Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0019029

Physical Location & Seq

Genomic Coordinates Forward (+)

57532561 .. 57536140

Gene Structure 3580 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ26523

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1035 bp

ATGAGAGGCATGTACAACATAATATACGTTTGCCCTGAGACAATATTAAGACTGATAAAACCACTCCAAAAGTTGGCAGAATTACGTGGAATTGCTCTTTTTGCAATTGATGAAGTGCATTGTGTTTCAAAGTGGGGCCATGATTTTTGGCCTGACTACAGGAGATTGTCTGAGTTGCGAAAGAACTTCAGTGCTAGCAATTTAAAATTCTTAAAATTCGATATACCACTGATGGCATTAACTGCTACTGCCACAATTCAGGTTCGTGAAGACATTCTTAAGTCATTGTCCATGTCAAAGGAAGCAAAAGTTGTGCTTACATCATTTTTCCGGCCAAATCTAAGGTTCAGGGTACAGCATAGTAGAACATCAACATCATCATATGAGAATGATTTTTATGACTTGATAGACATGTATACGGGCAAGAGAGGAAAAGGTGAAAAGAAACAAATGGTCATCTCAGAAGAAGTAAACGAAGCGCTGGACAGCTCATCTAACAGTAGTATGTCAGAGGCTGATTGCATTTCAGAGCATGATTTAGACAATATCGAGGATGGTAATTCCAACAGATATGATGAAGCAAGTTCACTCCAGGAAAATGGTTCAAGTGCTTCAAAGGGAAGGGAGCTGTCAGTTGACTACTTGGAAAATGATGTTGACATCTTTCAGAGTGTTAATGATTGGGATGTTAGCTGTGGTGAAATCTGTGGACTACCTCTTTGTGAGGACTTGACTACTAGAAAAGAAACTACATTGGAGGTACTTGATCTGCCGAGACAACCAGAAGCAAGACTGAGACTTCTGCAACAGCCTCTAAATAAGGGATCAACTATCATATATGTTCCTACGAGAAAACAAACGTTGAAAATTTCAACTTACCTTTCCAAGTGTGGAGTGAAGGCTGCTGCCTATAATGCAGGGTTGCCAAAATCACGTCTGAGGCAGGTCCACAAGATGTTTCATGAAAATACATTAGAGGTTGTTGTGGCAGATGCAAAGAAAGCTAACCTGGAGGGATCCACTTTGAAGTACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000724 GO:0000725 GO:0003674 GO:0003676 GO:0003677 GO:0003678 GO:0003824 GO:0004003 GO:0004386 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005737 GO:0006139 GO:0006259 GO:0006281 GO:0006302 GO:0006310 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0008026 GO:0008094 GO:0008150 GO:0008152 GO:0009378 GO:0009987 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0032392 GO:0032508 GO:0033554 GO:0034641 GO:0042623 GO:0043138 GO:0043140 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044464 GO:0046483 GO:0050896 GO:0051276 GO:0051716 GO:0070035 GO:0071103 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:0140097 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DEAD Helicase_C RecQ_Zn_bind

Protein Analysis

344

Amino Acids

39.03

Weight (kDa)

6.36

Isoelectric Point (pI)

