Rh6AG283500

Contains the following InterPro domains WD40 repeat 2 (InterPro IPR019782), WD40 repeat-like-containing domain (InterPro IPR011046), WD40 repeat, conserved site (InterPro IPR019775), WD40-repeat-containing domain (InterPro IPR017986), WD40 YVTN repeat-like-containing domain (InterPro IPR015943), WD40 repeat (InterPro IPR001680), WD40 repeat, subgroup (InterPro IPR019781)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
OG0019030
Physical Location & Seq
Forward (+)
47919613 .. 47920899
1287 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG283500.1

Sequence Viewer

Length: 327 bp
ATGGACTCACATTCTGCAAGTTCAACTAATCTGCAAGTCGTGGATCTTTCCTATAGTTCAGTTATTGTTGAGGGTACCTTCGTCCTTAGTGTAAGTAAAGACAGTACAACTATGCTTTCGAGGGAAGATGGAACTCACTTGAAGCAATATTCTGGACATGACGCTCCAGTATGGAGTTGTTCCTTGGAGCGGAATGCTGTGTATGCTGCAACTGCATCAGCGGATTGCACTGTGAAGATTTGGCGTGGAATAGAACATAAGGATGGTCTACTGAAAGTACTAGAAACACATCAAAACCCTTGCATTGTCCGAGCTTATGCTTTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03013 map03013
Pfam Domains
Protein Families
WD40

Protein Analysis

108

Amino Acids

11.83

Weight (kDa)

5.88

Isoelectric Point (pI)

