Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0012830

Physical Location & Seq

Genomic Coordinates Reverse (-)

63061762 .. 63068588

Gene Structure 6827 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ27247

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2400 bp

ATGCTACTGGACGGAATCGAAGACGAGGACAAATGGCTCGCAGAAGGCATCGCCGGCATTCAACACCACGCCTTCTACATGCATCGAGCTCTGGACGCTAACAATCTCAGAGACGCTCTCAAATACTCGGCTCAGATGCTCTCCGAGCTCCGAACCTCGAGGCTCTCGCCTCACAAATACTACGAACTCTATATGCGAGCGTTCGATGAGTTGAGGAAGCTGGAGATGTTCTTCAAGGACGAGAGCAGGCATGGCGTTTCGATCATTGATCTCTACGAGCTTGTTCAGCACGCTGGCAACATTCTACCGAGATTGTATCTCCTATGTACGGTAGGATCTGTGTACATTAAATCAAAGGAAGCACCTGCCAAAGACGTGCTTAAAGACCTTGTGGAAATGTGTCGTGCTGTTCAACATCCGATTCGGGGGCTCTTTCTGAGGAGTTACCTTTCTCAAGTCAGTAGAGATAAGTTACCTGATCTCGGTTCTGAGTATGAAGGAGGTTCTGACACTGTTACGGATGCCGTAGATTTTGTGCTACAGAATTTTACAGAGATGAATAAGCTTTGGGTTCGAATGCAGTATCAGGCCTTCTTTGGGCTTTCTGGTCTGCAGGGACCTGGTCGGGCGAGAGAGAAGCATGAGAAGGAAAGAAGCGAACTTCGTGATCTAGTAGGGAAAAATCTCCTTGTTCTCAGTCAGATAGAGGGTGTGGAACTCCAAATGTACAAAGACACTGTTCTTCCCAGAGTATTAGAGCAGGTTATCAACTGTAAAGATGAGCTGGCCCAGTATTATTTGATGGATTGCCTGATCCAGGTCTTTCCGGATGAGTACCACTTGCAGACACTGGAGACATTATTGGGTGCTTGCCCCCAGCTTCAGCCAACAGTGGATATCAAGACAGTGCTATCTCAATTAATGGACAGGTTATCAAATTATGCTGCTTCAAGTACAGATGTATTACCCGAATTTCTTCAAGTCGAAGCTTTCGCTAAATTAAGTAGTGCTATTGGGAGGGTGATAGAAGCACAAGTTGACATGCCTATTGTTGGAGCCATATCTTTGTACGTCTCTCTTCTTACATTCACACTCCGTGTTCATCCTGATCGTCTAGATTATGTGGATCAAGTACTGGGAGCATGTGTTAGGAAGCTACCGGGAAACACTAAGGTTGAAGACAAGAGAGCCATAAAGCAGGTTGTCGCACTATTAAGTGCTCCTTTGGAAAAGTACAATGACATTGTCACAGCCCTCACACTTTCTAATTATCCTCGAGTTATGGATCACCTTGATAATGGAACAAATAAAGTCATGGCAATGGTTATCATTCAAAGCATTATGAAAAACGACTCTTGTATCTCGACTGCTGATAAGGTGGAGGTATTGTTTGAATTAATCAAAGGGCTGATCAAGGATTTGGATGGTACTTCTGATGATGAGCTTGACGAGGAGGATTTTCATGATGAGCAAAATTCTGTTGCTCGCCTTATACACATGCTTTATAATGATGATCCAGAAGAAATGTTAAAGATCATATGTACGGTAAAGAAGCACATAATGAATGGAGGGCCAAAGCGCTTACCTTTTACTGTTCCTCCTCTTGTTTTTTCTGCACTTGGGTTGGTTAGGCAACTGCAAGGTCAGGATGGAGAGGTAGTTGGAGAAGATATGCCTGCCACGCCGAAGACAGTTTTTCAGTTTCTAAATCAGACAGTAGACGCTCTTTCCTCTATTCCGTCTCCTGAACTGGCATTAAGGCTGTACTTACATTGTGCTGAGGCTGCCAACGACTGTGATCTTGAACCTGTTGCTTATGAATTCTTCACTCAGGCATTTGTACTATATGAAGAAGAAATCGCGGATTCCAAAGCTCAAGTGACTGCAATACATCTCATTATTGGGGCTCTTCAGAGGATGAATGTGTTTGGCACTGAAAATAGGGATACTTTAACACACAAGGCCACAGGGTATTCTGCAAAGCTTTTGAAGAAACCTGACCAGTGCCGAGCAGTGTATGCATGTTCACACCTGTTTTGGGTTGATGATCAGGATGGTGTTAAAGATGGAGAAAGGGTCTTGCTTTGTTTAAAGCGTGCCTTAAGAATTGCAAATGCTGCTCAACAAATGGCCAGTGTAACTCGGGGTAGCAGTGGGCCAGTGACACTCTTTGTTGAAATACTAAACAAGTACCTCTACTTTTTTGAGAAAGGAAACCCCCAGATTACCAGTGCTGCAATTCAGGGATTGGTGGAGTTAATTACAACCGAGTTGCAAAGTGACTCTAGTAATGTGAAACCGGCCTCTGATGCATTTTTTGCCAGCACATTGCGGTACATACAGTTCCAGAAACAGAAAGGCGGGGCAATGGGTGAAAAATATGCATCTATTAAGGTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005770 GO:0006810 GO:0006886 GO:0008104 GO:0008150 GO:0008565 GO:0012505 GO:0015031 GO:0015833 GO:0016020 GO:0016192 GO:0016197 GO:0016482 GO:0030904 GO:0031410 GO:0031982 GO:0032991 GO:0033036 GO:0034613 GO:0042147 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0044424 GO:0044425 GO:0044444 GO:0044464 GO:0045184 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0070727 GO:0071702 GO:0071705 GO:0097708 GO:0098796

