Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0006210

Physical Location & Seq

Genomic Coordinates Forward (+)

63739148 .. 63743647

Gene Structure 4500 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ27353

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2298 bp

ATGGTGTTTAATCGAATTGCCAATTTCTTTGCTTCTCTATCGAGTCGTTGGTCTAGCCCTCAGGGTGGTTCCGCTGTATCGCCTCCCAAATCTGCTGCTTTTGCCTTTGCAAACACCGCACGCAACAAGAACCTTCTCAGACTCTCATCGTCTCTCCAGGATTTCTCATCTTATAGCCAGCTTGATATCGAAGATCCCAATATCGCAACTGTGACACATTCGAAACCCCCTCCTCATTCATTGCAGAGAGAAACTGCTGCTGCCTCCAGCTTTTCAAAGGAGAAATCACTGCCAGGAGGAGGAGGAGGAGGAGCCCCATTTTCGCGCAACAAGTGGGTACGAGCCTTCATGTTTCTTTGCTGTGTTTTGTTGGTTGGTTTTCTAGTTTATTTGGTTTCCATGTTGGTTTATTCGTACTGGTCTAAAGGAGAGCCCAAATTCTATATTGTGCTGGATTGTGGAAGTACTGGGACTAGAGTTTATGTATATCAGGCAACCTTGGACAACGAGAAAGATAACAGTTTTCCGATTGTCATGAAGTCATTAACAGAAGGTCTTCAAAGAAAACCTAAGGCTCACACAGGGCGAGCTTATGATCGGATGGAAACTGAGCCTGGGCTCGACAAGTTGGTGCACAATGTCTCAGGGTTGAAGGTTGCAATAAAACCACTTGTTCAATGGGCAGAGAAGCAAATCCCAAAGAATGCACACAAGACAACCTCACTCTTCCTCTATGCAACTGCAGGGGTTCGTAGGCTGCCGAGTAATGATTCAAAATGGCTTCTAGATAATGCATGGTCTATACTCAAGAGTTCACCTTTCTTGTGCCAAAGAGATTGGGTTAGGACTATCAGTGGCCTGGAAGAAGCTTACTTTGGCTGGATAGCCCTTAACCATCATAGGGGTATGTTTGGGGCGGGACCTAGAAAGCCAACATTTGGTTCGCTTGACTTGGGTGGTTCATCACTGCAGGTTACATTTGAGAGTAATGAACATGTGCAAAAAGACACCGGTTTAAACATTAGAATTGGGGCTGTGAACCATCATCTCACTGCGTATTCTCTCCCTGGTTATGGTTTAAATGATGCGTTTGACAAGTCTGTGGGTCGTCTCTTCGAGAGGCTTCCAGAAGTCAATAAGACAGAACTAGTGAATGGGAAGGGAGAACTTAAGCATCCTTGCCTGCAGTCTGGGTATAAGGAGCAATACATTTGCTCTCAATGTGTTTCGAAATTCCAAGAAGGTGGAAGCCCTGTGATTGCAAAAAAGAGTTTGGGCAAAGGAGGAAGATCAGGGGTTTCTCTGACGCTCATCGGTGCTCCAAATTGGGAGGAGTGTGGTAAACTAGCAAGAGTTGCTGTTAATTTATCGGAATGGTCCAATATAACACCTGCACTCGATTGTGACGTGCAACCTTGTGCTCTTCCAGATGGTTTACCCCGACCTTATGGAAATTTTTATGCAATTTCAGGATTTTTTGTGGTTTATCGGTTTTTCAATTTGACTTCTGAGTCGTCACTGGATGATGTTTTGGAAAAGGGTCGGCAGTTTTGTGAAAGAACTTGGGAAGCTGCAAAGAAGAGTGTTGCTCCTCAGCCTTTCATTGAACAGTACTGTTTTAGGGCACCATATATTGCATTCTTGTTGAGGGAGGGCTTGCACATTATAGACAATCAAATCACCATTGGTTCTGGAAGTATCACGTGGACACAGGGGGTTGCTCTGCTGGAAGCTGGAAAGACACTCTCGACCGGACTGGGGTTTCGCAGTTACGAAGTACTCCGGATGAAAATAAACCCATTATTTCTTCTTTCAGTTTTGTTTATATCATTGATTTTACTCCTTTGTGCATTATCATGTATTGCCAATTGGATGCCAAAAATTTTCTGGAGGCCATATCTCCCGCTGTTTTGGACCAATAATGCCTCTTCTGCATCTGGTATTCCATCTCCTTTCCGGTTCCAGCGCTGGAGTCCTATTATTCCCGGGGATGGAAGAGTAAAGACGCCTCTAAGTCCAACAATTGCAGGTGGAGTCCAACAAAGACCATTTGGATTGGGACATGGTCTCAACAACAGTGGTGGAATCCAACTAATGGAGTCTTCCTTGTACCCATCAAGTAGCAGCATCTCCCATAGTTATTCGTCAAATAGCCTGGGCCAGATGCAATTTGACAGTAGTAGCATGGGCTCCTTCTGGTCTCCTCACAGATCTCAGATGCGTCTTCAAAGCAGGCGATCACAGTCTCGAGAAGACCTCAATTCTTCTCTGACTGAGGCACACATGGCAAAAGTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0005575 GO:0005623 GO:0005886 GO:0005887 GO:0006139 GO:0006725 GO:0006807 GO:0006950 GO:0007155 GO:0007275 GO:0007596 GO:0007599 GO:0008150 GO:0008152 GO:0009056 GO:0009555 GO:0009611 GO:0009653 GO:0009791 GO:0009900 GO:0009901 GO:0009908 GO:0009987 GO:0010208 GO:0010584 GO:0010927 GO:0016020 GO:0016021 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0017110 GO:0017111 GO:0019439 GO:0022414 GO:0022607 GO:0022610 GO:0030198 GO:0031224 GO:0031226 GO:0032501 GO:0032502 GO:0032504 GO:0032989 GO:0034641 GO:0034655 GO:0034656 GO:0042060 GO:0043062 GO:0044085 GO:0044237 GO:0044238 GO:0044248 GO:0044270 GO:0044281 GO:0044282 GO:0044425 GO:0044459 GO:0044464 GO:0045229 GO:0046483 GO:0046700 GO:0048229 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048608 GO:0048609 GO:0048646 GO:0048653 GO:0048731 GO:0048827 GO:0048856 GO:0048869 GO:0050817 GO:0050878 GO:0050896 GO:0055086 GO:0061458 GO:0065007 GO:0065008 GO:0071704 GO:0071840 GO:0071944 GO:0085029 GO:0090567 GO:0099402 GO:1901360 GO:1901361 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko00230 ko00240 ko05169 map00230 map00240 map05169

