Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0016819.1

Orthogroup ID

OG0019029

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 756

Gene Structure 756 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0016819.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 383 bp

ctggaagcggtcgtaggcaacaacaatttgatatctcccccaatttctaagcggaaaatctctgtgcttccagattccagcattgttgacagggaaagtggttgttgtgatttcaccattgataagcttgatgcacgaccagtgcttaaagctggcaaaacatggggtttctgctgctttcttggatctggacaacctgatagaactgtggaaaatcaagcaatgagaggcatgtacaacataatatacgtttgccctgagacaatattaagactgataaaaccactccaaaagttggcagaaataattggaattgctctttttgcaattgatcaagtgcattgtgtttcaaagtggggccatgatttttggcctgactacag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000724 GO:0000725 GO:0003674 GO:0003676 GO:0003677 GO:0003678 GO:0003824 GO:0004003 GO:0004386 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005737 GO:0006139 GO:0006259 GO:0006281 GO:0006302 GO:0006310 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0008026 GO:0008094 GO:0008150 GO:0008152 GO:0009378 GO:0009987 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0032392 GO:0032508 GO:0033554 GO:0034641 GO:0042623 GO:0043138 GO:0043140 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044464 GO:0046483 GO:0050896 GO:0051276 GO:0051716 GO:0070035 GO:0071103 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:0140097 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DEAD Helicase_C RecQ_Zn_bind

Protein Analysis

127

Amino Acids

14.18

Weight (kDa)

6.89

Isoelectric Point (pI)

