Rmu_sc0006346.1_g000001

Vacuolar protein sorting-associated protein

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0006346.1
Physical Location & Seq
Forward (+)
258 .. 4137
3880 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0006346.1_g000001.1.cds

Sequence Viewer

Length: 1599 bp
atgctactggacggaatcgaagacgaggacaaatggctcgcagaaggcatcgccggcattcaacaccacgccttctacatgcatcgagctctggacgctaacaatctcagagacgctctcaaatactcggctcagatgctctccgagctccgaacctcgaggctctcgcctcacaaatactacgagctctatatgcgagcgttcgatgagttgaggaagctggagatgttcttcaaggacgagagcaggcatggcgtttcgatcattgatctctacgagcttgttcagcacgctggcaacattctaccgagattgtatctcctatgtacggtaggatctgtgtacattaaatcaaaggaagcacctgccaaagacgtgcttaaagaccttgtggaaatgtgtcgtgctgttcaacatccgattcgggggctctttctgaggagttacctttctcaagtcagtagagataagttacctgatcttggttccgagtatgaaggaggttctgacactgttacggatgccgtagattttgtgctacaaaattttacagagatgaataagctttgggttcgaatgcagtatcagggacctggtcgggcgagagagaagcatgaaaaggaaagaagcgaacttcgtgatctagtagggaaaaatctccttgttctcagtcagatagagggtgtggaactccaaatgtacaaagacactgttcttcccagagtattagagcaggttatcaactgtaaagatgagctggcccagtattatttgatggattgcctgatccaggtctttccggatgagtaccacttgcagacactggagacattattgggtgcttgcccccagcttcagccaacagtggatatcaagacagtgctatctcaattaatggacaggttatcaaattatgctgcttcaagtgcagatgtattacccgaatttcttcaagtcgaagctttcgctaaattaagtagtgctattgggagggtgatagaagcacaagttgacatgcctattgttggagccatatctttgtacgtctctcttcttacattcacactccgtgttcatcccgatcgtctagattatgtggatcaagtactgggagcatgtgttaggaagctaccgggaaacactaaggttgaagacaagagagccataaagcaggttgtcgcactattaagtgctcctttggaaaagtacaatgacattgtcacagccctcacactttctaattatcctcgagttatggatcaccttgataatggaacaaataaagtcatggcaatggttatcattcaaagcattatgaaaaacgactcttgtatctccactgctgataaggtggaggtattgtttgaattaatcaaagggctgatcaaggatttggatggtacttctgatgatgagcttgacgaggaggattttcatgatgagcaaaattctgttgctcgccttatacacatgctttataatgatgatccagaagaaatgttaaagactcatgagagcatgataatcctaagatccctttgtgagtcagtctcctttgaacagataatcctgggagcccatatcccattggctttctga

Protein Analysis

532

Amino Acids

60.52

Weight (kDa)

5.02

Isoelectric Point (pI)

