Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6C

Orthogroup ID

OG0019029

Physical Location & Seq

Genomic Coordinates Forward (+)

56622701 .. 56628418

Gene Structure 5718 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6CG379700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 999 bp

ATGAGAGGCATGTACAACATAATATACGTTTGCCCTGAGACAATATTAAGACTGATAAAACCACTCCAAAAGTTGGCAGAATTACGTGGAATTGCTCTTTTTGCAATTGATGAAGTGCATTGTGTTTCAAAGTGGGGCCATGATTTTTGGCCTGACTACAGGAGATTGTCTGAGTTGCGAAAGAACTTCAGTGCTAGCAATTTAAAATTCTTAAAATTCGATATACCACTGATGGCATTAACTGCTACTGCCACAATTCAGGTTCGTGAAGACATTCTTAAGTCATTGTCCATGTCAAAGGAAGCAAAAGTTGTGCTTACATCATTTTTCCGGCCAAATCTAAGGTTCAGGGTACAGCATAGTAGAACATCAACATCATCATATGAGAATGATTTTTATGACTTGATAGACATGTATACGGGCAAGAGAGGAAAAGGTGAAAAGAAACAAATGGTCATCTCAGAAGAAGTAAACGAAGCGCTGGACAGCTCATCTAACAGTAGTATGTCAGAGGCTGATTGCATTTCAGAGCATGATTTAGACAATATCGAGGATGGTAATTCCAACAGATATGATGAAGCAAGTTCACTCCAGGAAAATGGTTCAAGTGCTTCAAAGGGAAGGGAGCTGTCAGTTGACTACTTGGAAAATGATGTTGACATCTTTCAGAGTGTTAATGATTGGGATGTTAGCTGTGGTGAAATCTGTGGACTACCTCTTTGTGAGGACTTGACTACTAGAAAAGAAACTACATTGGAGGTACTTGATCTGCCGAGACAACCAGAAGCAAGACTGAGACTTCTGCAACAGCCTCTAAATAAGGGATCAACTATCATATATGTTCCTACGAGAAAACAAACGTTGAAAATTTCAACTTACCTTTCCAAGTGTGGAGTGAAGGCTGCTGCCTATAATGCAGGGGTATGCCTTGCAGATTGTTTCTGTTCTTTCTTACAGTCTAGTATAGGGTTCTCTCAATCTTTCTGCCTACTAAACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000724 GO:0000725 GO:0003674 GO:0003676 GO:0003677 GO:0003678 GO:0003824 GO:0004003 GO:0004386 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005737 GO:0006139 GO:0006259 GO:0006281 GO:0006302 GO:0006310 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0008026 GO:0008094 GO:0008150 GO:0008152 GO:0009378 GO:0009987 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0032392 GO:0032508 GO:0033554 GO:0034641 GO:0042623 GO:0043138 GO:0043140 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044464 GO:0046483 GO:0050896 GO:0051276 GO:0051716 GO:0070035 GO:0071103 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:0140097 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DEAD Helicase_C RecQ_Zn_bind

Protein Analysis

332

Amino Acids

37.51

Weight (kDa)

5.45

Isoelectric Point (pI)

