTGTTAGATTTTGGGATTCAAGATGTCTGAGTTTTTTGGCTCACAAATTGGAGACTCGTGTAGCTGTACCCAATTGTGAAGTGAGTCGAGATGAAGCCAGTATTACTTCTGCTGGTGTGCAAGTTTTGACGCTTGATAATAATCAGTGGACTACGCAACATTATCTAATAAGCTGTAGAACAGCTTCCCTACACAAGCATCCATGTTCCGGAAATATAATTGCTGCAGGAGGAGATGATGGTTATGTTCATTTATTCGATCATAATCATGTTGAGATTGATTCCAATAATGTTGCTGAAAGTCATCCTATTCAATGTGTGCGATTTTCGCTAACAGAGAGATATTATGCATCAGGACATAAGGATCACCAGCCTAAGATGACAAGAGTGCGAGACATTTGGAGAATAGGATCATCCCGAGATGTTCTCACACAATCTTATTCACCAGAATCTTATTCACCAGAAAATCCATTGTCTGCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03013 map03013
Pfam Domains
Protein Families
WD40

Protein Analysis

190

Amino Acids

21.21

Weight (kDa)

6.85

Isoelectric Point (pI)

44.15

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Beta-prop_THOC3 PF25174 100 - 160 6.7e-06 THOC3 beta-propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0019030)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr6g0285211
rosa_laevigata RLG00000012661
rosa_multiflora Rmu_sc0005710.1_g000002 Rmu_sc0006801.1_g000008 Rmu_sc0006801.1_g000009
rosa_roxburghii Rroxscaffold_7G00183410
rosa_samantha Rh6AG283500 Rh6AG283600 Rh6CG286100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 299
AciI CCGC 1 cut(s) 17
AclWI GGATC 3 cut(s) 34, 462, 508
AfaI GTAC 1 cut(s) 159
AfiI CCNNNNNNNGG 1 cut(s) 299
AgsI TTSAA 2 cut(s) 111, 404
AluBI AGCT 3 cut(s) 155, 264, 275
AluI AGCT 3 cut(s) 155, 264, 275
Alw21I GWGCWC 1 cut(s) 74
Alw26I GTCTC 2 cut(s) 137, 477
AlwI GGATC 3 cut(s) 34, 462, 508
Ama87I CYCGRG 1 cut(s) 507
Aor13HI TCCGGA 1 cut(s) 299
ApeKI GCWGC 1 cut(s) 314
Asp700I GAANNNNTTC 1 cut(s) 274
AsuHPI GGTGA 3 cut(s) 449, 525, 540
AvaI CYCGRG 1 cut(s) 507
BarI GAAGNNNNNNTAC 2 cut(s) 259, 291
BauI CACGAG 1 cut(s) 147
Bbv12I GWGCWC 1 cut(s) 74
BbvI GCAGC 1 cut(s) 301
BccI CCATC 1 cut(s) 323
BcoDI GTCTC 2 cut(s) 137, 477
BfmI CTRYAG 3 cut(s) 39, 265, 315
BisI GCNGC 1 cut(s) 315
BlsI GCNGC 1 cut(s) 316
BmeT110I CYCGRG 1 cut(s) 507
BmsI GCATC 4 cut(s) 4, 35, 298, 449
BplI GAGNNNNNCTC 2 cut(s) 501, 533
BsaBI GATNNNNATC 3 cut(s) 49, 231, 354
BsaWI WCCGGW 1 cut(s) 299
Bsc4I CCNNNNNNNGG 1 cut(s) 299
Bse1I ACTGG 2 cut(s) 94, 189
Bse8I GATNNNNATC 3 cut(s) 49, 231, 354
BseAI TCCGGA 1 cut(s) 299
BseGI GGATG 4 cut(s) 50, 289, 394, 503
BseJI GATNNNNATC 3 cut(s) 49, 231, 354
BseLI CCNNNNNNNGG 1 cut(s) 299
BseMII CTCAG 1 cut(s) 110
BseNI ACTGG 2 cut(s) 94, 189
BseRI GAGGAG 1 cut(s) 336
BseXI GCAGC 1 cut(s) 301
BsiHKAI GWGCWC 1 cut(s) 74
BsiHKCI CYCGRG 1 cut(s) 507
BsiSI CCGG 1 cut(s) 300
BslI CCNNNNNNNGG 1 cut(s) 299
BsmAI GTCTC 2 cut(s) 137, 477
BsoBI CYCGRG 1 cut(s) 507
Bsp1286I GDGCHC 1 cut(s) 74
Bsp13I TCCGGA 1 cut(s) 299
Bsp143I GATC 4 cut(s) 26, 349, 454, 500
BspACI CCGC 1 cut(s) 17
BspCNI CTCAG 1 cut(s) 111
BspEI TCCGGA 1 cut(s) 299
BspMAI CTGCAG 1 cut(s) 319
BspPI GGATC 3 cut(s) 34, 462, 508
BsrI ACTGG 2 cut(s) 94, 189
BssMI GATC 4 cut(s) 26, 349, 454, 500
BssSI CACGAG 1 cut(s) 147