KEGG Pathways

Metabolic & Signaling

ko04144 map04144

Pfam Domains

Protein Families

Vps35

Protein Analysis

799

Amino Acids

89.82

Weight (kDa)

5.28

Isoelectric Point (pI)

38.58

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Vps35	PF03635	12 - 756	1.8e-286	Vacuolar protein sorting-associated protein 35

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0012830)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G75850 AT1G75850
fragaria_vesca	FvH4_2g38180 FvH4_2g38180
malus_domestica	MD15G1010200.v1.1
prunus_persica	Prupe.1G362700_v2.0.a1
pyrus_communis	pycom15g00840
rosa_chinensis	RchiOBHm_Chr6g0303301
rosa_laevigata	RLG00000011094
rosa_multiflora	Rmu_sc0006346.1_g000001 Rmu_sc0019430.1_g000001
rosa_roxburghii	Rroxscaffold_7G00164890
rosa_rugosa	Rorug06G0320200
rosa_samantha	Rh6AG434600 Rh6BG468500 Rh6CG446600 Rh6DG433300
rosa_wichuraiana	Rw6G037630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1506
AarI	CACCTGC	1 cut(s)	373
AbsI	CCTCGAGG	1 cut(s)	157
Acc36I	ACCTGC	3 cut(s)	373, 751, 1189
AccI	GTMKAC	1 cut(s)	1719
AccII	CGCG	1 cut(s)	1862
AccIII	TCCGGA	1 cut(s)	826
AciI	CCGC	3 cut(s)	1862, 2332, 2361
AclWI	GGATC	5 cut(s)	343, 808, 1134, 1293, 1508
AcoI	YGGCCR	1 cut(s)	2130
AcsI	RAATTY	4 cut(s)	544, 971, 1474, 1820
AcuI	CTGAAG	2 cut(s)	866, 1895
AdeI	CACNNNGTG	1 cut(s)	1097
AfeI	AGCGCT	1 cut(s)	1580
AfiI	CCNNNNNNNGG	7 cut(s)	328, 425, 482, 597, 817, 1052, 2038
AflII	CTTAAG	1 cut(s)	2101
AjiI	CACGTC	1 cut(s)	376
AjnI	CCWGG	2 cut(s)	619, 816
Alw21I	GWGCWC	3 cut(s)	91, 150, 1222
Alw26I	GTCTC	4 cut(s)	105, 848, 1078, 1746
AlwI	GGATC	5 cut(s)	343, 808, 1134, 1293, 1508
AlwNI	CAGNNNCTG	1 cut(s)	850
Ama87I	CYCGRG	3 cut(s)	157, 1275, 2142
Aor13HI	TCCGGA	1 cut(s)	826
Aor51HI	AGCGCT	1 cut(s)	1580
AoxI	GGCC	7 cut(s)	588, 786, 1571, 1962, 2130, 2156, 2301
ApeKI	GCWGC	4 cut(s)	944, 1784, 2117, 2234
ApoI	RAATTY	4 cut(s)	544, 971, 1474, 1820
AseI	ATTAAT	2 cut(s)	920, 1397
