Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0019029

Physical Location & Seq

Genomic Coordinates Reverse (-)

44358108 .. 44380661

Gene Structure 22554 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG325300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 885 bp

ATGATCCCCCCGCCACTTCACTCCTCCGACGCAGCCGGTCCCGTTCTCTTCTCTCCCGTTCCCCCCTCCTCCCCCGGCGGCCTGCTCCAGTCCAACTCGGTTCGCCCCGCTACGGCCGTGACAACGTCGTCTTCGTTTCCTGGTCGAGGCTTCGATTTGACGGCCACCATAACGGCAAGTAGCGTCCCCGCCACTGGCTTGATGAAGATTCCGTCTGGATTTTATGAGAAAGCTGGAAATGCATCAGTGGGAGTGGAGAATGAGCAAGGTTCAAATTCAAAGCCACTGAAAGAGAAGACCACCAAAGCCGAAAGGCGAGCGATTCAAGAGGCTCAGCGAGCAGCAAAGGCTGCTGCGAAAGACCATAAGAATCATGCAGTTGCTCCAATGAGGAAAATCTTTGTGCTTCCAGATTCCAGCATTGTTGACAGGGAAAGTGGTTGTTGTGATTTCACCATTGATAAGCTTGATGCACGATCAGTGCTTAAAGCTGGCAAAACATGGGGTTTCTGCTGCTTTCTTGGATCTGGACAACCTGATAGAACTGTGGAAAATCAAGCAATGAGAGGCATGTACAACATAATATACGTTTGCCCTGAGACAATATTAAGACTGATAAAACCACGCCAAAAGTTGGCAGAATTACGTGGATTTGCTCTTTTTGCAATTGATGAAGTGCATTGTGTTTCAAAGTGGGGCCATGATTTTTGGCCTGACTACAGGAGATTGTCTGAGTTGCGAAAGAACTTCAGTGCTAGCAATTTAAAATTCTTAAAATTCGATATACCACTGATGGCATTAACTGCTACTGCCACAATTCAGGTTCGTGAAGACATTCTTAAGTCATTGTCCATGTCAAAGGAAGCAAAAGTTGTGCTTACATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000724 GO:0000725 GO:0003674 GO:0003676 GO:0003677 GO:0003678 GO:0003824 GO:0004003 GO:0004386 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005737 GO:0006139 GO:0006259 GO:0006281 GO:0006302 GO:0006310 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0008026 GO:0008094 GO:0008150 GO:0008152 GO:0009378 GO:0009987 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0032392 GO:0032508 GO:0033554 GO:0034641 GO:0042623 GO:0043138 GO:0043140 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044464 GO:0046483 GO:0050896 GO:0051276 GO:0051716 GO:0070035 GO:0071103 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:0140097 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DEAD Helicase_C RecQ_Zn_bind

Protein Analysis

294

Amino Acids

32.03

Weight (kDa)

9.44

Isoelectric Point (pI)