47.0

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DEAD	PF00270	5 - 89	7.5e-06	DEAD/DEAH box helicase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0019029)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr6g0295551
rosa_laevigata	RLG00000009400
rosa_multiflora	Rmu_sc0002935.1_g000010 Rmu_sc0016819.1_g000001 Rmu_sc0031479.1_g000001
rosa_samantha	Rh5BG325300 Rh5BG493900 Rh5DG336100 Rh6CG379700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	73
AccI	GTMKAC	1 cut(s)	416
AclI	AACGTT	1 cut(s)	860
AclWI	GGATC	1 cut(s)	832
AcoI	YGGCCR	1 cut(s)	332
AcsI	RAATTY	3 cut(s)	206, 215, 867
AcuI	CTGAAG	1 cut(s)	172
AfaI	GTAC	3 cut(s)	14, 354, 762
AfeI	AGCGCT	1 cut(s)	480
AfiI	CCNNNNNNNGG	1 cut(s)	73
AflII	CTTAAG	1 cut(s)	278
AflIII	ACRYGT	1 cut(s)	411
AgsI	TTSAA	5 cut(s)	129, 606, 615, 865, 873
AjnI	CCWGG	1 cut(s)	591
AluBI	AGCT	3 cut(s)	489, 628, 693
AluI	AGCT	3 cut(s)	489, 628, 693
Alw26I	GTCTC	3 cut(s)	32, 769, 790
AlwI	GGATC	1 cut(s)	832
AlwNI	CAGNNNCTG	1 cut(s)	515
Aor51HI	AGCGCT	1 cut(s)	480
AoxI	GGCC	3 cut(s)	136, 149, 332
ApeKI	GCWGC	2 cut(s)	902, 905
ApoI	RAATTY	3 cut(s)	206, 215, 867
ArsI	GACNNNNNNTTYG	2 cut(s)	702, 734
Asp700I	GAANNNNTTC	1 cut(s)	273
AspLEI	GCGC	1 cut(s)	481
AspS9I	GGNCC	1 cut(s)	136
AsuHPI	GGTGA	2 cut(s)	449, 710
AsuNHI	GCTAGC	1 cut(s)	194
BbsI	GAAGAC	1 cut(s)	276
BbvI	GCAGC	2 cut(s)	889, 892
BccI	CCATC	2 cut(s)	226, 548
BciT130I	CCWGG	1 cut(s)	593
BcoDI	GTCTC	3 cut(s)	32, 769, 790
BfaI	CTAG	3 cut(s)	195, 738, 960
BfmI	CTRYAG	1 cut(s)	157
BfoI	RGCGCY	1 cut(s)	482
BfrI	CTTAAG	1 cut(s)	278
BisI	GCNGC	2 cut(s)	903, 906
BlsI	GCNGC	2 cut(s)	904, 907
Bme1390I	CCNGG	1 cut(s)	593
BmgT120I	GGNCC	1 cut(s)	136
BmiI	GGNNCC	1 cut(s)	137
BmrFI	CCNGG	1 cut(s)	593
BmtI	GCTAGC	1 cut(s)	198
BpiI	GAAGAC	1 cut(s)	276
BpmI	CTGGAG	1 cut(s)	575
BsaAI	YACGTR	1 cut(s)	86
Bsc4I	CCNNNNNNNGG	1 cut(s)	73
BseBI	CCWGG	1 cut(s)	593
BseGI	GGATG	2 cut(s)	559, 691
BseLI	CCNNNNNNNGG	1 cut(s)	73
BseMII	CTCAG	4 cut(s)	27, 162, 474, 785
BseXI	GCAGC	2 cut(s)	889, 892
BshFI	GGCC	3 cut(s)	138, 151, 334
BsiSI	CCGG	1 cut(s)	331
BslI	CCNNNNNNNGG	1 cut(s)	73
BsmAI	GTCTC	3 cut(s)	32, 769, 790
BsnI	GGCC	3 cut(s)	138, 151, 334
Bsp1407I	TGTACA	1 cut(s)	12
Bsp143I	GATC	2 cut(s)	766, 824
BspANI	GGCC	3 cut(s)	138, 151, 334
BspCNI	CTCAG	4 cut(s)	28, 163, 473, 786
BspLI	GGNNCC	1 cut(s)	137
BspOI	GCTAGC	1 cut(s)	198
BspPI	GGATC	1 cut(s)	832
BspTI	CTTAAG	1 cut(s)	278
BsrGI	TGTACA	1 cut(s)	12
BssMI	GATC	2 cut(s)	766, 824
BssNAI	GTATAC	1 cut(s)	417