Pfam Domains

Protein Families

GDA1_CD39

Protein Analysis

765

Amino Acids

84.47

Weight (kDa)

9.37

Isoelectric Point (pI)

47.3

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GDA1_CD39	PF01150	142 - 575	1.6e-52	GDA1/CD39 (nucleoside phosphatase) family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0006210)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G19180 AT4G19180 AT4G19180
fragaria_vesca	FvH4_2g37270 FvH4_2g37270 FvH4_2g37270 FvH4_2g37270 FvH4_2g37270 FvH4_2g37270
malus_domestica	MD08G1000700.v1.1
prunus_persica	Prupe.1G352700_v2.0.a1 Prupe.1G352700_v2.0.a1 Prupe.1G352700_v2.0.a1 Prupe.1G352700_v2.0.a1
pyrus_communis	pycom08g00020
rosa_chinensis	RchiOBHm_Chr6g0304431
rosa_laevigata	RLG00000010979
rosa_multiflora	Rmu_ssc0000218.1_g000051
rosa_roxburghii	Rroxscaffold_7G00163740
rosa_rugosa	Rorug06G0331500 Rorug06G0331600 Rorug06G0331700
rosa_samantha	Rh6AG444400 Rh6BG458000 Rh6CG457200 Rh6DG443900
rosa_wichuraiana	Rw6G038580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	2 cut(s)	1399, 2018
AasI	GACNNNNNNGTC	1 cut(s)	1510
Acc36I	ACCTGC	3 cut(s)	961, 1399, 2018
AccB1I	GGYRCC	1 cut(s)	1624
AccB7I	CCANNNNNTGG	2 cut(s)	938, 2095
AccII	CGCG	1 cut(s)	325
AccIII	TCCGGA	1 cut(s)	1782
AciI	CCGC	4 cut(s)	72, 117, 917, 1904
AclWI	GGATC	1 cut(s)	188
AcsI	RAATTY	4 cut(s)	437, 1232, 1453, 1881
AcvI	CACGTG	1 cut(s)	1704
AcyI	GRCGYC	1 cut(s)	2006
AfaI	GTAC	6 cut(s)	339, 416, 466, 1613, 1779, 2111
AfeI	AGCGCT	1 cut(s)	1967
AfiI	CCNNNNNNNGG	8 cut(s)	65, 299, 901, 938, 1073, 1758, 1991, 2095
AflII	CTTAAG	1 cut(s)	1169
AflIII	ACRYGT	1 cut(s)	994
AgeI	ACCGGT	1 cut(s)	1010
AgsI	TTSAA	8 cut(s)	276, 560, 652, 677, 774, 1498, 1607, 2228
AhlI	ACTAGT	1 cut(s)	1147
AjiI	CACGTC	1 cut(s)	1408
AjnI	CCWGG	6 cut(s)	156, 292, 613, 858, 1066, 2154
AjuI	GAANNNNNNNTTGG	4 cut(s)	858, 890, 925, 957
AluBI	AGCT	6 cut(s)	181, 270, 590, 869, 1571, 1733
AluI	AGCT	6 cut(s)	181, 270, 590, 869, 1571, 1733
Alw21I	GWGCWC	3 cut(s)	636, 1321, 1423
Alw26I	GTCTC	6 cut(s)	156, 646, 1115, 2072, 2205, 2250
Alw44I	GTGCAC	1 cut(s)	632
AlwI	GGATC	1 cut(s)	188
Ama87I	CYCGRG	2 cut(s)	1985, 2247
Aor13HI	TCCGGA	1 cut(s)	1782
Aor51HI	AGCGCT	1 cut(s)	1967
AoxI	GGCC	3 cut(s)	856, 1892, 2158
ApaLI	GTGCAC	1 cut(s)	632
ApeKI	GCWGC	6 cut(s)	95, 257, 260, 757, 1571, 2124
ApoI	RAATTY	4 cut(s)	437, 1232, 1453, 1881
ArsI	GACNNNNNNTTYG	2 cut(s)	1746, 1778
AsiGI	ACCGGT	1 cut(s)	1010
Asp700I	GAANNNNTTC	1 cut(s)	555
AspLEI	GCGC	2 cut(s)	327, 1968
AspS9I	GGNCC	4 cut(s)	920, 1377, 1914, 2158
AsuC2I	CCSGG	2 cut(s)	1986, 1987