39.03

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0012830)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1479
AarI CACCTGC 1 cut(s) 373
AbsI CCTCGAGG 1 cut(s) 157
Acc36I ACCTGC 3 cut(s) 373, 724, 1162
AccIII TCCGGA 1 cut(s) 799
AclWI GGATC 6 cut(s) 343, 781, 1107, 1266, 1481, 1527
AcsI RAATTY 3 cut(s) 544, 944, 1447
AcuI CTGAAG 1 cut(s) 839
AdeI CACNNNGTG 1 cut(s) 1070
AfaI GTAC 8 cut(s) 328, 344, 701, 809, 1043, 1107, 1208, 1402
AfiI CCNNNNNNNGG 5 cut(s) 328, 425, 482, 790, 1025
AgsI TTSAA 9 cut(s) 62, 235, 413, 924, 953, 1151, 1307, 1367, 1559
AjiI CACGTC 1 cut(s) 376
AjnI CCWGG 3 cut(s) 592, 789, 1569
AloI GAACNNNNNNTCC 2 cut(s) 1551, 1583
Alw21I GWGCWC 4 cut(s) 91, 150, 189, 1195
Alw26I GTCTC 4 cut(s) 105, 821, 1051, 1555
AlwI GGATC 6 cut(s) 343, 781, 1107, 1266, 1481, 1527
AlwNI CAGNNNCTG 1 cut(s) 823
Ama87I CYCGRG 2 cut(s) 157, 1248
Aor13HI TCCGGA 1 cut(s) 799
AoxI GGCC 1 cut(s) 759
ApeKI GCWGC 1 cut(s) 917
ApoI RAATTY 3 cut(s) 544, 944, 1447
AseI ATTAAT 2 cut(s) 893, 1370
Asp700I GAANNNNTTC 1 cut(s) 948
AspS9I GGNCC 2 cut(s) 590, 760
AsuC2I CCSGG 1 cut(s) 1134
AsuHPI GGTGA 2 cut(s) 1006, 1253
AsuII TTCGAA 1 cut(s) 574
AvaI CYCGRG 2 cut(s) 157, 1248
AvaII GGWCC 1 cut(s) 590
BaeI ACNNNNGTAYC 2 cut(s) 1315, 1348
BanII GRGCYC 5 cut(s) 91, 150, 189, 432, 1579
BbsI GAAGAC 2 cut(s) 27, 1158
Bbv12I GWGCWC 4 cut(s) 91, 150, 189, 1195
BbvI GCAGC 1 cut(s) 904
BccI CCATC 2 cut(s) 769, 1391
BceAI ACGGC 1 cut(s) 509
BciT130I CCWGG 3 cut(s) 594, 791, 1571
BclI TGATCA 1 cut(s) 1383
BcnI CCSGG 1 cut(s) 1134
BcoDI GTCTC 4 cut(s) 105, 821, 1051, 1555
BfaI CTAG 2 cut(s) 644, 1088
BfuAI ACCTGC 3 cut(s) 373, 724, 1162
BisI GCNGC 1 cut(s) 918
BlsI GCNGC 1 cut(s) 919
BmcAI AGTACT 1 cut(s) 1107
Bme1390I CCNGG 4 cut(s) 594, 791, 1134, 1571
Bme18I GGWCC 1 cut(s) 590
BmeT110I CYCGRG 2 cut(s) 157, 1248
BmgBI CACGTC 1 cut(s) 376
BmgT120I GGNCC 2 cut(s) 590, 760
BmiI GGNNCC 4 cut(s) 487, 591, 1030, 1576
BmrFI CCNGG 4 cut(s) 594, 791, 1134, 1571
BmrI ACTGGG 2 cut(s) 757, 1118
BmsI GCATC 4 cut(s) 57, 91, 126, 511
BmuI ACTGGG 2 cut(s) 757, 1118
BpiI GAAGAC 2 cut(s) 27, 1158
BplI GAGNNNNNCTC 4 cut(s) 102, 134, 1535, 1567
BpmI CTGGAG 2 cut(s) 242, 845
Bpu14I TTCGAA 1 cut(s) 574
BpuEI CTTGAG 1 cut(s) 438