Bst1107I	GTATAC	1 cut(s)	417
Bst2UI	CCWGG	1 cut(s)	593
Bst4CI	ACNGT	2 cut(s)	500, 957
BstAFI	CTTAAG	1 cut(s)	278
BstAPI	GCANNNNNTGC	1 cut(s)	242
BstAUI	TGTACA	1 cut(s)	12
BstBAI	YACGTR	1 cut(s)	86
BstC8I	GCNNGC	1 cut(s)	196
BstDEI	CTNAG	5 cut(s)	36, 171, 341, 460, 794
BstF5I	GGATG	2 cut(s)	559, 691
BstH2I	RGCGCY	1 cut(s)	482
BstHHI	GCGC	1 cut(s)	481
BstKTI	GATC	2 cut(s)	769, 827
BstMAI	GTCTC	3 cut(s)	32, 769, 790
BstMBI	GATC	2 cut(s)	766, 824
BstMWI	GCNNNNNNNGC	3 cut(s)	101, 242, 914
BstNI	CCWGG	1 cut(s)	593
BstNSI	RCATGY	2 cut(s)	13, 415
BstSCI	CCNGG	1 cut(s)	591
BstSFI	CTRYAG	1 cut(s)	157
BstV1I	GCAGC	2 cut(s)	889, 892
BstV2I	GAAGAC	1 cut(s)	276
BstXI	CCANNNNNNTGG	1 cut(s)	599
BstZ17I	GTATAC	1 cut(s)	417
BsuRI	GGCC	3 cut(s)	138, 151, 334
BtsCI	GGATG	2 cut(s)	559, 691
BtsIMutI	CAGTG	2 cut(s)	196, 227
Cac8I	GCNNGC	1 cut(s)	196
CaiI	CAGNNNCTG	1 cut(s)	515
CfoI	GCGC	1 cut(s)	481
Cfr13I	GGNCC	1 cut(s)	136
Csp6I	GTAC	3 cut(s)	13, 353, 761
CviAII	CATG	5 cut(s)	10, 140, 292, 412, 533
CviJI	RGCY	9 cut(s)	138, 151, 334, 489, 515, 628, 693, 811, 902
CviKI_1	RGCY	9 cut(s)	138, 151, 334, 489, 515, 628, 693, 811, 902
CviQI	GTAC	3 cut(s)	13, 353, 761
DdeI	CTNAG	5 cut(s)	36, 171, 341, 460, 794
DpnI	GATC	2 cut(s)	768, 826
DpnII	GATC	2 cut(s)	766, 824
DraI	TTTAAA	1 cut(s)	204
EaeI	YGGCCR	1 cut(s)	332
Eco47III	AGCGCT	1 cut(s)	480
Eco57I	CTGAAG	1 cut(s)	172
EcoRII	CCWGG	1 cut(s)	591
FaeI	CATG	5 cut(s)	13, 143, 295, 415, 536
FalI	AAGNNNNNCTT	4 cut(s)	261, 293, 300, 332
FatI	CATG	5 cut(s)	9, 139, 291, 411, 532
FauNDI	CATATG	1 cut(s)	382
FblI	GTMKAC	1 cut(s)	416
Fnu4HI	GCNGC	2 cut(s)	903, 906
FokI	GGATG	2 cut(s)	566, 698
Fsp4HI	GCNGC	2 cut(s)	903, 906
FspBI	CTAG	3 cut(s)	195, 738, 960
GlaI	GCGC	1 cut(s)	480
GluI	GCNGC	2 cut(s)	903, 906
GsuI	CTGGAG	1 cut(s)	575
HaeII	RGCGCY	1 cut(s)	482
HaeIII	GGCC	3 cut(s)	138, 151, 334
HapII	CCGG	1 cut(s)	331
HhaI	GCGC	1 cut(s)	481
Hin1II	CATG	5 cut(s)	13, 143, 295, 415, 536
Hin6I	GCGC	1 cut(s)	479
HinP1I	GCGC	1 cut(s)	479
HincII	GTYRAC	2 cut(s)	637, 658
HindII	GTYRAC	2 cut(s)	637, 658
HpaII	CCGG	1 cut(s)	331
HphI	GGTGA	2 cut(s)	449, 710
Hpy166II	GTNNAC	6 cut(s)	417, 472, 587, 637, 658, 710
Hpy188I	TCNGA	5 cut(s)	172, 463, 511, 529, 669
Hpy188III	TCNNGA	1 cut(s)	266
Hpy8I	GTNNAC	6 cut(s)	417, 472, 587, 637, 658, 710
HpyAV	CCTTC	2 cut(s)	615, 892
HpyCH4III	ACNGT	2 cut(s)	500, 957
HpyCH4IV	ACGT	3 cut(s)	27, 85, 860
HpyCH4V	TGCA	6 cut(s)	104, 118, 522, 805, 917, 932
HpyF10VI	GCNNNNNNNGC	3 cut(s)	101, 242, 914
