Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0031479.1

Orthogroup ID

OG0019029

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 1943

Gene Structure 1943 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0031479.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1113 bp

tgcttaaagctggcaaaacatggggtttctgcttgctttcttggatctggacaacctgatagtactgtggaaaataaagcaatgagaggcatgtacaacataatatacgtttgccctgagacaatattaagactgataaaaccactccaaaagttagcagaaatacgtgggattgctctttttgcaattgatgaagtgcattgtgtttcaaagtggggccatgattttcggcctgactacaggagattgtctgagttgcgaaagaacttcagtgctaacaatttaaaattcttaaaattcgatataccactgatggcattaactgctaccgccacaattcaggttcgtgaagacattcttaagtcattgtccatgtcaaaggaaacaaaagttgtgcttacttcatttttccggccgaatctaaggttcagggtacagcatagtagaacatcaacatcatcatatgagaatgatttttatgacttgatagacatgtatacgggcaagagaggaaaaggtgaaaagaaacaaatgatcatctcagaagaagtaaacgaagcgctggacagctcatctaacagtagtatgtcagaggctgattgcatttcagagcatgatttggacaatatcgaggatggtaattccgacagacatgatgaagcaatttcactccaggaaaatggttcaagtgcttcaaagggaagggagctgtcagttgactacttggaaaatgatgttgacatctttcagagtgttaatgattgggatgttagctgtggtgaattctgtggactacctctttgtgaggacttgaatactagaaaagaaactacatcggaggtacttgatccgctgagtcaaccagaagaaagactgagacttctgcaacagcccctagagaaaggatcaactatcatatatgttcctacgagaaaacaaacgttgaaaattgcaacttacctttccaagtgtggagtgaaggctgctgcctataatgcagggtgcagtctaaatgatgtggaaagatgttgggatgtggaaattggctgcattgctgaaatgacagtaatgttcatacacttggagatgaatacagatgatagattgttttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000724 GO:0000725 GO:0003674 GO:0003676 GO:0003677 GO:0003678 GO:0003824 GO:0004003 GO:0004386 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005737 GO:0006139 GO:0006259 GO:0006281 GO:0006302 GO:0006310 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0008026 GO:0008094 GO:0008150 GO:0008152 GO:0009378 GO:0009987 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0032392 GO:0032508 GO:0033554 GO:0034641 GO:0042623 GO:0043138 GO:0043140 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044464 GO:0046483 GO:0050896 GO:0051276 GO:0051716 GO:0070035 GO:0071103 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:0140097 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DEAD Helicase_C RecQ_Zn_bind

Protein Analysis

370

Amino Acids

41.82

Weight (kDa)

5.16

Isoelectric Point (pI)