BpuMI CCSGG 1 cut(s) 1134
BsaJI CCNNGG 1 cut(s) 1570
BsaWI WCCGGW 1 cut(s) 799
BsaXI ACNNNNNCTCC 4 cut(s) 1104, 1134, 1346, 1376
Bsc4I CCNNNNNNNGG 5 cut(s) 328, 425, 482, 790, 1025
Bse118I RCCGGY 1 cut(s) 53
Bse1I ACTGG 4 cut(s) 12, 763, 828, 1113
Bse3DI GCAATG 1 cut(s) 1299
BseAI TCCGGA 1 cut(s) 799
BseBI CCWGG 3 cut(s) 594, 791, 1571
BseDI CCNNGG 1 cut(s) 1570
BseGI GGATG 5 cut(s) 415, 526, 808, 1075, 1402
BseLI CCNNNNNNNGG 5 cut(s) 328, 425, 482, 790, 1025
BseMI GCAATG 1 cut(s) 1299
BseMII CTCAG 4 cut(s) 121, 146, 428, 682
BseNI ACTGG 4 cut(s) 12, 763, 828, 1113
BseRI GAGGAG 2 cut(s) 454, 1439
BseXI GCAGC 1 cut(s) 904
BseYI CCCAGC 1 cut(s) 849
BsgI GTGCAG 1 cut(s) 948
Bsh1285I CGRYCG 1 cut(s) 1084
BshFI GGCC 1 cut(s) 761
BsiEI CGRYCG 1 cut(s) 1084
BsiHKAI GWGCWC 4 cut(s) 91, 150, 189, 1195
BsiHKCI CYCGRG 2 cut(s) 157, 1248
BsiSI CCGG 3 cut(s) 54, 800, 1133
BslFI GGGAC 1 cut(s) 603
BslI CCNNNNNNNGG 5 cut(s) 328, 425, 482, 790, 1025
BsmAI GTCTC 4 cut(s) 105, 821, 1051, 1555
BsmBI CGTCTC 2 cut(s) 105, 1051
BsmFI GGGAC 1 cut(s) 603
BsmI GAATGC 2 cut(s) 57, 582
BsnI GGCC 1 cut(s) 761
BsoBI CYCGRG 2 cut(s) 157, 1248
Bsp119I TTCGAA 1 cut(s) 574
Bsp1286I GDGCHC 6 cut(s) 91, 150, 189, 432, 1195, 1579
Bsp13I TCCGGA 1 cut(s) 799
Bsp1407I TGTACA 2 cut(s) 342, 699
BspANI GGCC 1 cut(s) 761
BspCNI CTCAG 4 cut(s) 120, 145, 429, 681
BspEI TCCGGA 1 cut(s) 799
BspHI TCATGA 2 cut(s) 1435, 1510
BspLI GGNNCC 4 cut(s) 487, 591, 1030, 1576
BspMI ACCTGC 3 cut(s) 373, 724, 1162
BspPI GGATC 6 cut(s) 343, 781, 1107, 1266, 1481, 1527
BspT104I TTCGAA 1 cut(s) 574
BsrDI GCAATG 1 cut(s) 1299
BsrFI RCCGGY 1 cut(s) 53
BsrGI TGTACA 2 cut(s) 342, 699
BsrI ACTGG 4 cut(s) 12, 763, 828, 1113
BssAI RCCGGY 1 cut(s) 53
BssECI CCNNGG 1 cut(s) 1570
Bst2UI CCWGG 3 cut(s) 594, 791, 1571
Bst4CI ACNGT 6 cut(s) 331, 514, 712, 746, 865, 880
Bst6I CTCTTC 1 cut(s) 1056
BstAUI TGTACA 2 cut(s) 342, 699
BstBI TTCGAA 1 cut(s) 574
BstC8I GCNNGC 9 cut(s) 39, 55, 198, 248, 291, 295, 759, 844, 1459
BstDEI CTNAG 6 cut(s) 107, 132, 437, 668, 1143, 1529
BstENI CCTNNNNNAGG 1 cut(s) 788
BstF5I GGATG 5 cut(s) 415, 526, 808, 1075, 1402
BstMAI GTCTC 4 cut(s) 105, 821, 1051, 1555
BstMCI CGRYCG 1 cut(s) 1084
BstMWI GCNNNNNNNGC 7 cut(s) 54, 95, 145, 193, 252, 286, 926
