Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0019029

Physical Location & Seq

Genomic Coordinates Reverse (-)

45127118 .. 45129667

Gene Structure 2550 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG336100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 939 bp

ATGAGAGGCATGTACAACATAATATACGTTTGCCCTGAGACAATATTAAGACTGATAAAACCACGCCAAAAGTTGGCAGAATTACGTGGATTTGCTCTTTTTGCAATTGATGAAGTGCATTGTGTTTCAAAGTGGGGCCATGATTTTTGGCCTGACTACAGGAGATTGTCTGAGTTGCGAAAGAACTTCAGTGCTAGCAATTTAAAATTCTTAAAATTCGATATACCACTGATGGCATTAACTGCTACTGCCACAATTCAGGTACAGCATAGTAGAACATCAACATCATCATATGAGAATGATTTTTATGACTTGATAGACATGAATACGGGCAAGAGAGGAAAAGGTGAAAAGAAACAAATGGTCATCTCAGAAGAAGTAAACGAAGCGGTGGACAGCTCATCTAACAGTAGTATGTCAGAGGCTGATTGCATTTCAGAGCATGATTTAGACAATATCGAGGATGGTAATTCCAACAGATATGATGAAGCAAGTTCACTCCAGGAAAATGGTTCAAGTGCTTCAAAGGGAAGGTCAGTTGACTACTTGGAAAATGATGTTGACATCTTTCAGAGTGTTAATGATTGGGATGTTAGCTGTGGTGAAATCTGTGGACTACCTCTTTGTGAGGACTTGACTACTAGAAAAGAAACTACATTGGAGGTACTTGATCTGCCGAGACAACCAGAAGCAAGACTGAGACTTCTGCAACAGCCTCTAAATAAGGGATCAACTATCATATATGTTCCTACGAGAAAACAAACGTTGAAAATTTCAACTTACCTTTCCAAGTGTGGAGTGAAGGCTGCTGCCTATAATGCAGGGTTGCCAAAATCACGTCTGAGGCAGGTCCACAAGATGTTTCATGAAAATACATTAGAGGTTGTTGTGGCAGATGCAAAGAAAGCTAACCTGGAGGGATCCACTTTGAAGTACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000724 GO:0000725 GO:0003674 GO:0003676 GO:0003677 GO:0003678 GO:0003824 GO:0004003 GO:0004386 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005737 GO:0006139 GO:0006259 GO:0006281 GO:0006302 GO:0006310 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0008026 GO:0008094 GO:0008150 GO:0008152 GO:0009378 GO:0009987 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0032392 GO:0032508 GO:0033554 GO:0034641 GO:0042623 GO:0043138 GO:0043140 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044464 GO:0046483 GO:0050896 GO:0051276 GO:0051716 GO:0070035 GO:0071103 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:0140097 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DEAD Helicase_C RecQ_Zn_bind

Protein Analysis

312

Amino Acids

35.25

Weight (kDa)

5.95

Isoelectric Point (pI)

