Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0019030

Physical Location & Seq

Genomic Coordinates Reverse (-)

21022529 .. 21023446

Gene Structure 918 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000012661

Sequence Viewer

CDS Protein Promoter (2k)

Length: 822 bp

ATGGCTGGTCTTGATGCTTCAGTCGTGGATCTTTCCTATAGTTCAGTTATTGTTGAGGGTACCTTCGTCCTTAACGCAAGTAAAGAAAACACAGCTATGCTTTCGAGGGAAGATGAAACTCACTTGAAGCAATATGATGGACATGATGCTCCAGTATGGAGTTGTTCCTTGGAGCGGAATGTTATGTATGCTGCAACTGCATCAGCGGATTGCACTGTGAAGATTTCGCGTGGAATAGAACATGAGGATGGTGTACCAAAAGTACTAGAAACACATCAAAACCCTTACATTGTCCGAGCTTGTGCGTTTTGGGAGACCACAGCTCTGGATTTACTAATTGGAGATATCAATGGATACATATCGCATGATGAGGTTATTGGATCAGTCAGGGCTGTAAGATGCCTATCCCCTCATACTTTTGATTCAATATGTCTGACTTTTTTAGCTCACATATTGGAGACTCGTGCAGCTGTGCCCAATTGTGAAGTGAGTCGAGATGGAACCAGTATTACTCTTGCTGGTATCCATGTAGGTGTGCAACTTTTGACGCTTGATAATAATCAGTGGACTACTCAACATTATCCGATAAGCTGTATAACAGCTTCCCTATACAAGCATCCACGTTCTGGAAATATAATTGTTGCAGGAGGAGATGATGGTTATGTTCGTTTATATGGTCATAATCATGTTGAGATTGATTCCAATAATGTTGCTGAAGGTCATCCTTTTCAATGTATGCGATTTTCACCAACTGAGAGATATTATGCATCGGGACATAAGAATCACCAACCTAAGATGACGAGAGTGCAAGACGGTTCGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0008150 GO:0009966 GO:0009968 GO:0010646 GO:0010648 GO:0017015 GO:0023051 GO:0023057 GO:0030512 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0050789 GO:0050794 GO:0065007 GO:0090092 GO:0090101 GO:0090287 GO:0090288 GO:1903844 GO:1903845

KEGG Pathways

Metabolic & Signaling

ko03013 map03013

Pfam Domains

Protein Families

WD40

Protein Analysis

274

Amino Acids

30.06

Weight (kDa)

5.6

Isoelectric Point (pI)