AsuHPI	GGTGA	2 cut(s)	807, 1672
AsuII	TTCGAA	2 cut(s)	221, 1229
AvaI	CYCGRG	2 cut(s)	1985, 2247
AvaII	GGWCC	3 cut(s)	920, 1377, 1914
AxyI	CCTNAGG	2 cut(s)	60, 570
BaeGI	GKGCMC	2 cut(s)	636, 1627
BanI	GGYRCC	1 cut(s)	1624
BanII	GRGCYC	4 cut(s)	316, 435, 621, 2192
BbrPI	CACGTG	1 cut(s)	1704
BbsI	GAAGAC	4 cut(s)	548, 2094, 2216, 2259
Bbv12I	GWGCWC	3 cut(s)	636, 1321, 1423
BbvCI	CCTCAGC	1 cut(s)	1593
BbvI	GCAGC	6 cut(s)	82, 244, 247, 744, 1558, 2136
BccI	CCATC	7 cut(s)	595, 903, 1050, 1424, 1954, 1985, 2122
BciT130I	CCWGG	6 cut(s)	158, 294, 615, 860, 1068, 2156
BcnI	CCSGG	2 cut(s)	1986, 1987
BcoDI	GTCTC	6 cut(s)	156, 646, 1115, 2072, 2205, 2250
BcuI	ACTAGT	1 cut(s)	1147
BfaI	CTAG	7 cut(s)	54, 383, 474, 785, 924, 1148, 1346
BfmI	CTRYAG	3 cut(s)	741, 968, 1184
BfoI	RGCGCY	1 cut(s)	1969
BfrI	CTTAAG	1 cut(s)	1169
BfuAI	ACCTGC	3 cut(s)	961, 1399, 2018
BglII	AGATCT	1 cut(s)	2210
BisI	GCNGC	6 cut(s)	96, 258, 261, 758, 1572, 2125
BlsI	GCNGC	6 cut(s)	97, 259, 262, 759, 1573, 2126
BmcAI	AGTACT	3 cut(s)	466, 1613, 1779
Bme1390I	CCNGG	8 cut(s)	158, 294, 615, 860, 1068, 1986, 1987, 2156
Bme18I	GGWCC	3 cut(s)	920, 1377, 1914
BmeT110I	CYCGRG	2 cut(s)	1985, 2247
BmgBI	CACGTC	1 cut(s)	1408
BmgT120I	GGNCC	4 cut(s)	920, 1377, 1914, 2158
BmiI	GGNNCC	6 cut(s)	70, 313, 921, 1626, 1961, 2191
BmrFI	CCNGG	8 cut(s)	158, 294, 615, 860, 1068, 1986, 1987, 2156
BmrI	ACTGGG	2 cut(s)	477, 1766
BmsI	GCATC	7 cut(s)	1075, 1183, 1863, 1943, 2136, 2154, 2208
BmuI	ACTGGG	2 cut(s)	477, 1766
BpiI	GAAGAC	4 cut(s)	548, 2094, 2216, 2259
BplI	GAGNNNNNCTC	4 cut(s)	1573, 1605, 2241, 2273
BpmI	CTGGAG	4 cut(s)	140, 250, 1909, 1990
Bpu10I	CCTNAGC	1 cut(s)	1593
Bpu14I	TTCGAA	2 cut(s)	221, 1229
BpuEI	CTTGAG	1 cut(s)	791
BpuMI	CCSGG	2 cut(s)	1986, 1987
BsaAI	YACGTR	1 cut(s)	1704
BsaHI	GRCGYC	1 cut(s)	2006
BsaI	GGTCTC	2 cut(s)	2072, 2205
BsaJI	CCNNGG	6 cut(s)	498, 614, 1066, 1985, 1986, 2155
BsaWI	WCCGGW	4 cut(s)	1010, 1751, 1782, 1956
Bsc4I	CCNNNNNNNGG	8 cut(s)	65, 299, 901, 938, 1073, 1758, 1991, 2095
Bse118I	RCCGGY	1 cut(s)	1010
Bse1I	ACTGG	4 cut(s)	422, 472, 1524, 1761
Bse21I	CCTNAGG	2 cut(s)	60, 570
Bse3DI	GCAATG	1 cut(s)	239
BseAI	TCCGGA	1 cut(s)	1782
BseBI	CCWGG	6 cut(s)	158, 294, 615, 860, 1068, 2156
BseDI	CCNNGG	6 cut(s)	498, 614, 1066, 1985, 1986, 2155
BseGI	GGATG	6 cut(s)	606, 1174, 1528, 1791, 1878, 1996
BseLI	CCNNNNNNNGG	8 cut(s)	65, 299, 901, 938, 1073, 1758, 1991, 2095
BseMI	GCAATG	1 cut(s)	239
BseMII	CTCAG	8 cut(s)	74, 151, 600, 657, 1500, 1607, 2228, 2265
BseNI	ACTGG	4 cut(s)	422, 472, 1524, 1761