38.98

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DEAD	PF00270	170 - 276	6.8e-08	DEAD/DEAH box helicase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0019029)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr6g0295551
rosa_laevigata	RLG00000009400
rosa_multiflora	Rmu_sc0002935.1_g000010 Rmu_sc0016819.1_g000001 Rmu_sc0031479.1_g000001
rosa_samantha	Rh5BG325300 Rh5BG493900 Rh5DG336100 Rh6CG379700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	127
AccB7I	CCANNNNNTGG	1 cut(s)	634
AciI	CCGC	4 cut(s)	11, 78, 108, 189
AclWI	GGATC	1 cut(s)	532
AcoI	YGGCCR	2 cut(s)	114, 162
AcsI	RAATTY	3 cut(s)	274, 767, 776
AcuI	CTGAAG	1 cut(s)	733
AfaI	GTAC	1 cut(s)	575
AfiI	CCNNNNNNNGG	4 cut(s)	112, 146, 194, 634
AflII	CTTAAG	1 cut(s)	839
AgsI	TTSAA	4 cut(s)	273, 279, 326, 690
AjnI	CCWGG	1 cut(s)	139
AluBI	AGCT	3 cut(s)	233, 466, 491
AluI	AGCT	3 cut(s)	233, 466, 491
Alw26I	GTCTC	1 cut(s)	593
AlwI	GGATC	1 cut(s)	532
AoxI	GGCC	5 cut(s)	79, 114, 162, 697, 710
ApeKI	GCWGC	5 cut(s)	32, 341, 350, 353, 513
ApoI	RAATTY	3 cut(s)	274, 767, 776
Asp700I	GAANNNNTTC	1 cut(s)	834
AspS9I	GGNCC	2 cut(s)	38, 697
AsuC2I	CCSGG	1 cut(s)	75
AsuHPI	GGTGA	1 cut(s)	445
AsuNHI	GCTAGC	1 cut(s)	755
AvaII	GGWCC	1 cut(s)	38
BbsI	GAAGAC	3 cut(s)	123, 302, 837
BbvI	GCAGC	5 cut(s)	44, 337, 340, 353, 500
BccI	CCATC	1 cut(s)	787
BceAI	ACGGC	4 cut(s)	101, 129, 177, 189
BciT130I	CCWGG	1 cut(s)	141
BcnI	CCSGG	1 cut(s)	75
BcoDI	GTCTC	1 cut(s)	593
BfaI	CTAG	1 cut(s)	756
BfmI	CTRYAG	1 cut(s)	718
BfrI	CTTAAG	1 cut(s)	839
BisI	GCNGC	6 cut(s)	33, 79, 342, 351, 354, 514
BlpI	GCTNAGC	1 cut(s)	333
BlsI	GCNGC	6 cut(s)	34, 80, 343, 352, 355, 515
Bme1390I	CCNGG	2 cut(s)	75, 141
Bme18I	GGWCC	1 cut(s)	38
BmgT120I	GGNCC	2 cut(s)	38, 697
BmiI	GGNNCC	2 cut(s)	40, 698
BmrFI	CCNGG	2 cut(s)	75, 141
BmsI	GCATC	2 cut(s)	251, 460
BmtI	GCTAGC	1 cut(s)	759
BpiI	GAAGAC	3 cut(s)	123, 302, 837
BpmI	CTGGAG	1 cut(s)	71
Bpu1102I	GCTNAGC	1 cut(s)	333
BpuMI	CCSGG	1 cut(s)	75
BsaAI	YACGTR	1 cut(s)	647
BsaJI	CCNNGG	1 cut(s)	73
Bsc4I	CCNNNNNNNGG	4 cut(s)	112, 146, 194, 634
Bse118I	RCCGGY	1 cut(s)	35
Bse1I	ACTGG	2 cut(s)	88, 199
Bse3DI	GCAATG	1 cut(s)	567
BseBI	CCWGG	1 cut(s)	141
BseDI	CCNNGG	1 cut(s)	73
BseLI	CCNNNNNNNGG	4 cut(s)	112, 146, 194, 634
