RLG00000009400

No description available

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
Physical Location & Seq
Forward (+)
52355307 .. 52358076
2770 bp
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UTR
Exon/CDS
Intron
RLM00000009400

Sequence Viewer

Length: 456 bp
ATGTCCTTCTCCCCCACCCCTAAACCGTATCGATGTCCTTCTCCCCCAAATAGATTCAGCCTTATCAGAGTTCATCCCCAAAGCCGTCCGGGTTTGAAGACTCAAGCTACTGAATTCGGGACTGTGTTTCAATTAAGTTGGCCTGTTTACTTATCAAGGAAAGGATCGATCAAGATAATTCCATTCCATATCAACATGTTCTTCACCAAGGCTGAGGGTTCAACTTTTCTCCTGCCAAACGAGATTACATATATCAGCAAGATTCATAGAAAGGTGGTTTGCTTACTGATGACATTCTGCCCATCTTGGATCTTTTTATGGTTCTACTCAAGCTTTGTCATCTGGGGAAGCTTTATGGACGATGTTTACTTCTTGTTATTCGTGCTTCTCCTTCATTTACAATGCTTTTTGATTATCAAGTATGAGATCTTTAAGCTTCTCAAGATCAACACTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

152

Amino Acids

17.8

Weight (kDa)

9.73

Isoelectric Point (pI)