43.13

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DEAD	PF00270	5 - 89	8e-06	DEAD/DEAH box helicase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0019029)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr6g0295551
rosa_laevigata	RLG00000009400
rosa_multiflora	Rmu_sc0002935.1_g000010 Rmu_sc0016819.1_g000001 Rmu_sc0031479.1_g000001
rosa_samantha	Rh5BG325300 Rh5BG493900 Rh5DG336100 Rh6CG379700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	934
AccB7I	CCANNNNNTGG	1 cut(s)	73
AccI	GTMKAC	1 cut(s)	416
AclI	AACGTT	1 cut(s)	860
AclWI	GGATC	3 cut(s)	832, 1011, 1024
AcoI	YGGCCR	1 cut(s)	332
AcsI	RAATTY	3 cut(s)	206, 215, 867
AcuI	CTGAAG	1 cut(s)	172
AfaI	GTAC	4 cut(s)	14, 354, 762, 1031
AfeI	AGCGCT	1 cut(s)	480
AfiI	CCNNNNNNNGG	1 cut(s)	73
AflII	CTTAAG	1 cut(s)	278
AflIII	ACRYGT	1 cut(s)	411
AgsI	TTSAA	6 cut(s)	129, 606, 615, 865, 873, 1027
AjiI	CACGTC	1 cut(s)	935
AjnI	CCWGG	2 cut(s)	591, 1008
AluBI	AGCT	4 cut(s)	489, 628, 693, 1004
AluI	AGCT	4 cut(s)	489, 628, 693, 1004
Alw26I	GTCTC	3 cut(s)	32, 769, 790
AlwI	GGATC	3 cut(s)	832, 1011, 1024
AlwNI	CAGNNNCTG	1 cut(s)	515
Aor51HI	AGCGCT	1 cut(s)	480
AoxI	GGCC	3 cut(s)	136, 149, 332
ApeKI	GCWGC	2 cut(s)	902, 905
ApoI	RAATTY	3 cut(s)	206, 215, 867
ArsI	GACNNNNNNTTYG	2 cut(s)	702, 734
Asp700I	GAANNNNTTC	1 cut(s)	273
AspLEI	GCGC	1 cut(s)	481
AspS9I	GGNCC	2 cut(s)	136, 946
AsuHPI	GGTGA	2 cut(s)	449, 710
AsuNHI	GCTAGC	1 cut(s)	194
AvaII	GGWCC	1 cut(s)	946
BamHI	GGATCC	1 cut(s)	1016
BbsI	GAAGAC	1 cut(s)	276
BbvI	GCAGC	2 cut(s)	889, 892
BccI	CCATC	2 cut(s)	226, 548
BciT130I	CCWGG	2 cut(s)	593, 1010
BcoDI	GTCTC	3 cut(s)	32, 769, 790
BfaI	CTAG	2 cut(s)	195, 738
BfmI	CTRYAG	1 cut(s)	157
BfoI	RGCGCY	1 cut(s)	482
BfrI	CTTAAG	1 cut(s)	278
BfuAI	ACCTGC	1 cut(s)	934
BisI	GCNGC	2 cut(s)	903, 906
BlsI	GCNGC	2 cut(s)	904, 907
BmcAI	AGTACT	1 cut(s)	1031
Bme1390I	CCNGG	2 cut(s)	593, 1010
Bme18I	GGWCC	1 cut(s)	946
BmgBI	CACGTC	1 cut(s)	935
BmgT120I	GGNCC	2 cut(s)	136, 946
BmiI	GGNNCC	2 cut(s)	137, 1018
BmrFI	CCNGG	2 cut(s)	593, 1010
BmsI	GCATC	1 cut(s)	982
BmtI	GCTAGC	1 cut(s)	198
BpiI	GAAGAC	1 cut(s)	276
BpmI	CTGGAG	2 cut(s)	575, 1031
BsaAI	YACGTR	1 cut(s)	86
Bsc4I	CCNNNNNNNGG	1 cut(s)	73
BseBI	CCWGG	2 cut(s)	593, 1010
BseGI	GGATG	2 cut(s)	559, 691
BseLI	CCNNNNNNNGG	1 cut(s)	73
BseMII	CTCAG	5 cut(s)	27, 162, 474, 785, 929
BseXI	GCAGC	2 cut(s)	889, 892
BshFI	GGCC	3 cut(s)	138, 151, 334
BsiSI	CCGG	1 cut(s)	331
BslI	CCNNNNNNNGG	1 cut(s)	73
BsmAI	GTCTC	3 cut(s)	32, 769, 790
BsnI	GGCC	3 cut(s)	138, 151, 334
Bsp1407I	TGTACA	1 cut(s)	12
Bsp143I	GATC	3 cut(s)	766, 824, 1016
BspANI	GGCC	3 cut(s)	138, 151, 334
BspCNI	CTCAG	5 cut(s)	28, 163, 473, 786, 930
BspHI	TCATGA	1 cut(s)	961
BspLI	GGNNCC	2 cut(s)	137, 1018
BspMI	ACCTGC	1 cut(s)	934
BspOI	GCTAGC	1 cut(s)	198