42.83

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0019030)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr6g0285211
rosa_laevigata	RLG00000012661
rosa_multiflora	Rmu_sc0005710.1_g000002 Rmu_sc0006801.1_g000008 Rmu_sc0006801.1_g000009
rosa_roxburghii	Rroxscaffold_7G00183410
rosa_samantha	Rh6AG283500 Rh6AG283600 Rh6CG286100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	59
AccB1I	GGYRCC	1 cut(s)	59
AccB7I	CCANNNNNTGG	1 cut(s)	626
AccBSI	CCGCTC	1 cut(s)	175
AccII	CGCG	1 cut(s)	229
AciI	CCGC	2 cut(s)	175, 206
AclWI	GGATC	2 cut(s)	36, 388
AcuI	CTGAAG	1 cut(s)	735
AfaI	GTAC	3 cut(s)	61, 255, 264
AfiI	CCNNNNNNNGG	2 cut(s)	174, 626
AgsI	TTSAA	3 cut(s)	127, 426, 731
AluBI	AGCT	7 cut(s)	95, 299, 323, 446, 470, 591, 602
AluI	AGCT	7 cut(s)	95, 299, 323, 446, 470, 591, 602
Alw26I	GTCTC	2 cut(s)	308, 452
AlwI	GGATC	2 cut(s)	36, 388
ApeKI	GCWGC	2 cut(s)	191, 467
Asp718I	GGTACC	1 cut(s)	59
AsuHPI	GGTGA	2 cut(s)	738, 776
BaeGI	GKGCMC	1 cut(s)	477
BaeI	ACNNNNGTAYC	2 cut(s)	51, 84
BanI	GGYRCC	1 cut(s)	59
BarI	GAAGNNNNNNTAC	2 cut(s)	586, 618
BauI	CACGAG	1 cut(s)	462
BbvI	GCAGC	2 cut(s)	178, 479
BccI	CCATC	4 cut(s)	131, 242, 491, 650
BciVI	GTATCC	2 cut(s)	347, 533
BcoDI	GTCTC	2 cut(s)	308, 452
BfaI	CTAG	1 cut(s)	266
BfmI	CTRYAG	1 cut(s)	37
BfuI	GTATCC	2 cut(s)	347, 533
BisI	GCNGC	2 cut(s)	192, 468
BlsI	GCNGC	2 cut(s)	193, 469
BmcAI	AGTACT	1 cut(s)	264
BmiI	GGNNCC	2 cut(s)	61, 502
BmsI	GCATC	6 cut(s)	4, 136, 209, 389, 625, 776
BpmI	CTGGAG	1 cut(s)	135
BsaBI	GATNNNNATC	3 cut(s)	358, 403, 558
BsaI	GGTCTC	1 cut(s)	308
BsaJI	CCNNGG	1 cut(s)	168
Bsc4I	CCNNNNNNNGG	2 cut(s)	174, 626
Bse1I	ACTGG	2 cut(s)	152, 504
Bse8I	GATNNNNATC	3 cut(s)	358, 403, 558
BseDI	CCNNGG	1 cut(s)	168
BseGI	GGATG	3 cut(s)	253, 616, 721
BseJI	GATNNNNATC	3 cut(s)	358, 403, 558
BseLI	CCNNNNNNNGG	2 cut(s)	174, 626
BseMII	CTCAG	1 cut(s)	744
BseNI	ACTGG	2 cut(s)	152, 504
BseRI	GAGGAG	1 cut(s)	663
BseSI	GKGCMC	1 cut(s)	477
BseXI	GCAGC	2 cut(s)	178, 479
BsgI	GTGCAG	1 cut(s)	486
Bsh1236I	CGCG	1 cut(s)	229
BshNI	GGYRCC	1 cut(s)	59
BslFI	GGGAC	1 cut(s)	786
BslI	CCNNNNNNNGG	2 cut(s)	174, 626
BsmAI	GTCTC	2 cut(s)	308, 452
BsmFI	GGGAC	1 cut(s)	786
Bso31I	GGTCTC	1 cut(s)	308
Bsp1286I	GDGCHC	1 cut(s)	477
Bsp143I	GATC	2 cut(s)	28, 380