BseRI	GAGGAG	9 cut(s)	222, 312, 315, 318, 321, 324, 1346, 1581, 2193
BseSI	GKGCMC	2 cut(s)	636, 1627
BseXI	GCAGC	6 cut(s)	82, 244, 247, 744, 1558, 2136
BsgI	GTGCAG	1 cut(s)	1377
Bsh1236I	CGCG	1 cut(s)	325
Bsh1285I	CGRYCG	1 cut(s)	1752
BshFI	GGCC	3 cut(s)	858, 1894, 2160
BshNI	GGYRCC	1 cut(s)	1624
BshTI	ACCGGT	1 cut(s)	1010
BsiEI	CGRYCG	1 cut(s)	1752
BsiHKAI	GWGCWC	3 cut(s)	636, 1321, 1423
BsiHKCI	CYCGRG	2 cut(s)	1985, 2247
BsiSI	CCGG	5 cut(s)	1011, 1752, 1783, 1957, 1986
BslFI	GGGAC	3 cut(s)	484, 933, 2073
BslI	CCNNNNNNNGG	8 cut(s)	65, 299, 901, 938, 1073, 1758, 1991, 2095
BsmAI	GTCTC	6 cut(s)	156, 646, 1115, 2072, 2205, 2250
BsmBI	CGTCTC	2 cut(s)	156, 1115
BsmFI	GGGAC	3 cut(s)	484, 933, 2073
BsmI	GAATGC	2 cut(s)	709, 1637
BsnI	GGCC	3 cut(s)	858, 1894, 2160
Bso31I	GGTCTC	2 cut(s)	2072, 2205
BsoBI	CYCGRG	2 cut(s)	1985, 2247
Bsp119I	TTCGAA	2 cut(s)	221, 1229
Bsp1286I	GDGCHC	8 cut(s)	316, 435, 621, 636, 1321, 1423, 1627, 2192
Bsp13I	TCCGGA	1 cut(s)	1782
Bsp143I	GATC	5 cut(s)	193, 595, 1289, 2210, 2237
BspACI	CCGC	4 cut(s)	72, 117, 917, 1904
BspANI	GGCC	3 cut(s)	858, 1894, 2160
BspCNI	CTCAG	8 cut(s)	73, 150, 601, 656, 1501, 1606, 2227, 2266
BspEI	TCCGGA	1 cut(s)	1782
BspFNI	CGCG	1 cut(s)	325
BspHI	TCATGA	1 cut(s)	534
BspLI	GGNNCC	6 cut(s)	70, 313, 921, 1626, 1961, 2191
BspMAI	CTGCAG	3 cut(s)	745, 972, 1188
BspMI	ACCTGC	3 cut(s)	961, 1399, 2018
BspPI	GGATC	1 cut(s)	188
BspQI	GCTCTTC	1 cut(s)	1428
BspT104I	TTCGAA	2 cut(s)	221, 1229
BspT107I	GGYRCC	1 cut(s)	1624
BspTI	CTTAAG	1 cut(s)	1169
BspTNI	GGTCTC	2 cut(s)	2072, 2205
BsrDI	GCAATG	1 cut(s)	239
BsrFI	RCCGGY	1 cut(s)	1010
BsrI	ACTGG	4 cut(s)	422, 472, 1524, 1761
BssAI	RCCGGY	1 cut(s)	1010
BssECI	CCNNGG	6 cut(s)	498, 614, 1066, 1985, 1986, 2155
BssMI	GATC	5 cut(s)	193, 595, 1289, 2210, 2237
BssNI	GRCGYC	1 cut(s)	2006
BssT1I	CCWWGG	1 cut(s)	498
Bst2UI	CCWGG	6 cut(s)	158, 294, 615, 860, 1068, 2156
Bst4CI	ACNGT	7 cut(s)	211, 521, 1611, 1616, 2078, 2177, 2244
Bst6I	CTCTTC	6 cut(s)	731, 1118, 1428, 1574, 1933, 1990
BstACI	GRCGYC	1 cut(s)	2006
BstAFI	CTTAAG	1 cut(s)	1169
BstAPI	GCANNNNNTGC	1 cut(s)	1355
BstBAI	YACGTR	1 cut(s)	1704
BstBI	TTCGAA	2 cut(s)	221, 1229
BstC8I	GCNNGC	6 cut(s)	121, 179, 588, 1184, 1658, 2234
BstF5I	GGATG	6 cut(s)	606, 1174, 1528, 1791, 1878, 1996
BstFNI	CGCG	1 cut(s)	325
BstH2I	RGCGCY	1 cut(s)	1969
BstHHI	GCGC	2 cut(s)	327, 1968
BstKTI	GATC	5 cut(s)	196, 598, 1292, 2213, 2240
BstMAI	GTCTC	6 cut(s)	156, 646, 1115, 2072, 2205, 2250
BstMBI	GATC	5 cut(s)	193, 595, 1289, 2210, 2237
BstMCI	CGRYCG	1 cut(s)	1752