Bst2BI CACGAG 1 cut(s) 147
BstDEI CTNAG 2 cut(s) 119, 465
BstF5I GGATG 4 cut(s) 50, 289, 394, 503
BstKTI GATC 4 cut(s) 29, 352, 457, 503
BstMAI GTCTC 2 cut(s) 137, 477
BstMBI GATC 4 cut(s) 26, 349, 454, 500
BstMWI GCNNNNNNNGC 1 cut(s) 418
BstSFI CTRYAG 3 cut(s) 39, 265, 315
BstV1I GCAGC 1 cut(s) 301
BtsCI GGATG 4 cut(s) 50, 289, 394, 503
BtsIMutI CAGTG 1 cut(s) 242
CseI GACGC 1 cut(s) 229
Csp6I GTAC 1 cut(s) 158
CviAII CATG 3 cut(s) 11, 294, 359
CviJI RGCY 7 cut(s) 38, 131, 155, 188, 264, 275, 463
CviKI_1 RGCY 7 cut(s) 38, 131, 155, 188, 264, 275, 463
CviQI GTAC 1 cut(s) 158
DdeI CTNAG 2 cut(s) 119, 465
DpnI GATC 4 cut(s) 28, 351, 456, 502
DpnII GATC 4 cut(s) 26, 349, 454, 500
Eco88I CYCGRG 1 cut(s) 507
EcoT22I ATGCAT 1 cut(s) 442
FaeI CATG 3 cut(s) 14, 297, 362
FatI CATG 3 cut(s) 10, 293, 358
Fnu4HI GCNGC 1 cut(s) 315
FokI GGATG 4 cut(s) 57, 276, 381, 490
Fsp4HI GCNGC 1 cut(s) 315
GluI GCNGC 1 cut(s) 315
HapII CCGG 1 cut(s) 300
HgaI GACGC 1 cut(s) 229
Hin1II CATG 3 cut(s) 14, 297, 362
HinfI GANTC 5 cut(s) 107, 145, 175, 371, 539
HpaII CCGG 1 cut(s) 300
HphI GGTGA 3 cut(s) 449, 525, 540
Hpy166II GTNNAC 1 cut(s) 240
Hpy188I TCNGA 1 cut(s) 120
Hpy188III TCNNGA 5 cut(s) 111, 179, 300, 444, 507
Hpy8I GTNNAC 1 cut(s) 240
HpyCH4V TGCA 4 cut(s) 211, 317, 440, 569
HpyF10VI GCNNNNNNNGC 1 cut(s) 418
HpyF3I CTNAG 2 cut(s) 119, 465
Hsp92II CATG 3 cut(s) 14, 297, 362
Kpn2I TCCGGA 1 cut(s) 299
Kzo9I GATC 4 cut(s) 26, 349, 454, 500
Lsp1109I GCAGC 1 cut(s) 301
LweI GCATC 4 cut(s) 4, 35, 298, 449
MalI GATC 4 cut(s) 28, 351, 456, 502
MboI GATC 4 cut(s) 26, 349, 454, 500
MfeI CAATTG 1 cut(s) 163
MhlI GDGCHC 1 cut(s) 74
MluCI AATT 3 cut(s) 137, 163, 309
MlyI GAGTC 2 cut(s) 139, 184
MnlI CCTC 2 cut(s) 66, 314
Mph1103I ATGCAT 1 cut(s) 442
MroI TCCGGA 1 cut(s) 299
MroXI GAANNNNTTC 1 cut(s) 274
MslI CAYNNNNRTG 1 cut(s) 357
MspI CCGG 1 cut(s) 300
MunI CAATTG 1 cut(s) 163
MwoI GCNNNNNNNGC 1 cut(s) 418
NdeII GATC 4 cut(s) 26, 349, 454, 500
NlaIII CATG 3 cut(s) 14, 297, 362
NsiI ATGCAT 1 cut(s) 442
PdmI GAANNNNTTC 1 cut(s) 274
PfeI GAWTC 3 cut(s) 107, 371, 539
PkrI GCNGC 1 cut(s) 316
PleI GAGTC 2 cut(s) 139, 183
PpsI GAGTC 2 cut(s) 139, 183
PstI CTGCAG 1 cut(s) 319
RsaI GTAC 1 cut(s) 159
RsaNI GTAC 1 cut(s) 158
RseI CAYNNNNRTG 1 cut(s) 357
SatI GCNGC 1 cut(s) 315
Sau3AI GATC 4 cut(s) 26, 349, 454, 500
SchI GAGTC 2 cut(s) 139, 184
SduI GDGCHC 1 cut(s) 74
SetI ASST 3 cut(s) 157, 266, 277
SfaNI GCATC 4 cut(s) 4, 35, 298, 449
SfcI CTRYAG 3 cut(s) 39, 265, 315
SmiMI CAYNNNNRTG 1 cut(s) 357
Sse9I AATT 3 cut(s) 137, 163, 309
SsiI CCGC 1 cut(s) 17
TaqI TCGA 2 cut(s) 178, 348
TasI AATT 3 cut(s) 137, 163, 309
TfiI GAWTC 3 cut(s) 107, 371, 539
TscAI CASTG 1 cut(s) 242
TseI GCWGC 1 cut(s) 314
TspDTI ATGAA 3 cut(s) 17, 198, 329
TspRI CASTG 1 cut(s) 242
XmnI GAANNNNTTC 1 cut(s) 274
Zsp2I ATGCAT 1 cut(s) 442
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.