Asp700I	GAANNNNTTC	1 cut(s)	975
AspLEI	GCGC	1 cut(s)	1581
AspS9I	GGNCC	4 cut(s)	617, 787, 1571, 2156
AsuC2I	CCSGG	1 cut(s)	1161
AsuHPI	GGTGA	3 cut(s)	1033, 1280, 2384
AsuII	TTCGAA	1 cut(s)	574
AvaI	CYCGRG	3 cut(s)	157, 1275, 2142
AvaII	GGWCC	1 cut(s)	617
BaeI	ACNNNNGTAYC	2 cut(s)	1342, 1375
BalI	TGGCCA	1 cut(s)	2132
BanII	GRGCYC	4 cut(s)	91, 150, 432, 1909
BarI	GAAGNNNNNNTAC	2 cut(s)	575, 607
BbsI	GAAGAC	3 cut(s)	27, 1185, 1694
Bbv12I	GWGCWC	3 cut(s)	91, 150, 1222
BbvCI	CCTCAGC	1 cut(s)	1779
BbvI	GCAGC	4 cut(s)	931, 1771, 2104, 2221
BccI	CCATC	5 cut(s)	796, 1418, 1643, 2048, 2060
BceAI	ACGGC	1 cut(s)	509
BciT130I	CCWGG	2 cut(s)	621, 818
BciVI	GTATCC	1 cut(s)	1939
BclI	TGATCA	2 cut(s)	1410, 2047
BcnI	CCSGG	1 cut(s)	1161
BcoDI	GTCTC	4 cut(s)	105, 848, 1078, 1746
BfaI	CTAG	3 cut(s)	671, 1115, 2286
BfmI	CTRYAG	2 cut(s)	539, 611
BfoI	RGCGCY	1 cut(s)	1582
BfrI	CTTAAG	1 cut(s)	2101
BfuAI	ACCTGC	3 cut(s)	373, 751, 1189
BfuI	GTATCC	1 cut(s)	1939
BisI	GCNGC	4 cut(s)	945, 1785, 2118, 2235
BlsI	GCNGC	4 cut(s)	946, 1786, 2119, 2236
BmcAI	AGTACT	1 cut(s)	1134
Bme1390I	CCNGG	3 cut(s)	621, 818, 1161
Bme18I	GGWCC	1 cut(s)	617
BmeT110I	CYCGRG	3 cut(s)	157, 1275, 2142
BmgBI	CACGTC	1 cut(s)	376
BmgT120I	GGNCC	4 cut(s)	617, 787, 1571, 2156
BmiI	GGNNCC	2 cut(s)	618, 1057
BmrFI	CCNGG	3 cut(s)	621, 818, 1161
BmrI	ACTGGG	2 cut(s)	784, 1145
BmsI	GCATC	6 cut(s)	57, 91, 126, 511, 2299, 2393
BmuI	ACTGGG	2 cut(s)	784, 1145
BpiI	GAAGAC	3 cut(s)	27, 1185, 1694
BplI	GAGNNNNNCTC	2 cut(s)	102, 134
BpmI	CTGGAG	2 cut(s)	242, 872
Bpu10I	CCTNAGC	1 cut(s)	1779
Bpu14I	TTCGAA	1 cut(s)	574
BpuEI	CTTGAG	2 cut(s)	438, 1860
BpuMI	CCSGG	1 cut(s)	1161
BsaWI	WCCGGW	1 cut(s)	826
Bsc4I	CCNNNNNNNGG	7 cut(s)	328, 425, 482, 597, 817, 1052, 2038
Bse118I	RCCGGY	2 cut(s)	53, 2299
Bse1I	ACTGG	9 cut(s)	12, 790, 855, 1140, 1755, 2002, 2133, 2159, 2229
Bse3DI	GCAATG	3 cut(s)	1326, 2327, 2373
BseAI	TCCGGA	1 cut(s)	826
BseBI	CCWGG	2 cut(s)	621, 818