42.96

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DEAD	PF00270	5 - 87	6.9e-06	DEAD/DEAH box helicase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0019029)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr6g0295551
rosa_laevigata	RLG00000009400
rosa_multiflora	Rmu_sc0002935.1_g000010 Rmu_sc0016819.1_g000001 Rmu_sc0031479.1_g000001
rosa_samantha	Rh5BG325300 Rh5BG493900 Rh5DG336100 Rh6CG379700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	838
AccB7I	CCANNNNNTGG	1 cut(s)	73
AciI	CCGC	1 cut(s)	389
AclI	AACGTT	1 cut(s)	764
AclWI	GGATC	3 cut(s)	736, 915, 928
AcsI	RAATTY	3 cut(s)	206, 215, 771
AcuI	CTGAAG	1 cut(s)	172
AfaI	GTAC	4 cut(s)	14, 264, 666, 935
AfiI	CCNNNNNNNGG	1 cut(s)	73
AgsI	TTSAA	6 cut(s)	129, 516, 525, 769, 777, 931
AjiI	CACGTC	1 cut(s)	839
AjnI	CCWGG	2 cut(s)	501, 912
AluBI	AGCT	3 cut(s)	399, 597, 908
AluI	AGCT	3 cut(s)	399, 597, 908
Alw26I	GTCTC	3 cut(s)	32, 673, 694
AlwI	GGATC	3 cut(s)	736, 915, 928
AlwNI	CAGNNNCTG	1 cut(s)	425
AoxI	GGCC	2 cut(s)	136, 149
ApeKI	GCWGC	2 cut(s)	806, 809
ApoI	RAATTY	3 cut(s)	206, 215, 771
ArsI	GACNNNNNNTTYG	4 cut(s)	518, 550, 606, 638
AspS9I	GGNCC	2 cut(s)	136, 850
AsuHPI	GGTGA	2 cut(s)	359, 614
AsuNHI	GCTAGC	1 cut(s)	194
AvaII	GGWCC	1 cut(s)	850
BamHI	GGATCC	1 cut(s)	920
BbvI	GCAGC	2 cut(s)	793, 796
BccI	CCATC	2 cut(s)	226, 458
BciT130I	CCWGG	2 cut(s)	503, 914
BcoDI	GTCTC	3 cut(s)	32, 673, 694
BfaI	CTAG	2 cut(s)	195, 642
BfmI	CTRYAG	1 cut(s)	157
BfuAI	ACCTGC	1 cut(s)	838
BisI	GCNGC	2 cut(s)	807, 810
BlsI	GCNGC	2 cut(s)	808, 811
BmcAI	AGTACT	1 cut(s)	935
Bme1390I	CCNGG	2 cut(s)	503, 914
Bme18I	GGWCC	1 cut(s)	850
BmgBI	CACGTC	1 cut(s)	839
BmgT120I	GGNCC	2 cut(s)	136, 850
BmiI	GGNNCC	2 cut(s)	137, 922
BmrFI	CCNGG	2 cut(s)	503, 914
BmsI	GCATC	1 cut(s)	886
BmtI	GCTAGC	1 cut(s)	198
BpmI	CTGGAG	2 cut(s)	485, 935
BsaAI	YACGTR	1 cut(s)	86
Bsc4I	CCNNNNNNNGG	1 cut(s)	73
BseBI	CCWGG	2 cut(s)	503, 914
BseGI	GGATG	2 cut(s)	469, 595
BseLI	CCNNNNNNNGG	1 cut(s)	73
BseMII	CTCAG	5 cut(s)	27, 162, 384, 689, 833
BseXI	GCAGC	2 cut(s)	793, 796
BshFI	GGCC	2 cut(s)	138, 151
BslI	CCNNNNNNNGG	1 cut(s)	73
BsmAI	GTCTC	3 cut(s)	32, 673, 694
BsnI	GGCC	2 cut(s)	138, 151
Bsp1407I	TGTACA	1 cut(s)	12
Bsp143I	GATC	3 cut(s)	670, 728, 920
BspACI	CCGC	1 cut(s)	389
BspANI	GGCC	2 cut(s)	138, 151
BspCNI	CTCAG	5 cut(s)	28, 163, 383, 690, 834
BspHI	TCATGA	1 cut(s)	865
BspLI	GGNNCC	2 cut(s)	137, 922