41.1

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0019029)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr6g0295551
rosa_laevigata	RLG00000009400
rosa_multiflora	Rmu_sc0002935.1_g000010 Rmu_sc0016819.1_g000001 Rmu_sc0031479.1_g000001
rosa_samantha	Rh5BG325300 Rh5BG493900 Rh5DG336100 Rh6CG379700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	497
AciI	CCGC	2 cut(s)	330, 851
AclI	AACGTT	1 cut(s)	941
AclWI	GGATC	3 cut(s)	52, 842, 913
AcoI	YGGCCR	1 cut(s)	413
AcsI	RAATTY	3 cut(s)	287, 296, 782
AcuI	CTGAAG	1 cut(s)	253
AfaI	GTAC	4 cut(s)	64, 95, 435, 843
AfeI	AGCGCT	1 cut(s)	561
AflII	CTTAAG	1 cut(s)	359
AflIII	ACRYGT	1 cut(s)	492
AgsI	TTSAA	5 cut(s)	210, 687, 696, 814, 946
AjnI	CCWGG	1 cut(s)	672
AluBI	AGCT	4 cut(s)	10, 570, 709, 774
AluI	AGCT	4 cut(s)	10, 570, 709, 774
Alw26I	GTCTC	2 cut(s)	113, 871
AlwI	GGATC	3 cut(s)	52, 842, 913
AlwNI	CAGNNNCTG	1 cut(s)	596
Aor51HI	AGCGCT	1 cut(s)	561
AoxI	GGCC	3 cut(s)	217, 230, 413
ApeKI	GCWGC	3 cut(s)	983, 986, 1047
ApoI	RAATTY	3 cut(s)	287, 296, 782
ArsI	GACNNNNNNTTYG	2 cut(s)	783, 815
Asp700I	GAANNNNTTC	1 cut(s)	354
AspLEI	GCGC	1 cut(s)	562
AspS9I	GGNCC	1 cut(s)	217
AsuHPI	GGTGA	2 cut(s)	530, 791
BbsI	GAAGAC	1 cut(s)	357
BbvI	GCAGC	3 cut(s)	970, 973, 1034
BccI	CCATC	2 cut(s)	307, 629
BciT130I	CCWGG	1 cut(s)	674
BclI	TGATCA	1 cut(s)	534
BcoDI	GTCTC	2 cut(s)	113, 871
BfaI	CTAG	2 cut(s)	819, 896
BfmI	CTRYAG	1 cut(s)	238
BfoI	RGCGCY	1 cut(s)	563
BfrI	CTTAAG	1 cut(s)	359
BisI	GCNGC	3 cut(s)	984, 987, 1048
BlsI	GCNGC	3 cut(s)	985, 988, 1049
BmcAI	AGTACT	1 cut(s)	64
Bme1390I	CCNGG	1 cut(s)	674
BmgT120I	GGNCC	1 cut(s)	217
BmiI	GGNNCC	1 cut(s)	218
BmrFI	CCNGG	1 cut(s)	674
BpiI	GAAGAC	1 cut(s)	357
BpmI	CTGGAG	1 cut(s)	656
BsaAI	YACGTR	1 cut(s)	167
Bse3DI	GCAATG	2 cut(s)	87, 1050
BseBI	CCWGG	1 cut(s)	674
BseGI	GGATG	3 cut(s)	640, 772, 1039
BseMI	GCAATG	2 cut(s)	87, 1050
BseMII	CTCAG	5 cut(s)	108, 243, 555, 845, 866
BseX3I	CGGCCG	1 cut(s)	413
BseXI	GCAGC	3 cut(s)	970, 973, 1034
BsgI	GTGCAG	1 cut(s)	1024
Bsh1285I	CGRYCG	1 cut(s)	416
BshFI	GGCC	3 cut(s)	219, 232, 415
BsiEI	CGRYCG	1 cut(s)	416
BsiSI	CCGG	1 cut(s)	412
BsmAI	GTCTC	2 cut(s)	113, 871
BsnI	GGCC	3 cut(s)	219, 232, 415
Bsp1407I	TGTACA	1 cut(s)	93
Bsp143I	GATC	4 cut(s)	44, 534, 847, 905
BspACI	CCGC	2 cut(s)	330, 851
BspANI	GGCC	3 cut(s)	219, 232, 415
BspCNI	CTCAG	5 cut(s)	109, 244, 554, 846, 867
BspLI	GGNNCC	1 cut(s)	218
BspPI	GGATC	3 cut(s)	52, 842, 913
BspTI	CTTAAG	1 cut(s)	359
BsrDI	GCAATG	2 cut(s)	87, 1050
BsrGI	TGTACA	1 cut(s)	93
BssMI	GATC	4 cut(s)	44, 534, 847, 905
BssNAI	GTATAC	1 cut(s)	498
Bst1107I	GTATAC	1 cut(s)	498
Bst2UI	CCWGG	1 cut(s)	674
Bst4CI	ACNGT	3 cut(s)	67, 581, 1066
BstAFI	CTTAAG	1 cut(s)	359