HpyF3I	CTNAG	5 cut(s)	36, 171, 341, 460, 794
HpySE526I	ACGT	3 cut(s)	27, 85, 860
Hsp92II	CATG	5 cut(s)	13, 143, 295, 415, 536
HspAI	GCGC	1 cut(s)	479
Kzo9I	GATC	2 cut(s)	766, 824
LmnI	GCTCC	1 cut(s)	625
Lsp1109I	GCAGC	2 cut(s)	889, 892
MaeI	CTAG	3 cut(s)	195, 738, 960
MaeII	ACGT	3 cut(s)	27, 85, 860
MalI	GATC	2 cut(s)	768, 826
MboI	GATC	2 cut(s)	766, 824
MboII	GAAGA	2 cut(s)	281, 476
MfeI	CAATTG	1 cut(s)	105
MluCI	AATT	9 cut(s)	80, 90, 105, 199, 206, 215, 255, 559, 867
MmeI	TCCRAC	1 cut(s)	588
MnlI	CCTC	7 cut(s)	422, 505, 544, 718, 726, 751, 822
MroXI	GAANNNNTTC	1 cut(s)	273
MseI	TTAA	6 cut(s)	47, 203, 212, 239, 279, 675
MspCI	CTTAAG	1 cut(s)	278
MspI	CCGG	1 cut(s)	331
MspR9I	CCNGG	1 cut(s)	593
MunI	CAATTG	1 cut(s)	105
MvaI	CCWGG	1 cut(s)	593
MwoI	GCNNNNNNNGC	3 cut(s)	101, 242, 914
NdeI	CATATG	1 cut(s)	382
NdeII	GATC	2 cut(s)	766, 824
NheI	GCTAGC	1 cut(s)	194
NlaIII	CATG	5 cut(s)	13, 143, 295, 415, 536
NlaIV	GGNNCC	1 cut(s)	137
NmeAIII	GCCGAG	1 cut(s)	798
NspI	RCATGY	2 cut(s)	13, 415
PciI	ACATGT	1 cut(s)	411
PdmI	GAANNNNTTC	1 cut(s)	273
PflMI	CCANNNNNTGG	1 cut(s)	73
PfoI	TCCNGGA	1 cut(s)	591
PkrI	GCNGC	2 cut(s)	904, 907
Ppu21I	YACGTR	1 cut(s)	86
PscI	ACATGT	1 cut(s)	411
Psp1406I	AACGTT	1 cut(s)	860
Psp6I	CCWGG	1 cut(s)	591
PspGI	CCWGG	1 cut(s)	591
PspN4I	GGNNCC	1 cut(s)	137
PspPI	GGNCC	1 cut(s)	136
PstNI	CAGNNNCTG	1 cut(s)	515
RsaI	GTAC	3 cut(s)	14, 354, 762
RsaNI	GTAC	3 cut(s)	13, 353, 761
SaqAI	TTAA	6 cut(s)	47, 203, 212, 239, 279, 675
SatI	GCNGC	2 cut(s)	903, 906
Sau3AI	GATC	2 cut(s)	766, 824
Sau96I	GGNCC	1 cut(s)	136
ScrFI	CCNGG	1 cut(s)	593
SfcI	CTRYAG	1 cut(s)	157
SmlI	CTYRAG	1 cut(s)	278
SmoI	CTYRAG	1 cut(s)	278
Sse9I	AATT	9 cut(s)	80, 90, 105, 199, 206, 215, 255, 559, 867
SspI	AATATT	1 cut(s)	45
SspMI	CTAG	3 cut(s)	195, 738, 960
StyD4I	CCNGG	1 cut(s)	591
TaaI	ACNGT	2 cut(s)	500, 957
TaiI	ACGT	3 cut(s)	30, 88, 863
TaqI	TCGA	2 cut(s)	219, 549
TasI	AATT	9 cut(s)	80, 90, 105, 199, 206, 215, 255, 559, 867
TatI	WGTACW	1 cut(s)	12
Tru1I	TTAA	6 cut(s)	47, 203, 212, 239, 279, 675
Tru9I	TTAA	6 cut(s)	47, 203, 212, 239, 279, 675
TscAI	CASTG	2 cut(s)	196, 234
TseI	GCWGC	2 cut(s)	902, 905
TspDTI	ATGAA	2 cut(s)	126, 591
TspRI	CASTG	2 cut(s)	196, 234
Van91I	CCANNNNNTGG	1 cut(s)	73
Vha464I	CTTAAG	1 cut(s)	278
XapI	RAATTY	3 cut(s)	206, 215, 867
XceI	RCATGY	2 cut(s)	13, 415
XmiI	GTMKAC	1 cut(s)	416
XmnI	GAANNNNTTC	1 cut(s)	273
XspI	CTAG	3 cut(s)	195, 738, 960

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.