BstMWI	GCNNNNNNNGC	5 cut(s)	101, 116, 1355, 1931, 2285
BstNI	CCWGG	6 cut(s)	158, 294, 615, 860, 1068, 2156
BstNSI	RCATGY	1 cut(s)	998
BstSCI	CCNGG	8 cut(s)	156, 292, 613, 858, 1066, 1984, 1985, 2154
BstSFI	CTRYAG	3 cut(s)	741, 968, 1184
BstSLI	GKGCMC	2 cut(s)	636, 1627
BstUI	CGCG	1 cut(s)	325
BstV1I	GCAGC	6 cut(s)	82, 244, 247, 744, 1558, 2136
BstV2I	GAAGAC	4 cut(s)	548, 2094, 2216, 2259
BstX2I	RGATCY	2 cut(s)	193, 2210
BstXI	CCANNNNNNTGG	1 cut(s)	1244
BstYI	RGATCY	2 cut(s)	193, 2210
Bsu36I	CCTNAGG	2 cut(s)	60, 570
BsuRI	GGCC	3 cut(s)	858, 1894, 2160
BtrI	CACGTC	1 cut(s)	1408
BtsCI	GGATG	6 cut(s)	606, 1174, 1528, 1791, 1878, 1996
BtsI	GCAGTG	3 cut(s)	287, 965, 1050
BtsIMutI	CAGTG	6 cut(s)	287, 859, 965, 1050, 1517, 2083
BveI	ACCTGC	3 cut(s)	961, 1399, 2018
Cac8I	GCNNGC	6 cut(s)	121, 179, 588, 1184, 1658, 2234
CciI	TCATGA	1 cut(s)	534
CfoI	GCGC	2 cut(s)	327, 1968
Cfr10I	RCCGGY	1 cut(s)	1010
Cfr13I	GGNCC	4 cut(s)	920, 1377, 1914, 2158
Cfr9I	CCCGGG	1 cut(s)	1985
CseI	GACGC	3 cut(s)	1315, 2014, 2210
Csp6I	GTAC	6 cut(s)	338, 415, 465, 1612, 1778, 2110
CspAI	ACCGGT	1 cut(s)	1010
CspCI	CAANNNNNGTGG	4 cut(s)	2059, 2062, 2094, 2097
CviAII	CATG	9 cut(s)	349, 400, 535, 795, 995, 1857, 2063, 2185, 2284
CviQI	GTAC	6 cut(s)	338, 415, 465, 1612, 1778, 2110
DpnI	GATC	5 cut(s)	195, 597, 1291, 2212, 2239
DpnII	GATC	5 cut(s)	193, 595, 1289, 2210, 2237
DraI	TTTAAA	2 cut(s)	1017, 1080
DrdI	GACNNNNNNGTC	1 cut(s)	1510
DseDI	GACNNNNNNGTC	1 cut(s)	1510
Eam1104I	CTCTTC	6 cut(s)	731, 1118, 1428, 1574, 1933, 1990
EarI	CTCTTC	6 cut(s)	731, 1118, 1428, 1574, 1933, 1990
Eco130I	CCWWGG	1 cut(s)	498
Eco24I	GRGCYC	4 cut(s)	316, 435, 621, 2192
Eco31I	GGTCTC	2 cut(s)	2072, 2205
Eco32I	GATATC	1 cut(s)	187
Eco47I	GGWCC	3 cut(s)	920, 1377, 1914
Eco47III	AGCGCT	1 cut(s)	1967
Eco72I	CACGTG	1 cut(s)	1704
Eco81I	CCTNAGG	2 cut(s)	60, 570
Eco88I	CYCGRG	2 cut(s)	1985, 2247
EcoO109I	RGGNCCY	1 cut(s)	920
EcoRII	CCWGG	6 cut(s)	156, 292, 613, 858, 1066, 2154
EcoRV	GATATC	1 cut(s)	187
EcoT14I	CCWWGG	1 cut(s)	498
EcoT22I	ATGCAT	1 cut(s)	796
EcoT38I	GRGCYC	4 cut(s)	316, 435, 621, 2192
ErhI	CCWWGG	1 cut(s)	498
Esp3I	CGTCTC	2 cut(s)	156, 1115
FaeI	CATG	9 cut(s)	352, 403, 538, 798, 998, 1860, 2066, 2188, 2287
FaqI	GGGAC	3 cut(s)	484, 933, 2073
FatI	CATG	9 cut(s)	348, 399, 534, 794, 994, 1856, 2062, 2184, 2283
FauI	CCCGC	2 cut(s)	910, 1911
Fnu4HI	GCNGC	6 cut(s)	96, 258, 261, 758, 1572, 2125
FokI	GGATG	6 cut(s)	613, 1161, 1535, 1798, 1885, 2003
FriOI	GRGCYC	4 cut(s)	316, 435, 621, 2192
Fsp4HI	GCNGC	6 cut(s)	96, 258, 261, 758, 1572, 2125