BstNI CCWGG 3 cut(s) 594, 791, 1571
BstNSI RCATGY 4 cut(s) 82, 1018, 1119, 1474
BstSCI CCNGG 4 cut(s) 592, 789, 1132, 1569
BstV1I GCAGC 1 cut(s) 904
BstV2I GAAGAC 2 cut(s) 27, 1158
BstX2I RGATCY 2 cut(s) 335, 1532
BstYI RGATCY 2 cut(s) 335, 1532
BsuRI GGCC 1 cut(s) 761
BtgZI GCGATG 1 cut(s) 34
BtrI CACGTC 1 cut(s) 376
BtsCI GGATG 5 cut(s) 415, 526, 808, 1075, 1402
BtsI GCAGTG 1 cut(s) 1338
BtsIMutI CAGTG 6 cut(s) 510, 708, 821, 870, 885, 1338
BveI ACCTGC 3 cut(s) 373, 724, 1162
Cac8I GCNNGC 9 cut(s) 39, 55, 198, 248, 291, 295, 759, 844, 1459
CaiI CAGNNNCTG 1 cut(s) 823
CciI TCATGA 2 cut(s) 1435, 1510
Cfr10I RCCGGY 1 cut(s) 53
Cfr13I GGNCC 2 cut(s) 590, 760
CseI GACGC 2 cut(s) 104, 122
CsiI ACCWGGT 1 cut(s) 592
Csp6I GTAC 8 cut(s) 327, 343, 700, 808, 1042, 1106, 1207, 1401
CviQI GTAC 8 cut(s) 327, 343, 700, 808, 1042, 1106, 1207, 1401
DdeI CTNAG 6 cut(s) 107, 132, 437, 668, 1143, 1529
DraIII CACNNNGTG 1 cut(s) 1070
Eam1104I CTCTTC 1 cut(s) 1056
EarI CTCTTC 1 cut(s) 1056
Ecl136II GAGCTC 3 cut(s) 89, 148, 187
Eco24I GRGCYC 5 cut(s) 91, 150, 189, 432, 1579
Eco32I GATATC 1 cut(s) 871
Eco47I GGWCC 1 cut(s) 590
Eco53kI GAGCTC 3 cut(s) 89, 148, 187
Eco57I CTGAAG 1 cut(s) 839
Eco88I CYCGRG 2 cut(s) 157, 1248
EcoICRI GAGCTC 3 cut(s) 89, 148, 187
EcoNI CCTNNNNNAGG 1 cut(s) 788
EcoO109I RGGNCCY 1 cut(s) 590
EcoRII CCWGG 3 cut(s) 592, 789, 1569
EcoRV GATATC 1 cut(s) 871
EcoT22I ATGCAT 1 cut(s) 84
EcoT38I GRGCYC 5 cut(s) 91, 150, 189, 432, 1579
Esp3I CGTCTC 2 cut(s) 105, 1051
FalI AAGNNNNNCTT 4 cut(s) 363, 395, 1180, 1212
FaqI GGGAC 1 cut(s) 603
FbaI TGATCA 1 cut(s) 1383
Fnu4HI GCNGC 1 cut(s) 918
FokI GGATG 5 cut(s) 402, 533, 815, 1062, 1409
FriOI GRGCYC 5 cut(s) 91, 150, 189, 432, 1579
Fsp4HI GCNGC 1 cut(s) 918
FspBI CTAG 2 cut(s) 644, 1088
GluI GCNGC 1 cut(s) 918
GsaI CCCAGC 1 cut(s) 853
GsuI CTGGAG 2 cut(s) 242, 845
HaeIII GGCC 1 cut(s) 761
HapII CCGG 3 cut(s) 54, 800, 1133
HgaI GACGC 2 cut(s) 104, 122
HincII GTYRAC 1 cut(s) 1012
HindII GTYRAC 1 cut(s) 1012
HindIII AAGCTT 2 cut(s) 563, 960
HinfI GANTC 5 cut(s) 15, 421, 1325, 1507, 1544
HpaII CCGG 3 cut(s) 54, 800, 1133
HphI GGTGA 2 cut(s) 1006, 1253
Hpy166II GTNNAC 2 cut(s) 343, 1012
Hpy188III TCNNGA 9 cut(s) 92, 638, 800, 874, 1079, 1088, 1436, 1490, 1511