BspMI	ACCTGC	1 cut(s)	838
BspOI	GCTAGC	1 cut(s)	198
BspPI	GGATC	3 cut(s)	736, 915, 928
BsrGI	TGTACA	1 cut(s)	12
BssMI	GATC	3 cut(s)	670, 728, 920
Bst2UI	CCWGG	2 cut(s)	503, 914
Bst4CI	ACNGT	1 cut(s)	410
BstAPI	GCANNNNNTGC	1 cut(s)	242
BstAUI	TGTACA	1 cut(s)	12
BstBAI	YACGTR	1 cut(s)	86
BstC8I	GCNNGC	1 cut(s)	196
BstDEI	CTNAG	5 cut(s)	36, 171, 370, 698, 842
BstF5I	GGATG	2 cut(s)	469, 595
BstKTI	GATC	3 cut(s)	673, 731, 923
BstMAI	GTCTC	3 cut(s)	32, 673, 694
BstMBI	GATC	3 cut(s)	670, 728, 920
BstMWI	GCNNNNNNNGC	4 cut(s)	101, 242, 818, 905
BstNI	CCWGG	2 cut(s)	503, 914
BstNSI	RCATGY	1 cut(s)	13
BstSCI	CCNGG	2 cut(s)	501, 912
BstSFI	CTRYAG	1 cut(s)	157
BstV1I	GCAGC	2 cut(s)	793, 796
BstX2I	RGATCY	1 cut(s)	920
BstXI	CCANNNNNNTGG	1 cut(s)	509
BstYI	RGATCY	1 cut(s)	920
BsuRI	GGCC	2 cut(s)	138, 151
BtrI	CACGTC	1 cut(s)	839
BtsCI	GGATG	2 cut(s)	469, 595
BtsIMutI	CAGTG	2 cut(s)	196, 227
BveI	ACCTGC	1 cut(s)	838
Cac8I	GCNNGC	1 cut(s)	196
CaiI	CAGNNNCTG	1 cut(s)	425
CciI	TCATGA	1 cut(s)	865
Cfr13I	GGNCC	2 cut(s)	136, 850
Csp6I	GTAC	4 cut(s)	13, 263, 665, 934
CviAII	CATG	5 cut(s)	10, 140, 322, 443, 866
CviJI	RGCY	8 cut(s)	138, 151, 399, 425, 597, 715, 806, 908
CviKI_1	RGCY	8 cut(s)	138, 151, 399, 425, 597, 715, 806, 908
CviQI	GTAC	4 cut(s)	13, 263, 665, 934
DdeI	CTNAG	5 cut(s)	36, 171, 370, 698, 842
DpnI	GATC	3 cut(s)	672, 730, 922
DpnII	GATC	3 cut(s)	670, 728, 920
DraI	TTTAAA	1 cut(s)	204
Eco47I	GGWCC	1 cut(s)	850
Eco57I	CTGAAG	1 cut(s)	172
EcoRII	CCWGG	2 cut(s)	501, 912
FaeI	CATG	5 cut(s)	13, 143, 325, 446, 869
FatI	CATG	5 cut(s)	9, 139, 321, 442, 865
FauNDI	CATATG	1 cut(s)	292
Fnu4HI	GCNGC	2 cut(s)	807, 810
FokI	GGATG	2 cut(s)	476, 602
Fsp4HI	GCNGC	2 cut(s)	807, 810
FspBI	CTAG	2 cut(s)	195, 642
GluI	GCNGC	2 cut(s)	807, 810
GsuI	CTGGAG	2 cut(s)	485, 935
HaeIII	GGCC	2 cut(s)	138, 151
Hin1II	CATG	5 cut(s)	13, 143, 325, 446, 869
HincII	GTYRAC	2 cut(s)	541, 562
HindII	GTYRAC	2 cut(s)	541, 562
HphI	GGTGA	2 cut(s)	359, 614
Hpy166II	GTNNAC	7 cut(s)	382, 394, 497, 541, 562, 614, 853
Hpy188I	TCNGA	6 cut(s)	172, 373, 421, 439, 573, 843
Hpy188III	TCNNGA	1 cut(s)	866
Hpy8I	GTNNAC	7 cut(s)	382, 394, 497, 541, 562, 614, 853
HpyAV	CCTTC	2 cut(s)	525, 796
HpyCH4III	ACNGT	1 cut(s)	410
HpyCH4IV	ACGT	4 cut(s)	27, 85, 764, 838
HpyCH4V	TGCA	6 cut(s)	104, 118, 432, 709, 821, 899
HpyF10VI	GCNNNNNNNGC	4 cut(s)	101, 242, 818, 905