BstAPI	GCANNNNNTGC	1 cut(s)	323
BstAUI	TGTACA	1 cut(s)	93
BstBAI	YACGTR	1 cut(s)	167
BstC8I	GCNNGC	2 cut(s)	12, 34
BstDEI	CTNAG	6 cut(s)	117, 252, 422, 541, 854, 875
BstF5I	GGATG	3 cut(s)	640, 772, 1039
BstH2I	RGCGCY	1 cut(s)	563
BstHHI	GCGC	1 cut(s)	562
BstKTI	GATC	4 cut(s)	47, 537, 850, 908
BstMAI	GTCTC	2 cut(s)	113, 871
BstMBI	GATC	4 cut(s)	44, 534, 847, 905
BstMCI	CGRYCG	1 cut(s)	416
BstMWI	GCNNNNNNNGC	3 cut(s)	182, 323, 995
BstNI	CCWGG	1 cut(s)	674
BstNSI	RCATGY	2 cut(s)	94, 496
BstSCI	CCNGG	1 cut(s)	672
BstSFI	CTRYAG	1 cut(s)	238
BstV1I	GCAGC	3 cut(s)	970, 973, 1034
BstV2I	GAAGAC	1 cut(s)	357
BstX2I	RGATCY	1 cut(s)	44
BstXI	CCANNNNNNTGG	1 cut(s)	680
BstYI	RGATCY	1 cut(s)	44
BstZ17I	GTATAC	1 cut(s)	498
BstZI	CGGCCG	1 cut(s)	413
BsuRI	GGCC	3 cut(s)	219, 232, 415
BtsCI	GGATG	3 cut(s)	640, 772, 1039
BtsIMutI	CAGTG	2 cut(s)	277, 308
Cac8I	GCNNGC	2 cut(s)	12, 34
CaiI	CAGNNNCTG	1 cut(s)	596
CfoI	GCGC	1 cut(s)	562
Cfr13I	GGNCC	1 cut(s)	217
Csp6I	GTAC	4 cut(s)	63, 94, 434, 842
CviAII	CATG	7 cut(s)	20, 91, 221, 373, 493, 614, 653
CviQI	GTAC	4 cut(s)	63, 94, 434, 842
DdeI	CTNAG	6 cut(s)	117, 252, 422, 541, 854, 875
DpnI	GATC	4 cut(s)	46, 536, 849, 907
DpnII	GATC	4 cut(s)	44, 534, 847, 905
DraI	TTTAAA	1 cut(s)	285
EaeI	YGGCCR	1 cut(s)	413
EagI	CGGCCG	1 cut(s)	413
EclXI	CGGCCG	1 cut(s)	413
Eco47III	AGCGCT	1 cut(s)	561
Eco52I	CGGCCG	1 cut(s)	413
Eco57I	CTGAAG	1 cut(s)	253
EcoRI	GAATTC	1 cut(s)	782
EcoRII	CCWGG	1 cut(s)	672
FaeI	CATG	7 cut(s)	23, 94, 224, 376, 496, 617, 656
FalI	AAGNNNNNCTT	4 cut(s)	342, 374, 381, 413
FatI	CATG	7 cut(s)	19, 90, 220, 372, 492, 613, 652
FauNDI	CATATG	1 cut(s)	463
FbaI	TGATCA	1 cut(s)	534
FblI	GTMKAC	1 cut(s)	497
Fnu4HI	GCNGC	3 cut(s)	984, 987, 1048
FokI	GGATG	3 cut(s)	647, 779, 1046
Fsp4HI	GCNGC	3 cut(s)	984, 987, 1048
FspBI	CTAG	2 cut(s)	819, 896
GlaI	GCGC	1 cut(s)	561
GluI	GCNGC	3 cut(s)	984, 987, 1048
GsuI	CTGGAG	1 cut(s)	656
HaeII	RGCGCY	1 cut(s)	563
HaeIII	GGCC	3 cut(s)	219, 232, 415
HapII	CCGG	1 cut(s)	412
HhaI	GCGC	1 cut(s)	562
Hin1II	CATG	7 cut(s)	23, 94, 224, 376, 496, 617, 656
Hin6I	GCGC	1 cut(s)	560
HinP1I	GCGC	1 cut(s)	560
HincII	GTYRAC	3 cut(s)	718, 739, 860
HindII	GTYRAC	3 cut(s)	718, 739, 860
HinfI	GANTC	2 cut(s)	418, 856
HpaII	CCGG	1 cut(s)	412
HphI	GGTGA	2 cut(s)	530, 791
Hpy166II	GTNNAC	6 cut(s)	498, 553, 718, 739, 791, 860
Hpy188I	TCNGA	7 cut(s)	253, 544, 592, 610, 646, 750, 838
Hpy188III	TCNNGA	2 cut(s)	48, 347
Hpy8I	GTNNAC	6 cut(s)	498, 553, 718, 739, 791, 860
HpyAV	CCTTC	2 cut(s)	696, 973
HpyCH4III	ACNGT	3 cut(s)	67, 581, 1066
HpyCH4IV	ACGT	3 cut(s)	108, 166, 941
HpyCH4V	TGCA	8 cut(s)	185, 199, 603, 886, 953, 998, 1005, 1050
HpyF10VI	GCNNNNNNNGC	3 cut(s)	182, 323, 995