BseGI	GGATG	8 cut(s)	415, 526, 835, 1102, 1429, 1654, 1923, 2059
BseLI	CCNNNNNNNGG	7 cut(s)	328, 425, 482, 597, 817, 1052, 2038
BseMI	GCAATG	3 cut(s)	1326, 2327, 2373
BseMII	CTCAG	7 cut(s)	121, 146, 428, 480, 709, 1770, 1844
BseNI	ACTGG	9 cut(s)	12, 790, 855, 1140, 1755, 2002, 2133, 2159, 2229
BseRI	GAGGAG	3 cut(s)	454, 1466, 1590
BseXI	GCAGC	4 cut(s)	931, 1771, 2104, 2221
BseYI	CCCAGC	1 cut(s)	876
BsgI	GTGCAG	1 cut(s)	1599
Bsh1236I	CGCG	1 cut(s)	1862
BshFI	GGCC	7 cut(s)	590, 788, 1573, 1964, 2132, 2158, 2303
BsiHKAI	GWGCWC	3 cut(s)	91, 150, 1222
BsiHKCI	CYCGRG	3 cut(s)	157, 1275, 2142
BsiSI	CCGG	4 cut(s)	54, 827, 1160, 2300
BslFI	GGGAC	1 cut(s)	630
BslI	CCNNNNNNNGG	7 cut(s)	328, 425, 482, 597, 817, 1052, 2038
BsmAI	GTCTC	4 cut(s)	105, 848, 1078, 1746
BsmBI	CGTCTC	3 cut(s)	105, 1078, 1746
BsmFI	GGGAC	1 cut(s)	630
BsmI	GAATGC	2 cut(s)	57, 582
BsnI	GGCC	7 cut(s)	590, 788, 1573, 1964, 2132, 2158, 2303
BsoBI	CYCGRG	3 cut(s)	157, 1275, 2142
Bsp119I	TTCGAA	1 cut(s)	574
Bsp1286I	GDGCHC	5 cut(s)	91, 150, 432, 1222, 1909
Bsp13I	TCCGGA	1 cut(s)	826
Bsp1407I	TGTACA	2 cut(s)	342, 726
BspACI	CCGC	3 cut(s)	1862, 2332, 2361
BspANI	GGCC	7 cut(s)	590, 788, 1573, 1964, 2132, 2158, 2303
BspCNI	CTCAG	7 cut(s)	120, 145, 429, 481, 708, 1771, 1843
BspEI	TCCGGA	1 cut(s)	826
BspFNI	CGCG	1 cut(s)	1862
BspHI	TCATGA	1 cut(s)	1462
BspLI	GGNNCC	2 cut(s)	618, 1057
BspMAI	CTGCAG	1 cut(s)	615
BspMI	ACCTGC	3 cut(s)	373, 751, 1189
BspPI	GGATC	5 cut(s)	343, 808, 1134, 1293, 1508
BspQI	GCTCTTC	1 cut(s)	1914
BspT104I	TTCGAA	1 cut(s)	574
BspTI	CTTAAG	1 cut(s)	2101
BsrDI	GCAATG	3 cut(s)	1326, 2327, 2373
BsrFI	RCCGGY	2 cut(s)	53, 2299
BsrGI	TGTACA	2 cut(s)	342, 726
BsrI	ACTGG	9 cut(s)	12, 790, 855, 1140, 1755, 2002, 2133, 2159, 2229
BssAI	RCCGGY	2 cut(s)	53, 2299
Bst2UI	CCWGG	2 cut(s)	621, 818
Bst6I	CTCTTC	2 cut(s)	1083, 1914
BstAFI	CTTAAG	1 cut(s)	2101
BstAPI	GCANNNNNTGC	3 cut(s)	2018, 2117, 2318
BstAUI	TGTACA	2 cut(s)	342, 726