32.9

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
WD40_Prp19 PF24814 4 - 99 4.2e-08 Prp19 WD40 domain
Beta-prop_THOC3 PF25174 12 - 83 1.5e-06 THOC3 beta-propeller domain
Beta-prop_WDR5 PF25175 13 - 101 2.1e-08 WDR5 beta-propeller domain
EIF3I PF24805 24 - 83 4.3e-09 EIF3I
WD40_WDHD1_1st PF24817 24 - 83 6.1e-08 WDHD1 first WD40 domain
WD40 PF00400 45 - 81 2.6e-07 WD domain, G-beta repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0019030)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr6g0285211
rosa_laevigata RLG00000012661
rosa_multiflora Rmu_sc0005710.1_g000002 Rmu_sc0006801.1_g000008 Rmu_sc0006801.1_g000009
rosa_roxburghii Rroxscaffold_7G00183410
rosa_samantha Rh6AG283500 Rh6AG283600 Rh6CG286100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 74
AccB1I GGYRCC 1 cut(s) 74
AccBSI CCGCTC 1 cut(s) 190
AccI GTMKAC 1 cut(s) 268
AciI CCGC 2 cut(s) 190, 221
AclWI GGATC 1 cut(s) 51
AfaI GTAC 3 cut(s) 76, 106, 279
AfiI CCNNNNNNNGG 1 cut(s) 189
AgsI TTSAA 2 cut(s) 24, 142
AluBI AGCT 1 cut(s) 314
AluI AGCT 1 cut(s) 314
AlwI GGATC 1 cut(s) 51
ApeKI GCWGC 1 cut(s) 206
Asp718I GGTACC 1 cut(s) 74
BaeI ACNNNNGTAYC 2 cut(s) 66, 99
BanI GGYRCC 1 cut(s) 74
BbvI GCAGC 1 cut(s) 193
BccI CCATC 2 cut(s) 122, 257
BfaI CTAG 1 cut(s) 281
BfmI CTRYAG 1 cut(s) 52
BisI GCNGC 1 cut(s) 207
BlsI GCNGC 1 cut(s) 208
BmcAI AGTACT 1 cut(s) 279
BmiI GGNNCC 1 cut(s) 76
BmsI GCATC 1 cut(s) 224
BpmI CTGGAG 1 cut(s) 150
BsaJI CCNNGG 1 cut(s) 183
Bsc4I CCNNNNNNNGG 1 cut(s) 189
Bse1I ACTGG 1 cut(s) 167
BseDI CCNNGG 1 cut(s) 183
BseGI GGATG 1 cut(s) 268
BseLI CCNNNNNNNGG 1 cut(s) 189
BseNI ACTGG 1 cut(s) 167
BseXI GCAGC 1 cut(s) 193
BshNI GGYRCC 1 cut(s) 74
BslI CCNNNNNNNGG 1 cut(s) 189
BsmI GAATGC 1 cut(s) 199
Bsp143I GATC 1 cut(s) 43
BspACI CCGC 2 cut(s) 190, 221
BspLI GGNNCC 1 cut(s) 76
BspPI GGATC 1 cut(s) 51
BspT107I GGYRCC 1 cut(s) 74
BsrBI CCGCTC 1 cut(s) 190
BsrI ACTGG 1 cut(s) 167
BssECI CCNNGG 1 cut(s) 183
BssMI GATC 1 cut(s) 43
BssT1I CCWWGG 1 cut(s) 183
Bst4CI ACNGT 2 cut(s) 104, 232
BstDEI CTNAG 1 cut(s) 86
BstF5I GGATG 1 cut(s) 268
BstKTI GATC 1 cut(s) 46
BstMBI GATC 1 cut(s) 43
BstMWI GCNNNNNNNGC 2 cut(s) 203, 212
BstSFI CTRYAG 1 cut(s) 52
BstV1I GCAGC 1 cut(s) 193
BstX2I RGATCY 1 cut(s) 43
BstYI RGATCY 1 cut(s) 43
BtsCI GGATG 1 cut(s) 268
BtsIMutI CAGTG 1 cut(s) 228
CseI GACGC 1 cut(s) 170
Csp6I GTAC 3 cut(s) 75, 105, 278
CviAII CATG 1 cut(s) 158
CviJI RGCY 1 cut(s) 314
CviKI_1 RGCY 1 cut(s) 314
CviQI GTAC 3 cut(s) 75, 105, 278
DdeI CTNAG 1 cut(s) 86
DpnI GATC 1 cut(s) 45
DpnII GATC 1 cut(s) 43
Eco130I CCWWGG 1 cut(s) 183
EcoT14I CCWWGG 1 cut(s) 183
ErhI CCWWGG 1 cut(s) 183
FaeI CATG 1 cut(s) 161
FaiI YATR 7 cut(s) 54, 113, 159, 172, 204, 258, 318
FatI CATG 1 cut(s) 157
FblI GTMKAC 1 cut(s) 268
Fnu4HI GCNGC 1 cut(s) 207
FokI GGATG 1 cut(s) 275
Fsp4HI GCNGC 1 cut(s) 207
FspBI CTAG 1 cut(s) 281
GluI GCNGC 1 cut(s) 207
GsuI CTGGAG 1 cut(s) 150
HgaI GACGC 1 cut(s) 170
Hin1II CATG 1 cut(s) 161
HinfI GANTC 1 cut(s) 5
Hpy166II GTNNAC 1 cut(s) 269
Hpy188I TCNGA 1 cut(s) 311
Hpy188III TCNNGA 1 cut(s) 153
Hpy8I GTNNAC 1 cut(s) 269
HpyAV CCTTC 1 cut(s) 88
HpyCH4III ACNGT 2 cut(s) 104, 232
HpyCH4V TGCA 6 cut(s) 17, 34, 209, 215, 228, 303
HpyF10VI GCNNNNNNNGC 2 cut(s) 203, 212
HpyF3I CTNAG 1 cut(s) 86
Hsp92II CATG 1 cut(s) 161
KpnI GGTACC 1 cut(s) 78
Kzo9I GATC 1 cut(s) 43
LmnI GCTCC 2 cut(s) 169, 187
LpnPI CCDG 2 cut(s) 138, 180
Lsp1109I GCAGC 1 cut(s) 193
LweI GCATC 1 cut(s) 224
MaeI CTAG 1 cut(s) 281
MalI GATC 1 cut(s) 45
MbiI CCGCTC 1 cut(s) 190
MboI GATC 1 cut(s) 43
MboII GAAGA 2 cut(s) 137, 247
MflI RGATCY 1 cut(s) 43
MnlI CCTC 2 cut(s) 64, 114
MslI CAYNNNNRTG 1 cut(s) 261
MspA1I CMGCKG 1 cut(s) 221
Mva1269I GAATGC 1 cut(s) 199
MwoI GCNNNNNNNGC 2 cut(s) 203, 212
NdeII GATC 1 cut(s) 43
NlaIII CATG 1 cut(s) 161
NlaIV GGNNCC 1 cut(s) 76
PctI GAATGC 1 cut(s) 199
PkrI GCNGC 1 cut(s) 208
PspN4I GGNNCC 1 cut(s) 76
PsuI RGATCY 1 cut(s) 43
RsaI GTAC 3 cut(s) 76, 106, 279
RsaNI GTAC 3 cut(s) 75, 105, 278
RseI CAYNNNNRTG 1 cut(s) 261
SatI GCNGC 1 cut(s) 207
Sau3AI GATC 1 cut(s) 43
ScaI AGTACT 1 cut(s) 279
SetI ASST 2 cut(s) 80, 316
SfaNI GCATC 1 cut(s) 224
SfcI CTRYAG 1 cut(s) 52
SmiMI CAYNNNNRTG 1 cut(s) 261
SsiI CCGC 2 cut(s) 190, 221
SspI AATATT 1 cut(s) 149
SspMI CTAG 1 cut(s) 281
StyI CCWWGG 1 cut(s) 183
TaaI ACNGT 2 cut(s) 104, 232
TaqI TCGA 1 cut(s) 119
TatI WGTACW 2 cut(s) 104, 277
TscAI CASTG 1 cut(s) 235
TseI GCWGC 1 cut(s) 206
TspRI CASTG 1 cut(s) 235
XmiI GTMKAC 1 cut(s) 268
XspI CTAG 1 cut(s) 281
ZrmI AGTACT 1 cut(s) 279
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.