FspBI	CTAG	7 cut(s)	54, 383, 474, 785, 924, 1148, 1346
GlaI	GCGC	2 cut(s)	326, 1967
GluI	GCNGC	6 cut(s)	96, 258, 261, 758, 1572, 2125
GsuI	CTGGAG	4 cut(s)	140, 250, 1909, 1990
HaeII	RGCGCY	1 cut(s)	1969
HaeIII	GGCC	3 cut(s)	858, 1894, 2160
HapII	CCGG	5 cut(s)	1011, 1752, 1783, 1957, 1986
HgaI	GACGC	3 cut(s)	1315, 2014, 2210
HhaI	GCGC	2 cut(s)	327, 1968
Hin1I	GRCGYC	1 cut(s)	2006
Hin1II	CATG	9 cut(s)	352, 403, 538, 798, 998, 1860, 2066, 2188, 2287
Hin6I	GCGC	2 cut(s)	325, 1966
HinP1I	GCGC	2 cut(s)	325, 1966
HindIII	AAGCTT	1 cut(s)	867
HinfI	GANTC	8 cut(s)	43, 141, 770, 1511, 1972, 2034, 2085, 2099
HpaII	CCGG	5 cut(s)	1011, 1752, 1783, 1957, 1986
HphI	GGTGA	2 cut(s)	807, 1672
Hpy166II	GTNNAC	6 cut(s)	634, 815, 1039, 1343, 1436, 1707
Hpy188I	TCNGA	8 cut(s)	140, 528, 600, 1305, 1372, 1510, 2217, 2271
Hpy8I	GTNNAC	6 cut(s)	634, 815, 1039, 1343, 1436, 1707
HpyAV	CCTTC	7 cut(s)	143, 355, 545, 646, 1153, 1235, 2203
HpyCH4III	ACNGT	7 cut(s)	211, 521, 1611, 1616, 2078, 2177, 2244
HpyCH4IV	ACGT	2 cut(s)	1407, 1703
HpyF10VI	GCNNNNNNNGC	5 cut(s)	101, 116, 1355, 1931, 2285
HpySE526I	ACGT	2 cut(s)	1407, 1703
Hsp92I	GRCGYC	1 cut(s)	2006
Hsp92II	CATG	9 cut(s)	352, 403, 538, 798, 998, 1860, 2066, 2188, 2287
HspAI	GCGC	2 cut(s)	325, 1966
Kpn2I	TCCGGA	1 cut(s)	1782
Kzo9I	GATC	5 cut(s)	193, 595, 1289, 2210, 2237
LguI	GCTCTTC	1 cut(s)	1428
LmnI	GCTCC	5 cut(s)	311, 1201, 1324, 1594, 2195
Lsp1109I	GCAGC	6 cut(s)	82, 244, 247, 744, 1558, 2136
LweI	GCATC	7 cut(s)	1075, 1183, 1863, 1943, 2136, 2154, 2208
MaeI	CTAG	7 cut(s)	54, 383, 474, 785, 924, 1148, 1346
MaeII	ACGT	2 cut(s)	1407, 1703
MaeIII	GTNAC	5 cut(s)	211, 973, 1403, 1515, 1769
MalI	GATC	5 cut(s)	195, 597, 1291, 2212, 2239
MboI	GATC	5 cut(s)	193, 595, 1289, 2210, 2237
MfeI	CAATTG	2 cut(s)	1867, 2022
MflI	RGATCY	2 cut(s)	193, 2210
MhlI	GDGCHC	8 cut(s)	316, 435, 621, 636, 1321, 1423, 1627, 2192
MlyI	GAGTC	6 cut(s)	52, 135, 1520, 1981, 2043, 2108
MmeI	TCCRAC	3 cut(s)	2042, 2062, 2113
Mph1103I	ATGCAT	1 cut(s)	796
MroI	TCCGGA	1 cut(s)	1782
MroXI	GAANNNNTTC	1 cut(s)	555
MseI	TTAA	7 cut(s)	9, 545, 891, 1016, 1079, 1170, 1362
MslI	CAYNNNNRTG	1 cut(s)	1855
MspA1I	CMGCKG	2 cut(s)	74, 1906
MspCI	CTTAAG	1 cut(s)	1169
MspI	CCGG	5 cut(s)	1011, 1752, 1783, 1957, 1986
MspR9I	CCNGG	8 cut(s)	158, 294, 615, 860, 1068, 1986, 1987, 2156
MssI	GTTTAAAC	1 cut(s)	1017
MunI	CAATTG	2 cut(s)	1867, 2022
Mva1269I	GAATGC	2 cut(s)	709, 1637
MvaI	CCWGG	6 cut(s)	158, 294, 615, 860, 1068, 2156
MvnI	CGCG	1 cut(s)	325
MwoI	GCNNNNNNNGC	5 cut(s)	101, 116, 1355, 1931, 2285