25.78

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0019029)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr6g0295551
rosa_laevigata	RLG00000009400
rosa_multiflora	Rmu_sc0002935.1_g000010 Rmu_sc0016819.1_g000001 Rmu_sc0031479.1_g000001
rosa_samantha	Rh5BG325300 Rh5BG493900 Rh5DG336100 Rh6CG379700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	295
AciI	CCGC	2 cut(s)	8, 52
AclWI	GGATC	1 cut(s)	193
AfaI	GTAC	1 cut(s)	236
AfiI	CCNNNNNNNGG	1 cut(s)	295
AgsI	TTSAA	1 cut(s)	351
AluBI	AGCT	2 cut(s)	127, 152
AluI	AGCT	2 cut(s)	127, 152
Alw26I	GTCTC	1 cut(s)	254
AlwI	GGATC	1 cut(s)	193
AoxI	GGCC	2 cut(s)	358, 371
ApeKI	GCWGC	1 cut(s)	174
AspS9I	GGNCC	1 cut(s)	358
AsuHPI	GGTGA	1 cut(s)	106
BbvI	GCAGC	1 cut(s)	161
BclI	TGATCA	1 cut(s)	331
BcoDI	GTCTC	1 cut(s)	254
BfmI	CTRYAG	1 cut(s)	379
BisI	GCNGC	1 cut(s)	175
BlsI	GCNGC	1 cut(s)	176
BmgT120I	GGNCC	1 cut(s)	358
BmiI	GGNNCC	1 cut(s)	359
BmsI	GCATC	1 cut(s)	121
Bsc4I	CCNNNNNNNGG	1 cut(s)	295
Bse1I	ACTGG	1 cut(s)	140
Bse3DI	GCAATG	1 cut(s)	228
BseLI	CCNNNNNNNGG	1 cut(s)	295
BseMI	GCAATG	1 cut(s)	228
BseMII	CTCAG	1 cut(s)	249
BseNI	ACTGG	1 cut(s)	140
BseXI	GCAGC	1 cut(s)	161
Bsh1285I	CGRYCG	1 cut(s)	12
BshFI	GGCC	2 cut(s)	360, 373
BsiEI	CGRYCG	1 cut(s)	12
BslI	CCNNNNNNNGG	1 cut(s)	295
BsmAI	GTCTC	1 cut(s)	254
BsnI	GGCC	2 cut(s)	360, 373
Bsp1407I	TGTACA	1 cut(s)	234
Bsp143I	GATC	2 cut(s)	185, 331
BspACI	CCGC	2 cut(s)	8, 52
BspANI	GGCC	2 cut(s)	360, 373
BspCNI	CTCAG	1 cut(s)	250
BspLI	GGNNCC	1 cut(s)	359
BspPI	GGATC	1 cut(s)	193
BsrDI	GCAATG	1 cut(s)	228
BsrGI	TGTACA	1 cut(s)	234
BsrI	ACTGG	1 cut(s)	140
BssMI	GATC	2 cut(s)	185, 331
Bst4CI	ACNGT	1 cut(s)	208
BstAUI	TGTACA	1 cut(s)	234
BstC8I	GCNNGC	1 cut(s)	154
BstDEI	CTNAG	2 cut(s)	48, 258
BstKTI	GATC	2 cut(s)	188, 334
BstMAI	GTCTC	1 cut(s)	254
BstMBI	GATC	2 cut(s)	185, 331
BstMCI	CGRYCG	1 cut(s)	12
BstMWI	GCNNNNNNNGC	1 cut(s)	323
BstNSI	RCATGY	1 cut(s)	235
BstSFI	CTRYAG	1 cut(s)	379
BstV1I	GCAGC	1 cut(s)	161
BstX2I	RGATCY	1 cut(s)	185
BstYI	RGATCY	1 cut(s)	185
BsuRI	GGCC	2 cut(s)	360, 373
BtsIMutI	CAGTG	1 cut(s)	147
Cac8I	GCNNGC	1 cut(s)	154
Cfr13I	GGNCC	1 cut(s)	358
Csp6I	GTAC	1 cut(s)	235
CviAII	CATG	3 cut(s)	162, 232, 362
CviJI	RGCY	4 cut(s)	127, 152, 360, 373
CviKI_1	RGCY	4 cut(s)	127, 152, 360, 373
CviQI	GTAC	1 cut(s)	235
DdeI	CTNAG	2 cut(s)	48, 258
DpnI	GATC	2 cut(s)	187, 333
DpnII	GATC	2 cut(s)	185, 331
Eco32I	GATATC	1 cut(s)	33
EcoRV	GATATC	1 cut(s)	33
FaeI	CATG	3 cut(s)	165, 235, 365
FaiI	YATR	5 cut(s)	163, 233, 242, 247, 363
FatI	CATG	3 cut(s)	161, 231, 361
FbaI	TGATCA	1 cut(s)	331
Fnu4HI	GCNGC	1 cut(s)	175
Fsp4HI	GCNGC	1 cut(s)	175
GluI	GCNGC	1 cut(s)	175
HaeIII	GGCC	2 cut(s)	360, 373
Hin1II	CATG	3 cut(s)	165, 235, 365
HincII	GTYRAC	1 cut(s)	88
HindII	GTYRAC	1 cut(s)	88
HindIII	AAGCTT	1 cut(s)	125
HinfI	GANTC	1 cut(s)	74
HphI	GGTGA	1 cut(s)	106
Hpy166II	GTNNAC	1 cut(s)	88
Hpy188III	TCNNGA	2 cut(s)	71, 189
Hpy8I	GTNNAC	1 cut(s)	88
HpyCH4III	ACNGT	1 cut(s)	208
HpyCH4IV	ACGT	1 cut(s)	249
HpyCH4V	TGCA	3 cut(s)	134, 326, 340
HpyF10VI	GCNNNNNNNGC	1 cut(s)	323
HpyF3I	CTNAG	2 cut(s)	48, 258
HpySE526I	ACGT	1 cut(s)	249
Hsp92II	CATG	3 cut(s)	165, 235, 365
Ksp22I	TGATCA	1 cut(s)	331
Kzo9I	GATC	2 cut(s)	185, 331
LpnPI	CCDG	8 cut(s)	76, 84, 91, 138, 153, 174, 210, 270
Lsp1109I	GCAGC	1 cut(s)	161
LweI	GCATC	1 cut(s)	121
MaeII	ACGT	1 cut(s)	249
MalI	GATC	2 cut(s)	187, 333
MboI	GATC	2 cut(s)	185, 331
MfeI	CAATTG	1 cut(s)	327
MflI	RGATCY	1 cut(s)	185
MluCI	AATT	5 cut(s)	25, 42, 306, 312, 327
MnlI	CCTC	1 cut(s)	221
MseI	TTAA	2 cut(s)	147, 269
MunI	CAATTG	1 cut(s)	327
MwoI	GCNNNNNNNGC	1 cut(s)	323
NdeII	GATC	2 cut(s)	185, 331
NlaIII	CATG	3 cut(s)	165, 235, 365
NlaIV	GGNNCC	1 cut(s)	359
NspI	RCATGY	1 cut(s)	235
PfeI	GAWTC	1 cut(s)	74
PflMI	CCANNNNNTGG	1 cut(s)	295
PkrI	GCNGC	1 cut(s)	176
PspN4I	GGNNCC	1 cut(s)	359
PspPI	GGNCC	1 cut(s)	358
PsuI	RGATCY	1 cut(s)	185
RsaI	GTAC	1 cut(s)	236
RsaNI	GTAC	1 cut(s)	235
SaqAI	TTAA	2 cut(s)	147, 269
SatI	GCNGC	1 cut(s)	175
Sau3AI	GATC	2 cut(s)	185, 331
Sau96I	GGNCC	1 cut(s)	358
SetI	ASST	4 cut(s)	129, 154, 199, 252
SfaNI	GCATC	1 cut(s)	121
SfcI	CTRYAG	1 cut(s)	379
Sse9I	AATT	5 cut(s)	25, 42, 306, 312, 327
SsiI	CCGC	2 cut(s)	8, 52
SspI	AATATT	1 cut(s)	267
TaaI	ACNGT	1 cut(s)	208
TaiI	ACGT	1 cut(s)	252
TasI	AATT	5 cut(s)	25, 42, 306, 312, 327
TatI	WGTACW	1 cut(s)	234
TfiI	GAWTC	1 cut(s)	74
Tru1I	TTAA	2 cut(s)	147, 269
Tru9I	TTAA	2 cut(s)	147, 269
TscAI	CASTG	1 cut(s)	147
TseI	GCWGC	1 cut(s)	174
TspRI	CASTG	1 cut(s)	147
Van91I	CCANNNNNTGG	1 cut(s)	295
XceI	RCATGY	1 cut(s)	235

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.