Contains the following InterPro domains WD40 repeat 2 (InterPro IPR019782), WD40 repeat-like-containing domain (InterPro IPR011046), WD40 repeat, conserved site (InterPro IPR019775), WD40-repeat-containing domain (InterPro IPR017986), WD40 YVTN repeat-like-containing domain (InterPro IPR015943), WD40 repeat (InterPro IPR001680), WD40 repeat, subgroup (InterPro IPR019781)
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| rosa_chinensis | RchiOBHm_Chr6g0285211 |
| rosa_laevigata | RLG00000012661 |
| rosa_multiflora | Rmu_sc0005710.1_g000002 Rmu_sc0006801.1_g000008 Rmu_sc0006801.1_g000009 |
| rosa_roxburghii | Rroxscaffold_7G00183410 |
| rosa_samantha | Rh6AG283500 Rh6AG283600 Rh6CG286100 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccBSI | CCGCTC | 1 cut(s) | 295 |
| AccI | GTMKAC | 1 cut(s) | 373 |
| AciI | CCGC | 2 cut(s) | 101, 295 |
| AclWI | GGATC | 1 cut(s) | 92 |
| AcsI | RAATTY | 1 cut(s) | 342 |
| AfaI | GTAC | 2 cut(s) | 24, 384 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 294, 444 |
| AgsI | TTSAA | 5 cut(s) | 47, 63, 93, 225, 247 |
| AluBI | AGCT | 7 cut(s) | 14, 29, 35, 154, 215, 419, 443 |
| AluI | AGCT | 7 cut(s) | 14, 29, 35, 154, 215, 419, 443 |
| Alw26I | GTCTC | 1 cut(s) | 428 |
| AlwI | GGATC | 1 cut(s) | 92 |
| ApeKI | GCWGC | 1 cut(s) | 311 |
| ApoI | RAATTY | 1 cut(s) | 342 |
| AsuHPI | GGTGA | 1 cut(s) | 119 |
| AsuNHI | GCTAGC | 1 cut(s) | 154 |
| BbvI | GCAGC | 1 cut(s) | 298 |
| BccI | CCATC | 3 cut(s) | 227, 251, 362 |
| BceAI | ACGGC | 1 cut(s) | 143 |
| BcoDI | GTCTC | 1 cut(s) | 428 |
| BfaI | CTAG | 2 cut(s) | 155, 386 |
| BisI | GCNGC | 1 cut(s) | 312 |
| BlsI | GCNGC | 1 cut(s) | 313 |
| BmcAI | AGTACT | 1 cut(s) | 384 |
| BmsI | GCATC | 2 cut(s) | 65, 329 |
| BmtI | GCTAGC | 1 cut(s) | 158 |
| BsaI | GGTCTC | 1 cut(s) | 428 |
| BsaJI | CCNNGG | 2 cut(s) | 174, 288 |
| BsaWI | WCCGGW | 1 cut(s) | 271 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 294, 444 |
| BseDI | CCNNGG | 2 cut(s) | 174, 288 |
| BseGI | GGATG | 1 cut(s) | 373 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 294, 444 |
| BseXI | GCAGC | 1 cut(s) | 298 |
| BsiSI | CCGG | 1 cut(s) | 272 |
| BsiWI | CGTACG | 1 cut(s) | 22 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 294, 444 |
| BsmAI | GTCTC | 1 cut(s) | 428 |
| Bso31I | GGTCTC | 1 cut(s) | 428 |
| Bsp143I | GATC | 1 cut(s) | 97 |
| BspACI | CCGC | 2 cut(s) | 101, 295 |
| BspOI | GCTAGC | 1 cut(s) | 158 |
| BspPI | GGATC | 1 cut(s) | 92 |
| BspTNI | GGTCTC | 1 cut(s) | 428 |
| BsrBI | CCGCTC | 1 cut(s) | 295 |
| BssECI | CCNNGG | 2 cut(s) | 174, 288 |
| BssMI | GATC | 1 cut(s) | 97 |
| BssT1I | CCWWGG | 1 cut(s) | 288 |
| Bst4CI | ACNGT | 2 cut(s) | 22, 67 |
| BstC8I | GCNNGC | 2 cut(s) | 156, 199 |
| BstDEI | CTNAG | 2 cut(s) | 86, 191 |
| BstF5I | GGATG | 1 cut(s) | 373 |
| BstKTI | GATC | 1 cut(s) | 100 |
| BstMAI | GTCTC | 1 cut(s) | 428 |
| BstMBI | GATC | 1 cut(s) | 97 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 131, 207, 317 |
| BstV1I | GCAGC | 1 cut(s) | 298 |
| BtsCI | GGATG | 1 cut(s) | 373 |
| Cac8I | GCNNGC | 2 cut(s) | 156, 199 |
| CseI | GACGC | 1 cut(s) | 275 |
| Csp6I | GTAC | 2 cut(s) | 23, 383 |
| CviAII | CATG | 2 cut(s) | 263, 362 |
| CviJI | RGCY | 9 cut(s) | 14, 29, 35, 154, 158, 179, 215, 419, 443 |
| CviKI_1 | RGCY | 9 cut(s) | 14, 29, 35, 154, 158, 179, 215, 419, 443 |
| CviQI | GTAC | 2 cut(s) | 23, 383 |