BseMI	GCAATG	1 cut(s)	567
BseMII	CTCAG	3 cut(s)	347, 588, 723
BseNI	ACTGG	2 cut(s)	88, 199
BseRI	GAGGAG	2 cut(s)	13, 58
BseX3I	CGGCCG	1 cut(s)	114
BseXI	GCAGC	5 cut(s)	44, 337, 340, 353, 500
Bsh1285I	CGRYCG	1 cut(s)	117
BshFI	GGCC	5 cut(s)	81, 116, 164, 699, 712
BsiEI	CGRYCG	1 cut(s)	117
BsiSI	CCGG	2 cut(s)	36, 75
BslFI	GGGAC	2 cut(s)	24, 170
BslI	CCNNNNNNNGG	4 cut(s)	112, 146, 194, 634
BsmAI	GTCTC	1 cut(s)	593
BsmFI	GGGAC	2 cut(s)	24, 170
BsnI	GGCC	5 cut(s)	81, 116, 164, 699, 712
Bsp1407I	TGTACA	1 cut(s)	573
Bsp143I	GATC	3 cut(s)	3, 476, 524
Bsp1720I	GCTNAGC	1 cut(s)	333
BspACI	CCGC	4 cut(s)	11, 78, 108, 189
BspANI	GGCC	5 cut(s)	81, 116, 164, 699, 712
BspCNI	CTCAG	3 cut(s)	346, 589, 724
BspLI	GGNNCC	2 cut(s)	40, 698
BspOI	GCTAGC	1 cut(s)	759
BspPI	GGATC	1 cut(s)	532
BspTI	CTTAAG	1 cut(s)	839
BsrDI	GCAATG	1 cut(s)	567
BsrFI	RCCGGY	1 cut(s)	35
BsrGI	TGTACA	1 cut(s)	573
BsrI	ACTGG	2 cut(s)	88, 199
BssAI	RCCGGY	1 cut(s)	35
BssECI	CCNNGG	1 cut(s)	73
BssMI	GATC	3 cut(s)	3, 476, 524
Bst2UI	CCWGG	1 cut(s)	141
Bst4CI	ACNGT	1 cut(s)	547
Bst6I	CTCTTC	1 cut(s)	53
BstAFI	CTTAAG	1 cut(s)	839
BstAPI	GCANNNNNTGC	2 cut(s)	350, 803
BstAUI	TGTACA	1 cut(s)	573
BstBAI	YACGTR	1 cut(s)	647
BstC8I	GCNNGC	5 cut(s)	83, 318, 339, 493, 757
BstDEI	CTNAG	3 cut(s)	333, 597, 732
BstENI	CCTNNNNNAGG	1 cut(s)	144
BstKTI	GATC	3 cut(s)	6, 479, 527
BstMAI	GTCTC	1 cut(s)	593
BstMBI	GATC	3 cut(s)	3, 476, 524
BstMCI	CGRYCG	1 cut(s)	117
BstMWI	GCNNNNNNNGC	6 cut(s)	239, 338, 347, 350, 662, 803
BstNI	CCWGG	1 cut(s)	141
BstNSI	RCATGY	1 cut(s)	574
BstSCI	CCNGG	2 cut(s)	73, 139
BstSFI	CTRYAG	1 cut(s)	718
BstV1I	GCAGC	5 cut(s)	44, 337, 340, 353, 500
BstV2I	GAAGAC	3 cut(s)	123, 302, 837
BstX2I	RGATCY	1 cut(s)	524
BstYI	RGATCY	1 cut(s)	524
BstZI	CGGCCG	1 cut(s)	114
BsuRI	GGCC	5 cut(s)	81, 116, 164, 699, 712
BtsIMutI	CAGTG	6 cut(s)	192, 252, 284, 486, 757, 788
Cac8I	GCNNGC	5 cut(s)	83, 318, 339, 493, 757
Cfr10I	RCCGGY	1 cut(s)	35
Cfr13I	GGNCC	2 cut(s)	38, 697
CseI	GACGC	2 cut(s)	38, 172
Csp6I	GTAC	1 cut(s)	574
CviAII	CATG	5 cut(s)	374, 501, 571, 701, 853
CviQI	GTAC	1 cut(s)	574
DdeI	CTNAG	3 cut(s)	333, 597, 732
DpnI	GATC	3 cut(s)	5, 478, 526
DpnII	GATC	3 cut(s)	3, 476, 524
DraI	TTTAAA	1 cut(s)	765
DrdI	GACNNNNNNGTC	1 cut(s)	127
