Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006801.1

Orthogroup ID

OG0019030

Physical Location & Seq

Genomic Coordinates Forward (+)

45178 .. 45604

Gene Structure 427 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0006801.1_g000008.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 348 bp

atgagtaggaagagaatcaccatcgaagggcatctggtttctcatcaattgcaccctttcgtggatctttcctatagttcagttactgttgagggtaccttcgtccttagtgcaagtaaagacagtacagctatgctttcgagggaagatggaactcacttgaagaaatattctggacatgacgctccagtatggagttgttccttggagcggaatgctgtgtatgctgcaactgcatcagcggattgcactgtgaagatttggcgtggaatagaacatgaggatggtctaccgaaagtactagaaacacatcaaaacccttgcattgtccgagcttgtgctttttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0008150 GO:0009966 GO:0009968 GO:0010646 GO:0010648 GO:0017015 GO:0023051 GO:0023057 GO:0030512 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0050789 GO:0050794 GO:0065007 GO:0090092 GO:0090101 GO:0090287 GO:0090288 GO:1903844 GO:1903845

KEGG Pathways

Metabolic & Signaling

ko03013 map03013

Pfam Domains

Protein Families

WD40

Protein Analysis

115

Amino Acids

12.7

Weight (kDa)

6.64

Isoelectric Point (pI)