BspPI	GGATC	3 cut(s)	832, 1011, 1024
BspTI	CTTAAG	1 cut(s)	278
BsrGI	TGTACA	1 cut(s)	12
BssMI	GATC	3 cut(s)	766, 824, 1016
BssNAI	GTATAC	1 cut(s)	417
Bst1107I	GTATAC	1 cut(s)	417
Bst2UI	CCWGG	2 cut(s)	593, 1010
Bst4CI	ACNGT	1 cut(s)	500
BstAFI	CTTAAG	1 cut(s)	278
BstAPI	GCANNNNNTGC	1 cut(s)	242
BstAUI	TGTACA	1 cut(s)	12
BstBAI	YACGTR	1 cut(s)	86
BstC8I	GCNNGC	1 cut(s)	196
BstDEI	CTNAG	6 cut(s)	36, 171, 341, 460, 794, 938
BstF5I	GGATG	2 cut(s)	559, 691
BstH2I	RGCGCY	1 cut(s)	482
BstHHI	GCGC	1 cut(s)	481
BstKTI	GATC	3 cut(s)	769, 827, 1019
BstMAI	GTCTC	3 cut(s)	32, 769, 790
BstMBI	GATC	3 cut(s)	766, 824, 1016
BstMWI	GCNNNNNNNGC	4 cut(s)	101, 242, 914, 1001
BstNI	CCWGG	2 cut(s)	593, 1010
BstNSI	RCATGY	2 cut(s)	13, 415
BstSCI	CCNGG	2 cut(s)	591, 1008
BstSFI	CTRYAG	1 cut(s)	157
BstV1I	GCAGC	2 cut(s)	889, 892
BstV2I	GAAGAC	1 cut(s)	276
BstX2I	RGATCY	1 cut(s)	1016
BstXI	CCANNNNNNTGG	1 cut(s)	599
BstYI	RGATCY	1 cut(s)	1016
BstZ17I	GTATAC	1 cut(s)	417
BsuRI	GGCC	3 cut(s)	138, 151, 334
BtrI	CACGTC	1 cut(s)	935
BtsCI	GGATG	2 cut(s)	559, 691
BtsIMutI	CAGTG	2 cut(s)	196, 227
BveI	ACCTGC	1 cut(s)	934
Cac8I	GCNNGC	1 cut(s)	196
CaiI	CAGNNNCTG	1 cut(s)	515
CciI	TCATGA	1 cut(s)	961
CfoI	GCGC	1 cut(s)	481
Cfr13I	GGNCC	2 cut(s)	136, 946
Csp6I	GTAC	4 cut(s)	13, 353, 761, 1030
CviAII	CATG	6 cut(s)	10, 140, 292, 412, 533, 962
CviQI	GTAC	4 cut(s)	13, 353, 761, 1030
DdeI	CTNAG	6 cut(s)	36, 171, 341, 460, 794, 938
DpnI	GATC	3 cut(s)	768, 826, 1018
DpnII	GATC	3 cut(s)	766, 824, 1016
DraI	TTTAAA	1 cut(s)	204
EaeI	YGGCCR	1 cut(s)	332
Eco47I	GGWCC	1 cut(s)	946
Eco47III	AGCGCT	1 cut(s)	480
Eco57I	CTGAAG	1 cut(s)	172
EcoRII	CCWGG	2 cut(s)	591, 1008
FaeI	CATG	6 cut(s)	13, 143, 295, 415, 536, 965
FalI	AAGNNNNNCTT	4 cut(s)	261, 293, 300, 332
FatI	CATG	6 cut(s)	9, 139, 291, 411, 532, 961
FauNDI	CATATG	1 cut(s)	382
FblI	GTMKAC	1 cut(s)	416
Fnu4HI	GCNGC	2 cut(s)	903, 906
FokI	GGATG	2 cut(s)	566, 698
Fsp4HI	GCNGC	2 cut(s)	903, 906
FspBI	CTAG	2 cut(s)	195, 738
GlaI	GCGC	1 cut(s)	480
GluI	GCNGC	2 cut(s)	903, 906
GsuI	CTGGAG	2 cut(s)	575, 1031
HaeII	RGCGCY	1 cut(s)	482
HaeIII	GGCC	3 cut(s)	138, 151, 334
HapII	CCGG	1 cut(s)	331
HhaI	GCGC	1 cut(s)	481
Hin1II	CATG	6 cut(s)	13, 143, 295, 415, 536, 965
Hin6I	GCGC	1 cut(s)	479
HinP1I	GCGC	1 cut(s)	479
HincII	GTYRAC	2 cut(s)	637, 658
HindII	GTYRAC	2 cut(s)	637, 658
HpaII	CCGG	1 cut(s)	331
HphI	GGTGA	2 cut(s)	449, 710
Hpy166II	GTNNAC	7 cut(s)	417, 472, 587, 637, 658, 710, 949
Hpy188I	TCNGA	6 cut(s)	172, 463, 511, 529, 669, 939
Hpy188III	TCNNGA	2 cut(s)	266, 962
Hpy8I	GTNNAC	7 cut(s)	417, 472, 587, 637, 658, 710, 949
HpyAV	CCTTC	2 cut(s)	615, 892
HpyCH4III	ACNGT	1 cut(s)	500
HpyCH4IV	ACGT	4 cut(s)	27, 85, 860, 934
HpyCH4V	TGCA	6 cut(s)	104, 118, 522, 805, 917, 995
HpyF10VI	GCNNNNNNNGC	4 cut(s)	101, 242, 914, 1001