DseDI	GACNNNNNNGTC	1 cut(s)	127
EaeI	YGGCCR	2 cut(s)	114, 162
EagI	CGGCCG	1 cut(s)	114
Eam1104I	CTCTTC	1 cut(s)	53
EarI	CTCTTC	1 cut(s)	53
EclXI	CGGCCG	1 cut(s)	114
Eco47I	GGWCC	1 cut(s)	38
Eco52I	CGGCCG	1 cut(s)	114
Eco57I	CTGAAG	1 cut(s)	733
EcoNI	CCTNNNNNAGG	1 cut(s)	144
EcoRII	CCWGG	1 cut(s)	139
EcoT22I	ATGCAT	1 cut(s)	244
FaeI	CATG	5 cut(s)	377, 504, 574, 704, 856
FalI	AAGNNNNNCTT	3 cut(s)	822, 854, 861
FaqI	GGGAC	2 cut(s)	24, 170
FatI	CATG	5 cut(s)	373, 500, 570, 700, 852
FauI	CCCGC	3 cut(s)	18, 115, 196
Fnu4HI	GCNGC	6 cut(s)	33, 79, 342, 351, 354, 514
Fsp4HI	GCNGC	6 cut(s)	33, 79, 342, 351, 354, 514
FspBI	CTAG	1 cut(s)	756
GluI	GCNGC	6 cut(s)	33, 79, 342, 351, 354, 514
GsuI	CTGGAG	1 cut(s)	71
HaeIII	GGCC	5 cut(s)	81, 116, 164, 699, 712
HapII	CCGG	2 cut(s)	36, 75
HgaI	GACGC	2 cut(s)	38, 172
Hin1II	CATG	5 cut(s)	377, 504, 574, 704, 856
HincII	GTYRAC	1 cut(s)	427
HindII	GTYRAC	1 cut(s)	427
HindIII	AAGCTT	1 cut(s)	464
HinfI	GANTC	4 cut(s)	208, 322, 370, 413
HpaII	CCGG	2 cut(s)	36, 75
HphI	GGTGA	1 cut(s)	445
Hpy166II	GTNNAC	1 cut(s)	427
Hpy188I	TCNGA	2 cut(s)	28, 733
Hpy188III	TCNNGA	5 cut(s)	216, 326, 410, 528, 827
Hpy8I	GTNNAC	1 cut(s)	427
Hpy99I	CGWCG	2 cut(s)	32, 130
HpyCH4III	ACNGT	1 cut(s)	547
HpyCH4IV	ACGT	3 cut(s)	125, 588, 646
HpyCH4V	TGCA	5 cut(s)	242, 377, 473, 665, 679
HpyF10VI	GCNNNNNNNGC	6 cut(s)	239, 338, 347, 350, 662, 803
HpyF3I	CTNAG	3 cut(s)	333, 597, 732
HpySE526I	ACGT	3 cut(s)	125, 588, 646
Hsp92II	CATG	5 cut(s)	377, 504, 574, 704, 856
Kzo9I	GATC	3 cut(s)	3, 476, 524
LmnI	GCTCC	2 cut(s)	90, 388
Lsp1109I	GCAGC	5 cut(s)	44, 337, 340, 353, 500
LweI	GCATC	2 cut(s)	251, 460
MaeI	CTAG	1 cut(s)	756
MaeII	ACGT	3 cut(s)	125, 588, 646
MaeIII	GTNAC	1 cut(s)	118
MalI	GATC	3 cut(s)	5, 478, 526
MboI	GATC	3 cut(s)	3, 476, 524
MboII	GAAGA	5 cut(s)	40, 123, 217, 307, 842
MfeI	CAATTG	1 cut(s)	666
MflI	RGATCY	1 cut(s)	524
MluCI	AATT	7 cut(s)	274, 641, 666, 760, 767, 776, 816
MmeI	TCCRAC	2 cut(s)	51, 117
MnlI	CCTC	7 cut(s)	34, 76, 79, 140, 322, 384, 560
Mph1103I	ATGCAT	1 cut(s)	244
MroXI	GAANNNNTTC	1 cut(s)	834
MseI	TTAA	6 cut(s)	486, 608, 764, 773, 800, 840
MspCI	CTTAAG	1 cut(s)	839
MspI	CCGG	2 cut(s)	36, 75
MspR9I	CCNGG	2 cut(s)	75, 141
MunI	CAATTG	1 cut(s)	666