BspACI	CCGC	2 cut(s)	175, 206
BspCNI	CTCAG	1 cut(s)	745
BspFNI	CGCG	1 cut(s)	229
BspLI	GGNNCC	2 cut(s)	61, 502
BspPI	GGATC	2 cut(s)	36, 388
BspT107I	GGYRCC	1 cut(s)	59
BspTNI	GGTCTC	1 cut(s)	308
BsrBI	CCGCTC	1 cut(s)	175
BsrI	ACTGG	2 cut(s)	152, 504
BssECI	CCNNGG	1 cut(s)	168
BssMI	GATC	2 cut(s)	28, 380
BssSI	CACGAG	1 cut(s)	462
BssT1I	CCWWGG	1 cut(s)	168
Bst2BI	CACGAG	1 cut(s)	462
Bst4CI	ACNGT	2 cut(s)	217, 815
BstDEI	CTNAG	2 cut(s)	753, 792
BstF5I	GGATG	3 cut(s)	253, 616, 721
BstFNI	CGCG	1 cut(s)	229
BstKTI	GATC	2 cut(s)	31, 383
BstMAI	GTCTC	2 cut(s)	308, 452
BstMBI	GATC	2 cut(s)	28, 380
BstMWI	GCNNNNNNNGC	1 cut(s)	197
BstSFI	CTRYAG	1 cut(s)	37
BstSLI	GKGCMC	1 cut(s)	477
BstUI	CGCG	1 cut(s)	229
BstV1I	GCAGC	2 cut(s)	178, 479
BstX2I	RGATCY	1 cut(s)	28
BstXI	CCANNNNNNTGG	1 cut(s)	325
BstYI	RGATCY	1 cut(s)	28
BsuI	GTATCC	2 cut(s)	347, 533
BtsCI	GGATG	3 cut(s)	253, 616, 721
BtsIMutI	CAGTG	2 cut(s)	213, 569
CseI	GACGC	1 cut(s)	556
Csp6I	GTAC	3 cut(s)	60, 254, 263
CviAII	CATG	5 cut(s)	143, 242, 365, 527, 686
CviJI	RGCY	9 cut(s)	5, 95, 299, 323, 392, 446, 470, 591, 602
CviKI_1	RGCY	9 cut(s)	5, 95, 299, 323, 392, 446, 470, 591, 602
CviQI	GTAC	3 cut(s)	60, 254, 263
DdeI	CTNAG	2 cut(s)	753, 792
DpnI	GATC	2 cut(s)	30, 382
DpnII	GATC	2 cut(s)	28, 380
Eco130I	CCWWGG	1 cut(s)	168
Eco31I	GGTCTC	1 cut(s)	308
Eco32I	GATATC	1 cut(s)	346
Eco57I	CTGAAG	1 cut(s)	735
EcoRV	GATATC	1 cut(s)	346
EcoT14I	CCWWGG	1 cut(s)	168
EcoT22I	ATGCAT	1 cut(s)	769
ErhI	CCWWGG	1 cut(s)	168
FaeI	CATG	5 cut(s)	146, 245, 368, 530, 689
FaqI	GGGAC	1 cut(s)	786
FatI	CATG	5 cut(s)	142, 241, 364, 526, 685
Fnu4HI	GCNGC	2 cut(s)	192, 468
FokI	GGATG	3 cut(s)	260, 603, 708
Fsp4HI	GCNGC	2 cut(s)	192, 468
FspBI	CTAG	1 cut(s)	266
GluI	GCNGC	2 cut(s)	192, 468
GsuI	CTGGAG	1 cut(s)	135
HgaI	GACGC	1 cut(s)	556
Hin1II	CATG	5 cut(s)	146, 245, 368, 530, 689
HinfI	GANTC	5 cut(s)	422, 460, 490, 698, 781
HphI	GGTGA	2 cut(s)	738, 776
Hpy166II	GTNNAC	2 cut(s)	254, 567
Hpy188I	TCNGA	3 cut(s)	296, 435, 585
Hpy188III	TCNNGA	5 cut(s)	11, 326, 494, 627, 771
Hpy8I	GTNNAC	2 cut(s)	254, 567
HpyAV	CCTTC	2 cut(s)	73, 710
HpyCH4III	ACNGT	2 cut(s)	217, 815
HpyCH4IV	ACGT	1 cut(s)	622
HpyCH4V	TGCA	8 cut(s)	194, 200, 213, 467, 538, 644, 767, 808
HpyF10VI	GCNNNNNNNGC	1 cut(s)	197