Hpy8I GTNNAC 2 cut(s) 343, 1012
HpyAV CCTTC 3 cut(s) 38, 82, 491
HpyCH4III ACNGT 6 cut(s) 331, 514, 712, 746, 865, 880
HpyCH4IV ACGT 2 cut(s) 375, 1044
HpyCH4V TGCA 4 cut(s) 82, 580, 817, 929
HpyF10VI GCNNNNNNNGC 7 cut(s) 54, 95, 145, 193, 252, 286, 926
HpyF3I CTNAG 6 cut(s) 107, 132, 437, 668, 1143, 1529
HpySE526I ACGT 2 cut(s) 375, 1044
Kpn2I TCCGGA 1 cut(s) 799
KroI GCCGGC 1 cut(s) 53
KroNI GCCGGC 1 cut(s) 55
Ksp22I TGATCA 1 cut(s) 1383
LmnI GCTCC 5 cut(s) 153, 1028, 1112, 1198, 1574
Lsp1109I GCAGC 1 cut(s) 904
LweI GCATC 4 cut(s) 57, 91, 126, 511
MabI ACCWGGT 1 cut(s) 592
MaeI CTAG 2 cut(s) 644, 1088
MaeII ACGT 2 cut(s) 375, 1044
MaeIII GTNAC 4 cut(s) 443, 471, 514, 1219
MboII GAAGA 7 cut(s) 32, 223, 707, 941, 1043, 1163, 1505
MflI RGATCY 2 cut(s) 335, 1532
MhlI GDGCHC 6 cut(s) 91, 150, 189, 432, 1195, 1579
MluCI AATT 8 cut(s) 544, 890, 910, 944, 971, 1240, 1367, 1447
MlyI GAGTC 3 cut(s) 1319, 1501, 1553
MmeI TCCRAC 1 cut(s) 1006
Mph1103I ATGCAT 1 cut(s) 84
MroI TCCGGA 1 cut(s) 799
MroNI GCCGGC 1 cut(s) 53
MroXI GAANNNNTTC 1 cut(s) 948
MseI TTAA 7 cut(s) 348, 381, 893, 974, 1187, 1370, 1502
MslI CAYNNNNRTG 1 cut(s) 1292
MspI CCGG 3 cut(s) 54, 800, 1133
MspR9I CCNGG 4 cut(s) 594, 791, 1134, 1571
Mva1269I GAATGC 2 cut(s) 57, 582
MvaI CCWGG 3 cut(s) 594, 791, 1571
MwoI GCNNNNNNNGC 7 cut(s) 54, 95, 145, 193, 252, 286, 926
NaeI GCCGGC 1 cut(s) 55
NciI CCSGG 1 cut(s) 1134
NgoMIV GCCGGC 1 cut(s) 53
NlaIV GGNNCC 4 cut(s) 487, 591, 1030, 1576
NmeAIII GCCGAG 1 cut(s) 107
NmuCI GTSAC 1 cut(s) 1219
NsiI ATGCAT 1 cut(s) 84
NspI RCATGY 4 cut(s) 82, 1018, 1119, 1474
NspV TTCGAA 1 cut(s) 574
PaeR7I CTCGAG 2 cut(s) 157, 1248
PagI TCATGA 2 cut(s) 1435, 1510
PaqCI CACCTGC 1 cut(s) 373
PctI GAATGC 2 cut(s) 57, 582
PdiI GCCGGC 1 cut(s) 55
PdmI GAANNNNTTC 1 cut(s) 948
PfeI GAWTC 2 cut(s) 15, 421
PflFI GACNNNGTC 2 cut(s) 594, 1217
PkrI GCNGC 1 cut(s) 919
Ple19I CGATCG 1 cut(s) 1084
PleI GAGTC 3 cut(s) 1319, 1501, 1552
PpsI GAGTC 3 cut(s) 1319, 1501, 1552
PpuMI RGGWCCY 1 cut(s) 590
PshBI ATTAAT 2 cut(s) 893, 1370
PsiI TTATAA 1 cut(s) 1479
Psp124BI GAGCTC 3 cut(s) 91, 150, 189
Psp5II RGGWCCY 1 cut(s) 590
Psp6I CCWGG 3 cut(s) 592, 789, 1569
PspFI CCCAGC 1 cut(s) 849
PspGI CCWGG 3 cut(s) 592, 789, 1569