BstBI	TTCGAA	1 cut(s)	574
BstDEI	CTNAG	8 cut(s)	107, 132, 437, 489, 695, 1170, 1779, 1830
BstENI	CCTNNNNNAGG	1 cut(s)	815
BstF5I	GGATG	8 cut(s)	415, 526, 835, 1102, 1429, 1654, 1923, 2059
BstFNI	CGCG	1 cut(s)	1862
BstH2I	RGCGCY	1 cut(s)	1582
BstHHI	GCGC	1 cut(s)	1581
BstMAI	GTCTC	4 cut(s)	105, 848, 1078, 1746
BstNI	CCWGG	2 cut(s)	621, 818
BstNSI	RCATGY	5 cut(s)	82, 1045, 1146, 1501, 2025
BstSCI	CCNGG	3 cut(s)	619, 816, 1159
BstSFI	CTRYAG	2 cut(s)	539, 611
BstUI	CGCG	1 cut(s)	1862
BstV1I	GCAGC	4 cut(s)	931, 1771, 2104, 2221
BstV2I	GAAGAC	3 cut(s)	27, 1185, 1694
BstX2I	RGATCY	1 cut(s)	335
BstYI	RGATCY	1 cut(s)	335
BsuI	GTATCC	1 cut(s)	1939
BsuRI	GGCC	7 cut(s)	590, 788, 1573, 1964, 2132, 2158, 2303
BtgZI	GCGATG	1 cut(s)	34
BtrI	CACGTC	1 cut(s)	376
BtsCI	GGATG	8 cut(s)	415, 526, 835, 1102, 1429, 1654, 1923, 2059
BtsI	GCAGTG	2 cut(s)	2019, 2158
BveI	ACCTGC	3 cut(s)	373, 751, 1189
CaiI	CAGNNNCTG	1 cut(s)	850
CciI	TCATGA	1 cut(s)	1462
CfoI	GCGC	1 cut(s)	1581
Cfr10I	RCCGGY	2 cut(s)	53, 2299
Cfr13I	GGNCC	4 cut(s)	617, 787, 1571, 2156
CseI	GACGC	3 cut(s)	104, 122, 1730
CsiI	ACCWGGT	1 cut(s)	619
CviAII	CATG	9 cut(s)	79, 251, 641, 1042, 1143, 1315, 1463, 1498, 2022
DdeI	CTNAG	8 cut(s)	107, 132, 437, 489, 695, 1170, 1779, 1830
DraI	TTTAAA	1 cut(s)	2091
DraIII	CACNNNGTG	1 cut(s)	1097
EaeI	YGGCCR	1 cut(s)	2130
Eam1104I	CTCTTC	2 cut(s)	1083, 1914
EarI	CTCTTC	2 cut(s)	1083, 1914
Ecl136II	GAGCTC	2 cut(s)	89, 148
Eco147I	AGGCCT	1 cut(s)	590
Eco24I	GRGCYC	4 cut(s)	91, 150, 432, 1909
Eco32I	GATATC	1 cut(s)	898
Eco47I	GGWCC	1 cut(s)	617
Eco47III	AGCGCT	1 cut(s)	1580
Eco53kI	GAGCTC	2 cut(s)	89, 148
Eco57I	CTGAAG	2 cut(s)	866, 1895
Eco88I	CYCGRG	3 cut(s)	157, 1275, 2142
EcoICRI	GAGCTC	2 cut(s)	89, 148
EcoNI	CCTNNNNNAGG	1 cut(s)	815
EcoO109I	RGGNCCY	1 cut(s)	617
EcoRI	GAATTC	1 cut(s)	1820
EcoRII	CCWGG	2 cut(s)	619, 816
EcoRV	GATATC	1 cut(s)	898
EcoT22I	ATGCAT	4 cut(s)	84, 2023, 2314, 2386
EcoT38I	GRGCYC	4 cut(s)	91, 150, 432, 1909