41.39

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0019029)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 2 cut(s) 172, 317
AcsI RAATTY 1 cut(s) 113
AflIII ACRYGT 1 cut(s) 195
AgsI TTSAA 3 cut(s) 97, 131, 222
AluBI AGCT 4 cut(s) 107, 333, 351, 436
AluI AGCT 4 cut(s) 107, 333, 351, 436
AlwI GGATC 2 cut(s) 172, 317
AoxI GGCC 1 cut(s) 140
ApoI RAATTY 1 cut(s) 113
AsuC2I CCSGG 1 cut(s) 90
AsuHPI GGTGA 1 cut(s) 196
BbsI GAAGAC 1 cut(s) 104
BbvCI CCTCAGC 1 cut(s) 213
BccI CCATC 1 cut(s) 310
BceAI ACGGC 1 cut(s) 69
BcnI CCSGG 1 cut(s) 90
BglII AGATCT 1 cut(s) 426
Bme1390I CCNGG 1 cut(s) 90
BmrFI CCNGG 1 cut(s) 90
BpiI GAAGAC 1 cut(s) 104
Bpu10I CCTNAGC 1 cut(s) 213
BpuEI CTTGAG 3 cut(s) 87, 313, 425
BpuMI CCSGG 1 cut(s) 90
Bsa29I ATCGAT 2 cut(s) 31, 167
BsaJI CCNNGG 1 cut(s) 207
BseCI ATCGAT 2 cut(s) 31, 167
BseDI CCNNGG 1 cut(s) 207
BseGI GGATG 1 cut(s) 73
BseMII CTCAG 1 cut(s) 204
BshFI GGCC 1 cut(s) 142
BshVI ATCGAT 2 cut(s) 31, 167
BsiSI CCGG 1 cut(s) 89
BslFI GGGAC 1 cut(s) 133
BsmFI GGGAC 1 cut(s) 133
BsnI GGCC 1 cut(s) 142
Bsp143I GATC 5 cut(s) 164, 168, 309, 426, 444
BspANI GGCC 1 cut(s) 142
BspCNI CTCAG 1 cut(s) 205
BspDI ATCGAT 2 cut(s) 31, 167
BspPI GGATC 2 cut(s) 172, 317
BssECI CCNNGG 1 cut(s) 207
BssMI GATC 5 cut(s) 164, 168, 309, 426, 444
BssT1I CCWWGG 1 cut(s) 207
Bst4CI ACNGT 2 cut(s) 27, 124
BstDEI CTNAG 1 cut(s) 213
BstF5I GGATG 1 cut(s) 73
BstKTI GATC 5 cut(s) 167, 171, 312, 429, 447
BstMBI GATC 5 cut(s) 164, 168, 309, 426, 444
BstNSI RCATGY 1 cut(s) 199
BstSCI CCNGG 1 cut(s) 88
BstV2I GAAGAC 1 cut(s) 104
BstX2I RGATCY 2 cut(s) 309, 426
BstYI RGATCY 2 cut(s) 309, 426
Bsu15I ATCGAT 2 cut(s) 31, 167
BsuRI GGCC 1 cut(s) 142
BsuTUI ATCGAT 2 cut(s) 31, 167
BtsCI GGATG 1 cut(s) 73
ClaI ATCGAT 2 cut(s) 31, 167
CviAII CATG 1 cut(s) 196
CviJI RGCY 8 cut(s) 60, 84, 107, 142, 212, 333, 351, 436
CviKI_1 RGCY 8 cut(s) 60, 84, 107, 142, 212, 333, 351, 436
DdeI CTNAG 1 cut(s) 213
DpnI GATC 5 cut(s) 166, 170, 311, 428, 446
DpnII GATC 5 cut(s) 164, 168, 309, 426, 444
Eco130I CCWWGG 1 cut(s) 207
EcoRI GAATTC 1 cut(s) 113
EcoT14I CCWWGG 1 cut(s) 207
ErhI CCWWGG 1 cut(s) 207
FaeI CATG 1 cut(s) 199
FaiI YATR 8 cut(s) 189, 197, 250, 252, 267, 319, 356, 423
FaqI GGGAC 1 cut(s) 133
FatI CATG 1 cut(s) 195
FokI GGATG 1 cut(s) 60
HaeIII GGCC 1 cut(s) 142
HapII CCGG 1 cut(s) 89
Hin1II CATG 1 cut(s) 199
HindIII AAGCTT 3 cut(s) 331, 349, 434
HinfI GANTC 3 cut(s) 54, 100, 262
HpaII CCGG 1 cut(s) 89
HphI GGTGA 1 cut(s) 196
Hpy166II GTNNAC 2 cut(s) 148, 367
Hpy188I TCNGA 1 cut(s) 68
Hpy188III TCNNGA 3 cut(s) 118, 172, 442
Hpy8I GTNNAC 2 cut(s) 148, 367
HpyAV CCTTC 3 cut(s) 16, 48, 401
HpyCH4III ACNGT 2 cut(s) 27, 124
HpyF3I CTNAG 1 cut(s) 213
Hsp92II CATG 1 cut(s) 199
Kzo9I GATC 5 cut(s) 164, 168, 309, 426, 444
LpnPI CCDG 4 cut(s) 102, 156, 245, 328
MalI GATC 5 cut(s) 166, 170, 311, 428, 446
MboI GATC 5 cut(s) 164, 168, 309, 426, 444
MboII GAAGA 2 cut(s) 109, 193
MflI RGATCY 2 cut(s) 309, 426
MluCI AATT 3 cut(s) 113, 131, 177
MlyI GAGTC 1 cut(s) 94
MnlI CCTC 1 cut(s) 208
MseI TTAA 2 cut(s) 134, 432
MspI CCGG 1 cut(s) 89
MspR9I CCNGG 1 cut(s) 90
NciI CCSGG 1 cut(s) 90
NdeII GATC 5 cut(s) 164, 168, 309, 426, 444
NlaIII CATG 1 cut(s) 199
NspI RCATGY 1 cut(s) 199
PciI ACATGT 1 cut(s) 195
PfeI GAWTC 2 cut(s) 54, 262
PleI GAGTC 1 cut(s) 94
PpsI GAGTC 1 cut(s) 94
PscI ACATGT 1 cut(s) 195
PsuI RGATCY 2 cut(s) 309, 426
SaqAI TTAA 2 cut(s) 134, 432
Sau3AI GATC 5 cut(s) 164, 168, 309, 426, 444
SchI GAGTC 1 cut(s) 94
ScrFI CCNGG 1 cut(s) 90
SetI ASST 5 cut(s) 109, 276, 335, 353, 438
SmlI CTYRAG 3 cut(s) 102, 328, 440
SmoI CTYRAG 3 cut(s) 102, 328, 440
Sse9I AATT 3 cut(s) 113, 131, 177
StyD4I CCNGG 1 cut(s) 88
StyI CCWWGG 1 cut(s) 207
TaaI ACNGT 2 cut(s) 27, 124
TaqI TCGA 2 cut(s) 31, 167
TasI AATT 3 cut(s) 113, 131, 177
TfiI GAWTC 2 cut(s) 54, 262
Tru1I TTAA 2 cut(s) 134, 432
Tru9I TTAA 2 cut(s) 134, 432
TspDTI ATGAA 3 cut(s) 62, 254, 383
XapI RAATTY 1 cut(s) 113
XceI RCATGY 1 cut(s) 199
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.