HpyF3I	CTNAG	6 cut(s)	36, 171, 341, 460, 794, 938
HpySE526I	ACGT	4 cut(s)	27, 85, 860, 934
Hsp92II	CATG	6 cut(s)	13, 143, 295, 415, 536, 965
HspAI	GCGC	1 cut(s)	479
Kzo9I	GATC	3 cut(s)	766, 824, 1016
LmnI	GCTCC	1 cut(s)	625
Lsp1109I	GCAGC	2 cut(s)	889, 892
LweI	GCATC	1 cut(s)	982
MaeI	CTAG	2 cut(s)	195, 738
MaeII	ACGT	4 cut(s)	27, 85, 860, 934
MalI	GATC	3 cut(s)	768, 826, 1018
MboI	GATC	3 cut(s)	766, 824, 1016
MboII	GAAGA	2 cut(s)	281, 476
MfeI	CAATTG	1 cut(s)	105
MflI	RGATCY	1 cut(s)	1016
MluCI	AATT	9 cut(s)	80, 90, 105, 199, 206, 215, 255, 559, 867
MmeI	TCCRAC	1 cut(s)	588
MroXI	GAANNNNTTC	1 cut(s)	273
MseI	TTAA	6 cut(s)	47, 203, 212, 239, 279, 675
MspCI	CTTAAG	1 cut(s)	278
MspI	CCGG	1 cut(s)	331
MspR9I	CCNGG	2 cut(s)	593, 1010
MunI	CAATTG	1 cut(s)	105
MvaI	CCWGG	2 cut(s)	593, 1010
MwoI	GCNNNNNNNGC	4 cut(s)	101, 242, 914, 1001
NdeI	CATATG	1 cut(s)	382
NdeII	GATC	3 cut(s)	766, 824, 1016
NheI	GCTAGC	1 cut(s)	194
NlaIII	CATG	6 cut(s)	13, 143, 295, 415, 536, 965
NlaIV	GGNNCC	2 cut(s)	137, 1018
NmeAIII	GCCGAG	1 cut(s)	798
NspI	RCATGY	2 cut(s)	13, 415
PagI	TCATGA	1 cut(s)	961
PciI	ACATGT	1 cut(s)	411
PdmI	GAANNNNTTC	1 cut(s)	273
PflMI	CCANNNNNTGG	1 cut(s)	73
PfoI	TCCNGGA	1 cut(s)	591
PkrI	GCNGC	2 cut(s)	904, 907
Ppu21I	YACGTR	1 cut(s)	86
PscI	ACATGT	1 cut(s)	411
Psp1406I	AACGTT	1 cut(s)	860
Psp6I	CCWGG	2 cut(s)	591, 1008
PspGI	CCWGG	2 cut(s)	591, 1008
PspN4I	GGNNCC	2 cut(s)	137, 1018
PspPI	GGNCC	2 cut(s)	136, 946
PstNI	CAGNNNCTG	1 cut(s)	515
PsuI	RGATCY	1 cut(s)	1016
RsaI	GTAC	4 cut(s)	14, 354, 762, 1031
RsaNI	GTAC	4 cut(s)	13, 353, 761, 1030
SaqAI	TTAA	6 cut(s)	47, 203, 212, 239, 279, 675
SatI	GCNGC	2 cut(s)	903, 906
Sau3AI	GATC	3 cut(s)	766, 824, 1016
Sau96I	GGNCC	2 cut(s)	136, 946
ScaI	AGTACT	1 cut(s)	1031
ScrFI	CCNGG	2 cut(s)	593, 1010
SfaNI	GCATC	1 cut(s)	982
SfcI	CTRYAG	1 cut(s)	157
SinI	GGWCC	1 cut(s)	946
SmlI	CTYRAG	1 cut(s)	278
SmoI	CTYRAG	1 cut(s)	278
Sse9I	AATT	9 cut(s)	80, 90, 105, 199, 206, 215, 255, 559, 867
SspI	AATATT	1 cut(s)	45
SspMI	CTAG	2 cut(s)	195, 738
StyD4I	CCNGG	2 cut(s)	591, 1008
TaaI	ACNGT	1 cut(s)	500
TaiI	ACGT	4 cut(s)	30, 88, 863, 937
TaqI	TCGA	2 cut(s)	219, 549
TasI	AATT	9 cut(s)	80, 90, 105, 199, 206, 215, 255, 559, 867
TatI	WGTACW	2 cut(s)	12, 1029
Tru1I	TTAA	6 cut(s)	47, 203, 212, 239, 279, 675
Tru9I	TTAA	6 cut(s)	47, 203, 212, 239, 279, 675
TscAI	CASTG	2 cut(s)	196, 234
TseI	GCWGC	2 cut(s)	902, 905
TspDTI	ATGAA	4 cut(s)	126, 591, 950, 978
TspRI	CASTG	2 cut(s)	196, 234
Van91I	CCANNNNNTGG	1 cut(s)	73
Vha464I	CTTAAG	1 cut(s)	278
VpaK11BI	GGWCC	1 cut(s)	946
XapI	RAATTY	3 cut(s)	206, 215, 867
XceI	RCATGY	2 cut(s)	13, 415
XmiI	GTMKAC	1 cut(s)	416
XmnI	GAANNNNTTC	1 cut(s)	273
XspI	CTAG	2 cut(s)	195, 738
ZrmI	AGTACT	1 cut(s)	1031

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.