PspN4I GGNNCC 4 cut(s) 487, 591, 1030, 1576
PspPI GGNCC 2 cut(s) 590, 760
PspPPI RGGWCCY 1 cut(s) 590
PspXI VCTCGAGB 2 cut(s) 157, 1248
PstNI CAGNNNCTG 1 cut(s) 823
PsuI RGATCY 2 cut(s) 335, 1532
PsyI GACNNNGTC 2 cut(s) 594, 1217
PvuI CGATCG 1 cut(s) 1084
RsaI GTAC 8 cut(s) 328, 344, 701, 809, 1043, 1107, 1208, 1402
RsaNI GTAC 8 cut(s) 327, 343, 700, 808, 1042, 1106, 1207, 1401
RseI CAYNNNNRTG 1 cut(s) 1292
SacI GAGCTC 3 cut(s) 91, 150, 189
SaqAI TTAA 7 cut(s) 348, 381, 893, 974, 1187, 1370, 1502
SatI GCNGC 1 cut(s) 918
Sau96I GGNCC 2 cut(s) 590, 760
ScaI AGTACT 1 cut(s) 1107
SchI GAGTC 3 cut(s) 1319, 1501, 1553
ScrFI CCNGG 4 cut(s) 594, 791, 1134, 1571
SduI GDGCHC 6 cut(s) 91, 150, 189, 432, 1195, 1579
SexAI ACCWGGT 1 cut(s) 592
SfaNI GCATC 4 cut(s) 57, 91, 126, 511
Sfr274I CTCGAG 2 cut(s) 157, 1248
SfuI TTCGAA 1 cut(s) 574
SinI GGWCC 1 cut(s) 590
SlaI CTCGAG 2 cut(s) 157, 1248
SmiMI CAYNNNNRTG 1 cut(s) 1292
SmlI CTYRAG 3 cut(s) 157, 453, 1248
SmoI CTYRAG 3 cut(s) 157, 453, 1248
Sse9I AATT 8 cut(s) 544, 890, 910, 944, 971, 1240, 1367, 1447
SspMI CTAG 2 cut(s) 644, 1088
SstI GAGCTC 3 cut(s) 91, 150, 189
StyD4I CCNGG 4 cut(s) 592, 789, 1132, 1569
TaaI ACNGT 6 cut(s) 331, 514, 712, 746, 865, 880
TaiI ACGT 2 cut(s) 378, 1047
TaqI TCGA 8 cut(s) 18, 85, 158, 204, 260, 574, 957, 1249
TasI AATT 8 cut(s) 544, 890, 910, 944, 971, 1240, 1367, 1447
TatI WGTACW 4 cut(s) 342, 699, 1105, 1206
TfiI GAWTC 2 cut(s) 15, 421
Tru1I TTAA 7 cut(s) 348, 381, 893, 974, 1187, 1370, 1502
Tru9I TTAA 7 cut(s) 348, 381, 893, 974, 1187, 1370, 1502
TscAI CASTG 6 cut(s) 517, 715, 828, 870, 885, 1345
TseFI GTSAC 1 cut(s) 1219
TseI GCWGC 1 cut(s) 917
Tsp45I GTSAC 1 cut(s) 1219
TspDTI ATGAA 6 cut(s) 510, 572, 630, 1064, 1331, 1424
TspGWI ACGGA 3 cut(s) 27, 533, 1058
TspRI CASTG 6 cut(s) 517, 715, 828, 870, 885, 1345
Tth111I GACNNNGTC 2 cut(s) 594, 1217
VpaK11BI GGWCC 1 cut(s) 590
VspI ATTAAT 2 cut(s) 893, 1370
XagI CCTNNNNNAGG 1 cut(s) 788
XapI RAATTY 3 cut(s) 544, 944, 1447
XbaI TCTAGA 1 cut(s) 1087
XceI RCATGY 4 cut(s) 82, 1018, 1119, 1474
XhoI CTCGAG 2 cut(s) 157, 1248
XmnI GAANNNNTTC 1 cut(s) 948
XspI CTAG 2 cut(s) 644, 1088
ZrmI AGTACT 1 cut(s) 1107
Zsp2I ATGCAT 1 cut(s) 84
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.