Esp3I	CGTCTC	3 cut(s)	105, 1078, 1746
FaeI	CATG	9 cut(s)	82, 254, 644, 1045, 1146, 1318, 1466, 1501, 2025
FalI	AAGNNNNNCTT	6 cut(s)	363, 395, 1207, 1239, 2084, 2116
FaqI	GGGAC	1 cut(s)	630
FatI	CATG	9 cut(s)	78, 250, 640, 1041, 1142, 1314, 1462, 1497, 2021
FauI	CCCGC	1 cut(s)	2354
FauNDI	CATATG	1 cut(s)	1538
FbaI	TGATCA	2 cut(s)	1410, 2047
FblI	GTMKAC	1 cut(s)	1719
Fnu4HI	GCNGC	4 cut(s)	945, 1785, 2118, 2235
FokI	GGATG	8 cut(s)	402, 533, 842, 1089, 1436, 1661, 1930, 2066
FriOI	GRGCYC	4 cut(s)	91, 150, 432, 1909
Fsp4HI	GCNGC	4 cut(s)	945, 1785, 2118, 2235
FspBI	CTAG	3 cut(s)	671, 1115, 2286
GlaI	GCGC	1 cut(s)	1580
GluI	GCNGC	4 cut(s)	945, 1785, 2118, 2235
GsaI	CCCAGC	1 cut(s)	880
GsuI	CTGGAG	2 cut(s)	242, 872
HaeII	RGCGCY	1 cut(s)	1582
HaeIII	GGCC	7 cut(s)	590, 788, 1573, 1964, 2132, 2158, 2303
HapII	CCGG	4 cut(s)	54, 827, 1160, 2300
HgaI	GACGC	3 cut(s)	104, 122, 1730
HhaI	GCGC	1 cut(s)	1581
Hin1II	CATG	9 cut(s)	82, 254, 644, 1045, 1146, 1318, 1466, 1501, 2025
Hin6I	GCGC	1 cut(s)	1579
HinP1I	GCGC	1 cut(s)	1579
HincII	GTYRAC	1 cut(s)	1039
HindII	GTYRAC	1 cut(s)	1039
HindIII	AAGCTT	3 cut(s)	563, 987, 1982
HinfI	GANTC	5 cut(s)	15, 421, 1352, 1865, 2282
HpaII	CCGG	4 cut(s)	54, 827, 1160, 2300
HphI	GGTGA	3 cut(s)	1033, 1280, 2384
Hpy166II	GTNNAC	4 cut(s)	343, 1039, 1720, 2027
Hpy8I	GTNNAC	4 cut(s)	343, 1039, 1720, 2027
HpyAV	CCTTC	5 cut(s)	38, 82, 491, 601, 640
HpyCH4IV	ACGT	2 cut(s)	375, 1071
HpyF3I	CTNAG	8 cut(s)	107, 132, 437, 489, 695, 1170, 1779, 1830
HpySE526I	ACGT	2 cut(s)	375, 1071
Hsp92II	CATG	9 cut(s)	82, 254, 644, 1045, 1146, 1318, 1466, 1501, 2025
HspAI	GCGC	1 cut(s)	1579
Kpn2I	TCCGGA	1 cut(s)	826
KroI	GCCGGC	1 cut(s)	53
KroNI	GCCGGC	1 cut(s)	55
Ksp22I	TGATCA	2 cut(s)	1410, 2047
LguI	GCTCTTC	1 cut(s)	1914
LmnI	GCTCC	4 cut(s)	153, 1055, 1139, 1225
Lsp1109I	GCAGC	4 cut(s)	931, 1771, 2104, 2221
LweI	GCATC	6 cut(s)	57, 91, 126, 511, 2299, 2393
MabI	ACCWGGT	1 cut(s)	619