HpyF3I	CTNAG	6 cut(s)	117, 252, 422, 541, 854, 875
HpySE526I	ACGT	3 cut(s)	108, 166, 941
Hsp92II	CATG	7 cut(s)	23, 94, 224, 376, 496, 617, 656
HspAI	GCGC	1 cut(s)	560
Ksp22I	TGATCA	1 cut(s)	534
Kzo9I	GATC	4 cut(s)	44, 534, 847, 905
LmnI	GCTCC	1 cut(s)	706
Lsp1109I	GCAGC	3 cut(s)	970, 973, 1034
MaeI	CTAG	2 cut(s)	819, 896
MaeII	ACGT	3 cut(s)	108, 166, 941
MalI	GATC	4 cut(s)	46, 536, 849, 907
MboI	GATC	4 cut(s)	44, 534, 847, 905
MboII	GAAGA	3 cut(s)	362, 557, 878
MfeI	CAATTG	1 cut(s)	186
MflI	RGATCY	1 cut(s)	44
MlyI	GAGTC	1 cut(s)	865
MmeI	TCCRAC	1 cut(s)	669
MnlI	CCTC	7 cut(s)	80, 503, 586, 625, 799, 807, 832
MroXI	GAANNNNTTC	1 cut(s)	354
MseI	TTAA	8 cut(s)	5, 128, 284, 293, 320, 360, 756, 1111
MspA1I	CMGCKG	1 cut(s)	853
MspCI	CTTAAG	1 cut(s)	359
MspI	CCGG	1 cut(s)	412
MspR9I	CCNGG	1 cut(s)	674
MunI	CAATTG	1 cut(s)	186
MvaI	CCWGG	1 cut(s)	674
MwoI	GCNNNNNNNGC	3 cut(s)	182, 323, 995
NdeI	CATATG	1 cut(s)	463
NdeII	GATC	4 cut(s)	44, 534, 847, 905
NlaIII	CATG	7 cut(s)	23, 94, 224, 376, 496, 617, 656
NlaIV	GGNNCC	1 cut(s)	218
NspI	RCATGY	2 cut(s)	94, 496
PciI	ACATGT	1 cut(s)	492
PdmI	GAANNNNTTC	1 cut(s)	354
PfeI	GAWTC	1 cut(s)	418
PfoI	TCCNGGA	1 cut(s)	672
PkrI	GCNGC	3 cut(s)	985, 988, 1049
PleI	GAGTC	1 cut(s)	864
PpsI	GAGTC	1 cut(s)	864
Ppu21I	YACGTR	1 cut(s)	167
PscI	ACATGT	1 cut(s)	492
Psp1406I	AACGTT	1 cut(s)	941
Psp6I	CCWGG	1 cut(s)	672
PspGI	CCWGG	1 cut(s)	672
PspN4I	GGNNCC	1 cut(s)	218
PspPI	GGNCC	1 cut(s)	217
PstNI	CAGNNNCTG	1 cut(s)	596
PsuI	RGATCY	1 cut(s)	44
RsaI	GTAC	4 cut(s)	64, 95, 435, 843
RsaNI	GTAC	4 cut(s)	63, 94, 434, 842
SaqAI	TTAA	8 cut(s)	5, 128, 284, 293, 320, 360, 756, 1111
SatI	GCNGC	3 cut(s)	984, 987, 1048
Sau3AI	GATC	4 cut(s)	44, 534, 847, 905
Sau96I	GGNCC	1 cut(s)	217
ScaI	AGTACT	1 cut(s)	64
SchI	GAGTC	1 cut(s)	865
ScrFI	CCNGG	1 cut(s)	674
SfcI	CTRYAG	1 cut(s)	238
SmlI	CTYRAG	1 cut(s)	359
SmoI	CTYRAG	1 cut(s)	359
SsiI	CCGC	2 cut(s)	330, 851
SspI	AATATT	1 cut(s)	126
SspMI	CTAG	2 cut(s)	819, 896
StyD4I	CCNGG	1 cut(s)	672
TaaI	ACNGT	3 cut(s)	67, 581, 1066
TaiI	ACGT	3 cut(s)	111, 169, 944
TaqI	TCGA	2 cut(s)	300, 630
TatI	WGTACW	2 cut(s)	62, 93
TfiI	GAWTC	1 cut(s)	418
Tru1I	TTAA	8 cut(s)	5, 128, 284, 293, 320, 360, 756, 1111
Tru9I	TTAA	8 cut(s)	5, 128, 284, 293, 320, 360, 756, 1111
TscAI	CASTG	2 cut(s)	277, 315
TseI	GCWGC	3 cut(s)	983, 986, 1047
TspDTI	ATGAA	5 cut(s)	207, 393, 672, 1063, 1103
TspRI	CASTG	2 cut(s)	277, 315
Vha464I	CTTAAG	1 cut(s)	359
XapI	RAATTY	3 cut(s)	287, 296, 782
XceI	RCATGY	2 cut(s)	94, 496
XmiI	GTMKAC	1 cut(s)	497
XmnI	GAANNNNTTC	1 cut(s)	354
XspI	CTAG	2 cut(s)	819, 896
ZrmI	AGTACT	1 cut(s)	64

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.