HpyF3I	CTNAG	5 cut(s)	36, 171, 370, 698, 842
HpySE526I	ACGT	4 cut(s)	27, 85, 764, 838
Hsp92II	CATG	5 cut(s)	13, 143, 325, 446, 869
Kzo9I	GATC	3 cut(s)	670, 728, 920
Lsp1109I	GCAGC	2 cut(s)	793, 796
LweI	GCATC	1 cut(s)	886
MaeI	CTAG	2 cut(s)	195, 642
MaeII	ACGT	4 cut(s)	27, 85, 764, 838
MalI	GATC	3 cut(s)	672, 730, 922
MboI	GATC	3 cut(s)	670, 728, 920
MboII	GAAGA	1 cut(s)	386
MfeI	CAATTG	1 cut(s)	105
MflI	RGATCY	1 cut(s)	920
MluCI	AATT	8 cut(s)	80, 105, 199, 206, 215, 255, 469, 771
MmeI	TCCRAC	1 cut(s)	498
MseI	TTAA	5 cut(s)	47, 203, 212, 239, 579
MspR9I	CCNGG	2 cut(s)	503, 914
MunI	CAATTG	1 cut(s)	105
MvaI	CCWGG	2 cut(s)	503, 914
MwoI	GCNNNNNNNGC	4 cut(s)	101, 242, 818, 905
NdeI	CATATG	1 cut(s)	292
NdeII	GATC	3 cut(s)	670, 728, 920
NheI	GCTAGC	1 cut(s)	194
NlaIII	CATG	5 cut(s)	13, 143, 325, 446, 869
NlaIV	GGNNCC	2 cut(s)	137, 922
NmeAIII	GCCGAG	1 cut(s)	702
NspI	RCATGY	1 cut(s)	13
PagI	TCATGA	1 cut(s)	865
PflMI	CCANNNNNTGG	1 cut(s)	73
PfoI	TCCNGGA	1 cut(s)	501
PkrI	GCNGC	2 cut(s)	808, 811
Ppu21I	YACGTR	1 cut(s)	86
Psp1406I	AACGTT	1 cut(s)	764
Psp6I	CCWGG	2 cut(s)	501, 912
PspGI	CCWGG	2 cut(s)	501, 912
PspN4I	GGNNCC	2 cut(s)	137, 922
PspPI	GGNCC	2 cut(s)	136, 850
PstNI	CAGNNNCTG	1 cut(s)	425
PsuI	RGATCY	1 cut(s)	920
RsaI	GTAC	4 cut(s)	14, 264, 666, 935
RsaNI	GTAC	4 cut(s)	13, 263, 665, 934
SaqAI	TTAA	5 cut(s)	47, 203, 212, 239, 579
SatI	GCNGC	2 cut(s)	807, 810
Sau3AI	GATC	3 cut(s)	670, 728, 920
Sau96I	GGNCC	2 cut(s)	136, 850
ScaI	AGTACT	1 cut(s)	935
ScrFI	CCNGG	2 cut(s)	503, 914
SfaNI	GCATC	1 cut(s)	886
SfcI	CTRYAG	1 cut(s)	157
SinI	GGWCC	1 cut(s)	850
Sse9I	AATT	8 cut(s)	80, 105, 199, 206, 215, 255, 469, 771
SsiI	CCGC	1 cut(s)	389
SspI	AATATT	1 cut(s)	45
SspMI	CTAG	2 cut(s)	195, 642
StyD4I	CCNGG	2 cut(s)	501, 912
TaaI	ACNGT	1 cut(s)	410
TaiI	ACGT	4 cut(s)	30, 88, 767, 841
TaqI	TCGA	2 cut(s)	219, 459
TasI	AATT	8 cut(s)	80, 105, 199, 206, 215, 255, 469, 771
TatI	WGTACW	2 cut(s)	12, 933
Tru1I	TTAA	5 cut(s)	47, 203, 212, 239, 579
Tru9I	TTAA	5 cut(s)	47, 203, 212, 239, 579
TscAI	CASTG	2 cut(s)	196, 234
TseI	GCWGC	2 cut(s)	806, 809
TspDTI	ATGAA	5 cut(s)	126, 338, 501, 854, 882
TspRI	CASTG	2 cut(s)	196, 234
Van91I	CCANNNNNTGG	1 cut(s)	73
VpaK11BI	GGWCC	1 cut(s)	850
XapI	RAATTY	3 cut(s)	206, 215, 771
XceI	RCATGY	1 cut(s)	13
XspI	CTAG	2 cut(s)	195, 642
ZrmI	AGTACT	1 cut(s)	935

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.