MvaI	CCWGG	1 cut(s)	141
MwoI	GCNNNNNNNGC	6 cut(s)	239, 338, 347, 350, 662, 803
NciI	CCSGG	1 cut(s)	75
NdeII	GATC	3 cut(s)	3, 476, 524
NheI	GCTAGC	1 cut(s)	755
NlaIII	CATG	5 cut(s)	377, 504, 574, 704, 856
NlaIV	GGNNCC	2 cut(s)	40, 698
NmuCI	GTSAC	1 cut(s)	118
NsiI	ATGCAT	1 cut(s)	244
NspI	RCATGY	1 cut(s)	574
PcsI	WCGNNNNNNNCGW	1 cut(s)	131
PdmI	GAANNNNTTC	1 cut(s)	834
PfeI	GAWTC	4 cut(s)	208, 322, 370, 413
PflFI	GACNNNGTC	1 cut(s)	124
PflMI	CCANNNNNTGG	1 cut(s)	634
PkrI	GCNGC	6 cut(s)	34, 80, 343, 352, 355, 515
Ppu21I	YACGTR	1 cut(s)	647
Psp6I	CCWGG	1 cut(s)	139
PspGI	CCWGG	1 cut(s)	139
PspN4I	GGNNCC	2 cut(s)	40, 698
PspPI	GGNCC	2 cut(s)	38, 697
PsuI	RGATCY	1 cut(s)	524
PsyI	GACNNNGTC	1 cut(s)	124
RsaI	GTAC	1 cut(s)	575
RsaNI	GTAC	1 cut(s)	574
SaqAI	TTAA	6 cut(s)	486, 608, 764, 773, 800, 840
SatI	GCNGC	6 cut(s)	33, 79, 342, 351, 354, 514
Sau3AI	GATC	3 cut(s)	3, 476, 524
Sau96I	GGNCC	2 cut(s)	38, 697
ScrFI	CCNGG	2 cut(s)	75, 141
SetI	ASST	9 cut(s)	128, 235, 271, 468, 493, 538, 591, 649, 825
SfaNI	GCATC	2 cut(s)	251, 460
SfcI	CTRYAG	1 cut(s)	718
SinI	GGWCC	1 cut(s)	38
SmlI	CTYRAG	1 cut(s)	839
SmoI	CTYRAG	1 cut(s)	839
Sse9I	AATT	7 cut(s)	274, 641, 666, 760, 767, 776, 816
SsiI	CCGC	4 cut(s)	11, 78, 108, 189
SspI	AATATT	1 cut(s)	606
SspMI	CTAG	1 cut(s)	756
StyD4I	CCNGG	2 cut(s)	73, 139
TaaI	ACNGT	1 cut(s)	547
TaiI	ACGT	3 cut(s)	128, 591, 649
TaqI	TCGA	3 cut(s)	145, 153, 780
TasI	AATT	7 cut(s)	274, 641, 666, 760, 767, 776, 816
TatI	WGTACW	1 cut(s)	573
TauI	GCSGC	1 cut(s)	81
TfiI	GAWTC	4 cut(s)	208, 322, 370, 413
Tru1I	TTAA	6 cut(s)	486, 608, 764, 773, 800, 840
Tru9I	TTAA	6 cut(s)	486, 608, 764, 773, 800, 840
TscAI	CASTG	6 cut(s)	199, 252, 291, 486, 757, 795
TseFI	GTSAC	1 cut(s)	118
TseI	GCWGC	5 cut(s)	32, 341, 350, 353, 513
Tsp45I	GTSAC	1 cut(s)	118
TspDTI	ATGAA	2 cut(s)	218, 687
TspGWI	ACGGA	1 cut(s)	201
TspRI	CASTG	6 cut(s)	199, 252, 291, 486, 757, 795
Tth111I	GACNNNGTC	1 cut(s)	124
Van91I	CCANNNNNTGG	1 cut(s)	634
Vha464I	CTTAAG	1 cut(s)	839
VpaK11BI	GGWCC	1 cut(s)	38
XagI	CCTNNNNNAGG	1 cut(s)	144
XapI	RAATTY	3 cut(s)	274, 767, 776
XceI	RCATGY	1 cut(s)	574
XmnI	GAANNNNTTC	1 cut(s)	834
XspI	CTAG	1 cut(s)	756
Zsp2I	ATGCAT	1 cut(s)	244

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.