HpyF3I	CTNAG	2 cut(s)	753, 792
HpySE526I	ACGT	1 cut(s)	622
Hsp92II	CATG	5 cut(s)	146, 245, 368, 530, 689
KpnI	GGTACC	1 cut(s)	63
Kzo9I	GATC	2 cut(s)	28, 380
LmnI	GCTCC	2 cut(s)	154, 172
LpnPI	CCDG	7 cut(s)	165, 311, 373, 504, 517, 612, 630
Lsp1109I	GCAGC	2 cut(s)	178, 479
LweI	GCATC	6 cut(s)	4, 136, 209, 389, 625, 776
MaeI	CTAG	1 cut(s)	266
MaeII	ACGT	1 cut(s)	622
MalI	GATC	2 cut(s)	30, 382
MbiI	CCGCTC	1 cut(s)	175
MboI	GATC	2 cut(s)	28, 380
MboII	GAAGA	2 cut(s)	122, 232
MfeI	CAATTG	1 cut(s)	478
MflI	RGATCY	1 cut(s)	28
MhlI	GDGCHC	1 cut(s)	477
MluCI	AATT	3 cut(s)	336, 478, 636
MlyI	GAGTC	2 cut(s)	454, 499
MnlI	CCTC	6 cut(s)	49, 99, 238, 364, 420, 641
Mph1103I	ATGCAT	1 cut(s)	769
MseI	TTAA	1 cut(s)	72
MslI	CAYNNNNRTG	4 cut(s)	95, 246, 531, 684
MspA1I	CMGCKG	2 cut(s)	206, 470
MunI	CAATTG	1 cut(s)	478
MvnI	CGCG	1 cut(s)	229
MwoI	GCNNNNNNNGC	1 cut(s)	197
NdeII	GATC	2 cut(s)	28, 380
NlaIII	CATG	5 cut(s)	146, 245, 368, 530, 689
NlaIV	GGNNCC	2 cut(s)	61, 502
NsiI	ATGCAT	1 cut(s)	769
PfeI	GAWTC	3 cut(s)	422, 698, 781
PflMI	CCANNNNNTGG	1 cut(s)	626
PkrI	GCNGC	2 cut(s)	193, 469
PleI	GAGTC	2 cut(s)	454, 498
PpsI	GAGTC	2 cut(s)	454, 498
PspN4I	GGNNCC	2 cut(s)	61, 502
PsrI	GAACNNNNNNTAC	2 cut(s)	493, 525
PsuI	RGATCY	1 cut(s)	28
PvuII	CAGCTG	1 cut(s)	470
RsaI	GTAC	3 cut(s)	61, 255, 264
RsaNI	GTAC	3 cut(s)	60, 254, 263
RseI	CAYNNNNRTG	4 cut(s)	95, 246, 531, 684
SaqAI	TTAA	1 cut(s)	72
SatI	GCNGC	2 cut(s)	192, 468
Sau3AI	GATC	2 cut(s)	28, 380
ScaI	AGTACT	1 cut(s)	264
SchI	GAGTC	2 cut(s)	454, 499
SduI	GDGCHC	1 cut(s)	477
SfaNI	GCATC	6 cut(s)	4, 136, 209, 389, 625, 776
SfcI	CTRYAG	1 cut(s)	37
SmiMI	CAYNNNNRTG	4 cut(s)	95, 246, 531, 684
Sse9I	AATT	3 cut(s)	336, 478, 636
SsiI	CCGC	2 cut(s)	175, 206
SspMI	CTAG	1 cut(s)	266
StyI	CCWWGG	1 cut(s)	168
TaaI	ACNGT	2 cut(s)	217, 815
TaiI	ACGT	1 cut(s)	625
TaqI	TCGA	2 cut(s)	104, 493
TasI	AATT	3 cut(s)	336, 478, 636
TatI	WGTACW	1 cut(s)	262
TfiI	GAWTC	3 cut(s)	422, 698, 781
Tru1I	TTAA	1 cut(s)	72
Tru9I	TTAA	1 cut(s)	72
TscAI	CASTG	2 cut(s)	220, 569
TseI	GCWGC	2 cut(s)	191, 467
TspDTI	ATGAA	1 cut(s)	129
TspRI	CASTG	2 cut(s)	220, 569
Van91I	CCANNNNNTGG	1 cut(s)	626
XspI	CTAG	1 cut(s)	266
ZrmI	AGTACT	1 cut(s)	264
Zsp2I	ATGCAT	1 cut(s)	769

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.