MaeI	CTAG	3 cut(s)	671, 1115, 2286
MaeII	ACGT	2 cut(s)	375, 1071
MaeIII	GTNAC	8 cut(s)	443, 471, 514, 1246, 1879, 2137, 2161, 2279
MflI	RGATCY	1 cut(s)	335
MhlI	GDGCHC	5 cut(s)	91, 150, 432, 1222, 1909
MlsI	TGGCCA	1 cut(s)	2132
MluNI	TGGCCA	1 cut(s)	2132
MlyI	GAGTC	2 cut(s)	1346, 2276
MmeI	TCCRAC	2 cut(s)	1033, 1642
Mox20I	TGGCCA	1 cut(s)	2132
Mph1103I	ATGCAT	4 cut(s)	84, 2023, 2314, 2386
MroI	TCCGGA	1 cut(s)	826
MroNI	GCCGGC	1 cut(s)	53
MroXI	GAANNNNTTC	1 cut(s)	975
MscI	TGGCCA	1 cut(s)	2132
MslI	CAYNNNNRTG	1 cut(s)	1319
Msp20I	TGGCCA	1 cut(s)	2132
MspCI	CTTAAG	1 cut(s)	2101
MspI	CCGG	4 cut(s)	54, 827, 1160, 2300
MspR9I	CCNGG	3 cut(s)	621, 818, 1161
Mva1269I	GAATGC	2 cut(s)	57, 582
MvaI	CCWGG	2 cut(s)	621, 818
MvnI	CGCG	1 cut(s)	1862
NaeI	GCCGGC	1 cut(s)	55
NciI	CCSGG	1 cut(s)	1161
NdeI	CATATG	1 cut(s)	1538
NgoMIV	GCCGGC	1 cut(s)	53
NlaIII	CATG	9 cut(s)	82, 254, 644, 1045, 1146, 1318, 1466, 1501, 2025
NlaIV	GGNNCC	2 cut(s)	618, 1057
NmeAIII	GCCGAG	2 cut(s)	107, 2033
NmuCI	GTSAC	4 cut(s)	1246, 1879, 2161, 2279
NsiI	ATGCAT	4 cut(s)	84, 2023, 2314, 2386
NspI	RCATGY	5 cut(s)	82, 1045, 1146, 1501, 2025
NspV	TTCGAA	1 cut(s)	574
PaeR7I	CTCGAG	2 cut(s)	157, 1275
PagI	TCATGA	1 cut(s)	1462
PaqCI	CACCTGC	1 cut(s)	373
PceI	AGGCCT	1 cut(s)	590
PciSI	GCTCTTC	1 cut(s)	1914
PctI	GAATGC	2 cut(s)	57, 582
PdiI	GCCGGC	1 cut(s)	55
PdmI	GAANNNNTTC	1 cut(s)	975
PfeI	GAWTC	3 cut(s)	15, 421, 1865
PflFI	GACNNNGTC	2 cut(s)	621, 1244
PkrI	GCNGC	4 cut(s)	946, 1786, 2119, 2236
PleI	GAGTC	2 cut(s)	1346, 2276
PpsI	GAGTC	2 cut(s)	1346, 2276
PpuMI	RGGWCCY	1 cut(s)	617
PshBI	ATTAAT	2 cut(s)	920, 1397
PsiI	TTATAA	1 cut(s)	1506
Psp124BI	GAGCTC	2 cut(s)	91, 150
Psp5II	RGGWCCY	1 cut(s)	617
Psp6I	CCWGG	2 cut(s)	619, 816
PspFI	CCCAGC	1 cut(s)	876
PspGI	CCWGG	2 cut(s)	619, 816
PspN4I	GGNNCC	2 cut(s)	618, 1057
PspPI	GGNCC	4 cut(s)	617, 787, 1571, 2156
PspPPI	RGGWCCY	1 cut(s)	617
PspXI	VCTCGAGB	2 cut(s)	157, 1275
PsrI	GAACNNNNNNTAC	2 cut(s)	2327, 2359