| DdeI | CTNAG | 2 cut(s) | 86, 191 |
| DpnI | GATC | 1 cut(s) | 99 |
| DpnII | GATC | 1 cut(s) | 97 |
| Eco130I | CCWWGG | 1 cut(s) | 288 |
| Eco31I | GGTCTC | 1 cut(s) | 428 |
| EcoT14I | CCWWGG | 1 cut(s) | 288 |
| ErhI | CCWWGG | 1 cut(s) | 288 |
| FaeI | CATG | 2 cut(s) | 266, 365 |
| FaiI | YATR | 7 cut(s) | 116, 128, 218, 255, 264, 309, 363 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 24, 56 |
| FatI | CATG | 2 cut(s) | 262, 361 |
| FblI | GTMKAC | 1 cut(s) | 373 |
| Fnu4HI | GCNGC | 1 cut(s) | 312 |
| FokI | GGATG | 1 cut(s) | 380 |
| Fsp4HI | GCNGC | 1 cut(s) | 312 |
| FspBI | CTAG | 2 cut(s) | 155, 386 |
| GluI | GCNGC | 1 cut(s) | 312 |
| HapII | CCGG | 1 cut(s) | 272 |
| HgaI | GACGC | 1 cut(s) | 275 |
| Hin1II | CATG | 2 cut(s) | 266, 365 |
| HindIII | AAGCTT | 1 cut(s) | 12 |
| HinfI | GANTC | 1 cut(s) | 76 |
| HpaII | CCGG | 1 cut(s) | 272 |
| HphI | GGTGA | 1 cut(s) | 119 |
| Hpy166II | GTNNAC | 1 cut(s) | 374 |
| Hpy188I | TCNGA | 2 cut(s) | 416, 447 |
| Hpy8I | GTNNAC | 1 cut(s) | 374 |
| HpyCH4III | ACNGT | 2 cut(s) | 22, 67 |
| HpyCH4V | TGCA | 6 cut(s) | 134, 147, 197, 314, 320, 408 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 131, 207, 317 |
| HpyF3I | CTNAG | 2 cut(s) | 86, 191 |
| Hsp92II | CATG | 2 cut(s) | 266, 365 |
| Kzo9I | GATC | 1 cut(s) | 97 |
| LmnI | GCTCC | 2 cut(s) | 274, 292 |
| LpnPI | CCDG | 1 cut(s) | 285 |
| Lsp1109I | GCAGC | 1 cut(s) | 298 |
| LweI | GCATC | 2 cut(s) | 65, 329 |
| MaeI | CTAG | 2 cut(s) | 155, 386 |
| MalI | GATC | 1 cut(s) | 99 |
| MbiI | CCGCTC | 1 cut(s) | 295 |
| MboI | GATC | 1 cut(s) | 97 |
| MboII | GAAGA | 1 cut(s) | 51 |
| MfeI | CAATTG | 2 cut(s) | 135, 315 |
| MluCI | AATT | 5 cut(s) | 135, 219, 315, 328, 342 |
| MlyI | GAGTC | 1 cut(s) | 70 |
| MnlI | CCTC | 3 cut(s) | 103, 169, 358 |
| MseI | TTAA | 1 cut(s) | 69 |
| MslI | CAYNNNNRTG | 1 cut(s) | 366 |
| MspI | CCGG | 1 cut(s) | 272 |
| MunI | CAATTG | 2 cut(s) | 135, 315 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 131, 207, 317 |
| NdeII | GATC | 1 cut(s) | 97 |
| NheI | GCTAGC | 1 cut(s) | 154 |
| NlaIII | CATG | 2 cut(s) | 266, 365 |
| NmeAIII | GCCGAG | 2 cut(s) | 32, 199 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 171 |
| Pfl23II | CGTACG | 1 cut(s) | 22 |
| PkrI | GCNGC | 1 cut(s) | 313 |
| PleI | GAGTC | 1 cut(s) | 70 |
| PpsI | GAGTC | 1 cut(s) | 70 |
| PspLI | CGTACG | 1 cut(s) | 22 |
| RsaI | GTAC | 2 cut(s) | 24, 384 |
| RsaNI | GTAC | 2 cut(s) | 23, 383 |
| RseI | CAYNNNNRTG | 1 cut(s) | 366 |
| SaqAI | TTAA | 1 cut(s) | 69 |
| SatI | GCNGC | 1 cut(s) | 312 |
| Sau3AI | GATC | 1 cut(s) | 97 |
| ScaI | AGTACT | 1 cut(s) | 384 |
| SchI | GAGTC | 1 cut(s) | 70 |
| SetI | ASST | 9 cut(s) | 16, 31, 37, 109, 156, 185, 217, 421, 445 |
| SfaNI | GCATC | 2 cut(s) | 65, 329 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 366 |
| Sse9I | AATT | 5 cut(s) | 135, 219, 315, 328, 342 |
| SsiI | CCGC | 2 cut(s) | 101, 295 |
| SspMI | CTAG | 2 cut(s) | 155, 386 |
| StyI | CCWWGG | 1 cut(s) | 288 |
| TaaI | ACNGT | 2 cut(s) | 22, 67 |
| TaqI | TCGA | 1 cut(s) | 165 |
| TasI | AATT | 5 cut(s) | 135, 219, 315, 328, 342 |
| TatI | WGTACW | 1 cut(s) | 382 |
| Tru1I | TTAA | 1 cut(s) | 69 |
| Tru9I | TTAA | 1 cut(s) | 69 |
| TseI | GCWGC | 1 cut(s) | 311 |
| XapI | RAATTY | 1 cut(s) | 342 |
| XmiI | GTMKAC | 1 cut(s) | 373 |
| XspI | CTAG | 2 cut(s) | 155, 386 |
| ZrmI | AGTACT | 1 cut(s) | 384 |