43.25

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0019030)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr6g0285211
rosa_laevigata	RLG00000012661
rosa_multiflora	Rmu_sc0005710.1_g000002 Rmu_sc0006801.1_g000008 Rmu_sc0006801.1_g000009
rosa_roxburghii	Rroxscaffold_7G00183410
rosa_samantha	Rh6AG283500 Rh6AG283600 Rh6CG286100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	95
AccB1I	GGYRCC	1 cut(s)	95
AccBSI	CCGCTC	1 cut(s)	211
AccI	GTMKAC	1 cut(s)	289
AciI	CCGC	2 cut(s)	211, 242
AclWI	GGATC	1 cut(s)	72
AfaI	GTAC	3 cut(s)	97, 127, 300
AfiI	CCNNNNNNNGG	3 cut(s)	27, 61, 210
AgsI	TTSAA	1 cut(s)	163
AluBI	AGCT	2 cut(s)	131, 335
AluI	AGCT	2 cut(s)	131, 335
AlwI	GGATC	1 cut(s)	72
AlwNI	CAGNNNCTG	1 cut(s)	86
ApeKI	GCWGC	1 cut(s)	227
Asp718I	GGTACC	1 cut(s)	95
AsuHPI	GGTGA	1 cut(s)	10
BaeI	ACNNNNGTAYC	2 cut(s)	87, 120
BanI	GGYRCC	1 cut(s)	95
BbvI	GCAGC	1 cut(s)	214
BccI	CCATC	3 cut(s)	29, 143, 278
BfaI	CTAG	1 cut(s)	302
BfmI	CTRYAG	1 cut(s)	73
BisI	GCNGC	1 cut(s)	228
BlsI	GCNGC	1 cut(s)	229
BmcAI	AGTACT	1 cut(s)	300
BmiI	GGNNCC	1 cut(s)	97
BmsI	GCATC	2 cut(s)	40, 245
BpmI	CTGGAG	1 cut(s)	171
BsaJI	CCNNGG	1 cut(s)	204
Bsc4I	CCNNNNNNNGG	3 cut(s)	27, 61, 210
Bse1I	ACTGG	1 cut(s)	188
BseDI	CCNNGG	1 cut(s)	204
BseGI	GGATG	1 cut(s)	289
BseLI	CCNNNNNNNGG	3 cut(s)	27, 61, 210
BseNI	ACTGG	1 cut(s)	188
BseXI	GCAGC	1 cut(s)	214
BshNI	GGYRCC	1 cut(s)	95
BslI	CCNNNNNNNGG	3 cut(s)	27, 61, 210
BsmI	GAATGC	1 cut(s)	220
Bsp143I	GATC	1 cut(s)	64
BspACI	CCGC	2 cut(s)	211, 242
BspLI	GGNNCC	1 cut(s)	97
BspPI	GGATC	1 cut(s)	72
BspT107I	GGYRCC	1 cut(s)	95
BsrBI	CCGCTC	1 cut(s)	211
BsrI	ACTGG	1 cut(s)	188
BssECI	CCNNGG	1 cut(s)	204
BssMI	GATC	1 cut(s)	64
BssT1I	CCWWGG	1 cut(s)	204
Bst4CI	ACNGT	3 cut(s)	88, 125, 253
Bst6I	CTCTTC	1 cut(s)	5
BstDEI	CTNAG	1 cut(s)	107
BstF5I	GGATG	1 cut(s)	289
BstKTI	GATC	1 cut(s)	67
BstMBI	GATC	1 cut(s)	64
BstMWI	GCNNNNNNNGC	2 cut(s)	224, 233
BstSFI	CTRYAG	1 cut(s)	73
BstV1I	GCAGC	1 cut(s)	214
BstX2I	RGATCY	1 cut(s)	64
BstYI	RGATCY	1 cut(s)	64
BtsCI	GGATG	1 cut(s)	289
BtsIMutI	CAGTG	1 cut(s)	249
CaiI	CAGNNNCTG	1 cut(s)	86
CseI	GACGC	1 cut(s)	191
Csp6I	GTAC	3 cut(s)	96, 126, 299
CviAII	CATG	2 cut(s)	179, 278
CviJI	RGCY	2 cut(s)	131, 335
CviKI_1	RGCY	2 cut(s)	131, 335
CviQI	GTAC	3 cut(s)	96, 126, 299
DdeI	CTNAG	1 cut(s)	107
DpnI	GATC	1 cut(s)	66
DpnII	GATC	1 cut(s)	64
Eam1104I	CTCTTC	1 cut(s)	5
EarI	CTCTTC	1 cut(s)	5
Eco130I	CCWWGG	1 cut(s)	204
EcoT14I	CCWWGG	1 cut(s)	204
ErhI	CCWWGG	1 cut(s)	204
FaeI	CATG	2 cut(s)	182, 281
FaiI	YATR	6 cut(s)	75, 134, 180, 193, 225, 279
FatI	CATG	2 cut(s)	178, 277
FblI	GTMKAC	1 cut(s)	289
Fnu4HI	GCNGC	1 cut(s)	228
FokI	GGATG	1 cut(s)	296
Fsp4HI	GCNGC	1 cut(s)	228
FspBI	CTAG	1 cut(s)	302
GluI	GCNGC	1 cut(s)	228
GsuI	CTGGAG	1 cut(s)	171
HgaI	GACGC	1 cut(s)	191
Hin1II	CATG	2 cut(s)	182, 281
HinfI	GANTC	1 cut(s)	15
HphI	GGTGA	1 cut(s)	10
Hpy166II	GTNNAC	1 cut(s)	290
Hpy188I	TCNGA	1 cut(s)	332
Hpy188III	TCNNGA	1 cut(s)	174
Hpy8I	GTNNAC	1 cut(s)	290
HpyAV	CCTTC	2 cut(s)	20, 109
HpyCH4III	ACNGT	3 cut(s)	88, 125, 253
HpyCH4V	TGCA	6 cut(s)	52, 113, 230, 236, 249, 324
HpyF10VI	GCNNNNNNNGC	2 cut(s)	224, 233
HpyF3I	CTNAG	1 cut(s)	107
Hsp92II	CATG	2 cut(s)	182, 281
KpnI	GGTACC	1 cut(s)	99
Kzo9I	GATC	1 cut(s)	64
LmnI	GCTCC	2 cut(s)	190, 208
LpnPI	CCDG	3 cut(s)	20, 159, 201
Lsp1109I	GCAGC	1 cut(s)	214
LweI	GCATC	2 cut(s)	40, 245
MaeI	CTAG	1 cut(s)	302
MaeIII	GTNAC	1 cut(s)	82
MalI	GATC	1 cut(s)	66
MbiI	CCGCTC	1 cut(s)	211
MboI	GATC	1 cut(s)	64
MboII	GAAGA	4 cut(s)	22, 158, 175, 268
MfeI	CAATTG	1 cut(s)	47
MflI	RGATCY	1 cut(s)	64
MluCI	AATT	1 cut(s)	47
MnlI	CCTC	3 cut(s)	85, 135, 274
MslI	CAYNNNNRTG	1 cut(s)	282
MspA1I	CMGCKG	1 cut(s)	242
MunI	CAATTG	1 cut(s)	47
Mva1269I	GAATGC	1 cut(s)	220
MwoI	GCNNNNNNNGC	2 cut(s)	224, 233
NdeII	GATC	1 cut(s)	64
NlaIII	CATG	2 cut(s)	182, 281
NlaIV	GGNNCC	1 cut(s)	97
PctI	GAATGC	1 cut(s)	220
PfeI	GAWTC	1 cut(s)	15
PkrI	GCNGC	1 cut(s)	229
PspN4I	GGNNCC	1 cut(s)	97
PstNI	CAGNNNCTG	1 cut(s)	86
PsuI	RGATCY	1 cut(s)	64
RsaI	GTAC	3 cut(s)	97, 127, 300
RsaNI	GTAC	3 cut(s)	96, 126, 299
RseI	CAYNNNNRTG	1 cut(s)	282
SatI	GCNGC	1 cut(s)	228
Sau3AI	GATC	1 cut(s)	64
ScaI	AGTACT	1 cut(s)	300
SetI	ASST	3 cut(s)	101, 133, 337
SfaNI	GCATC	2 cut(s)	40, 245
SfcI	CTRYAG	1 cut(s)	73
SmiMI	CAYNNNNRTG	1 cut(s)	282
Sse9I	AATT	1 cut(s)	47
SsiI	CCGC	2 cut(s)	211, 242
SspI	AATATT	1 cut(s)	170
SspMI	CTAG	1 cut(s)	302
StyI	CCWWGG	1 cut(s)	204
TaaI	ACNGT	3 cut(s)	88, 125, 253
TaqI	TCGA	2 cut(s)	24, 140
TasI	AATT	1 cut(s)	47
TatI	WGTACW	2 cut(s)	125, 298
TfiI	GAWTC	1 cut(s)	15
TscAI	CASTG	1 cut(s)	256
TseI	GCWGC	1 cut(s)	227
TspRI	CASTG	1 cut(s)	256
XmiI	GTMKAC	1 cut(s)	289
XspI	CTAG	1 cut(s)	302
ZrmI	AGTACT	1 cut(s)	300

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.