PstI	CTGCAG	1 cut(s)	615
PstNI	CAGNNNCTG	1 cut(s)	850
PsuI	RGATCY	1 cut(s)	335
PsyI	GACNNNGTC	2 cut(s)	621, 1244
RseI	CAYNNNNRTG	1 cut(s)	1319
SacI	GAGCTC	2 cut(s)	91, 150
SapI	GCTCTTC	1 cut(s)	1914
SatI	GCNGC	4 cut(s)	945, 1785, 2118, 2235
Sau96I	GGNCC	4 cut(s)	617, 787, 1571, 2156
ScaI	AGTACT	1 cut(s)	1134
SchI	GAGTC	2 cut(s)	1346, 2276
ScrFI	CCNGG	3 cut(s)	621, 818, 1161
SduI	GDGCHC	5 cut(s)	91, 150, 432, 1222, 1909
SexAI	ACCWGGT	1 cut(s)	619
SfaNI	GCATC	6 cut(s)	57, 91, 126, 511, 2299, 2393
SfcI	CTRYAG	2 cut(s)	539, 611
Sfr274I	CTCGAG	2 cut(s)	157, 1275
SfuI	TTCGAA	1 cut(s)	574
SinI	GGWCC	1 cut(s)	617
SlaI	CTCGAG	2 cut(s)	157, 1275
SmiMI	CAYNNNNRTG	1 cut(s)	1319
SmlI	CTYRAG	5 cut(s)	157, 453, 1275, 1875, 2101
SmoI	CTYRAG	5 cut(s)	157, 453, 1275, 1875, 2101
SseBI	AGGCCT	1 cut(s)	590
SsiI	CCGC	3 cut(s)	1862, 2332, 2361
SspMI	CTAG	3 cut(s)	671, 1115, 2286
SstI	GAGCTC	2 cut(s)	91, 150
StuI	AGGCCT	1 cut(s)	590
StyD4I	CCNGG	3 cut(s)	619, 816, 1159
TaiI	ACGT	2 cut(s)	378, 1074
TaqI	TCGA	9 cut(s)	18, 85, 158, 204, 260, 574, 984, 1276, 1364
TatI	WGTACW	7 cut(s)	342, 726, 953, 1132, 1233, 1764, 1840
TfiI	GAWTC	3 cut(s)	15, 421, 1865
TseFI	GTSAC	4 cut(s)	1246, 1879, 2161, 2279
TseI	GCWGC	4 cut(s)	944, 1784, 2117, 2234
Tsp45I	GTSAC	4 cut(s)	1246, 1879, 2161, 2279
TspDTI	ATGAA	9 cut(s)	510, 572, 1091, 1358, 1451, 1577, 1833, 1863, 1934
TspGWI	ACGGA	4 cut(s)	27, 533, 1085, 1728
Tth111I	GACNNNGTC	2 cut(s)	621, 1244
Vha464I	CTTAAG	1 cut(s)	2101
VpaK11BI	GGWCC	1 cut(s)	617
VspI	ATTAAT	2 cut(s)	920, 1397
XagI	CCTNNNNNAGG	1 cut(s)	815
XapI	RAATTY	4 cut(s)	544, 971, 1474, 1820
XbaI	TCTAGA	1 cut(s)	1114
XceI	RCATGY	5 cut(s)	82, 1045, 1146, 1501, 2025
XhoI	CTCGAG	2 cut(s)	157, 1275
XmiI	GTMKAC	1 cut(s)	1719
XmnI	GAANNNNTTC	1 cut(s)	975
XspI	CTAG	3 cut(s)	671, 1115, 2286
ZrmI	AGTACT	1 cut(s)	1134
Zsp2I	ATGCAT	4 cut(s)	84, 2023, 2314, 2386

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.