NciI	CCSGG	2 cut(s)	1986, 1987
NdeII	GATC	5 cut(s)	193, 595, 1289, 2210, 2237
NlaIII	CATG	9 cut(s)	352, 403, 538, 798, 998, 1860, 2066, 2188, 2287
NlaIV	GGNNCC	6 cut(s)	70, 313, 921, 1626, 1961, 2191
NmeAIII	GCCGAG	1 cut(s)	786
NmuCI	GTSAC	3 cut(s)	211, 1403, 1515
NsiI	ATGCAT	1 cut(s)	796
NspI	RCATGY	1 cut(s)	998
NspV	TTCGAA	2 cut(s)	221, 1229
PaeR7I	CTCGAG	1 cut(s)	2247
PagI	TCATGA	1 cut(s)	534
PaqCI	CACCTGC	2 cut(s)	1399, 2018
PciI	ACATGT	1 cut(s)	994
PciSI	GCTCTTC	1 cut(s)	1428
PcsI	WCGNNNNNNNCGW	1 cut(s)	1404
PctI	GAATGC	2 cut(s)	709, 1637
PdmI	GAANNNNTTC	1 cut(s)	555
PfeI	GAWTC	2 cut(s)	770, 2085
PflFI	GACNNNGTC	1 cut(s)	2064
PflMI	CCANNNNNTGG	2 cut(s)	938, 2095
PfoI	TCCNGGA	1 cut(s)	156
PinAI	ACCGGT	1 cut(s)	1010
PkrI	GCNGC	6 cut(s)	97, 259, 262, 759, 1573, 2126
PleI	GAGTC	6 cut(s)	51, 135, 1519, 1980, 2042, 2107
PmaCI	CACGTG	1 cut(s)	1704
PmeI	GTTTAAAC	1 cut(s)	1017
PmlI	CACGTG	1 cut(s)	1704
PpsI	GAGTC	6 cut(s)	51, 135, 1519, 1980, 2042, 2107
Ppu21I	YACGTR	1 cut(s)	1704
PpuMI	RGGWCCY	1 cut(s)	920
PscI	ACATGT	1 cut(s)	994
Psp5II	RGGWCCY	1 cut(s)	920
Psp6I	CCWGG	6 cut(s)	156, 292, 613, 858, 1066, 2154
PspCI	CACGTG	1 cut(s)	1704
PspGI	CCWGG	6 cut(s)	156, 292, 613, 858, 1066, 2154
PspN4I	GGNNCC	6 cut(s)	70, 313, 921, 1626, 1961, 2191
PspPI	GGNCC	4 cut(s)	920, 1377, 1914, 2158
PspPPI	RGGWCCY	1 cut(s)	920
PstI	CTGCAG	3 cut(s)	745, 972, 1188
PsuI	RGATCY	2 cut(s)	193, 2210
PsyI	GACNNNGTC	1 cut(s)	2064
RsaI	GTAC	6 cut(s)	339, 416, 466, 1613, 1779, 2111
RsaNI	GTAC	6 cut(s)	338, 415, 465, 1612, 1778, 2110
RseI	CAYNNNNRTG	1 cut(s)	1855
SapI	GCTCTTC	1 cut(s)	1428
SaqAI	TTAA	7 cut(s)	9, 545, 891, 1016, 1079, 1170, 1362
SatI	GCNGC	6 cut(s)	96, 258, 261, 758, 1572, 2125
Sau3AI	GATC	5 cut(s)	193, 595, 1289, 2210, 2237
Sau96I	GGNCC	4 cut(s)	920, 1377, 1914, 2158
ScaI	AGTACT	3 cut(s)	466, 1613, 1779
SchI	GAGTC	6 cut(s)	52, 135, 1520, 1981, 2043, 2108
ScrFI	CCNGG	8 cut(s)	158, 294, 615, 860, 1068, 1986, 1987, 2156
SduI	GDGCHC	8 cut(s)	316, 435, 621, 636, 1321, 1423, 1627, 2192
SfaNI	GCATC	7 cut(s)	1075, 1183, 1863, 1943, 2136, 2154, 2208
SfcI	CTRYAG	3 cut(s)	741, 968, 1184
Sfr274I	CTCGAG	1 cut(s)	2247
SfuI	TTCGAA	2 cut(s)	221, 1229
SinI	GGWCC	3 cut(s)	920, 1377, 1914
SlaI	CTCGAG	1 cut(s)	2247
SmaI	CCCGGG	1 cut(s)	1987
SmiMI	CAYNNNNRTG	1 cut(s)	1855
SmlI	CTYRAG	3 cut(s)	806, 1169, 2247
SmoI	CTYRAG	3 cut(s)	806, 1169, 2247
SpeI	ACTAGT	1 cut(s)	1147
SsiI	CCGC	4 cut(s)	72, 117, 917, 1904
SspMI	CTAG	7 cut(s)	54, 383, 474, 785, 924, 1148, 1346
StyD4I	CCNGG	8 cut(s)	156, 292, 613, 858, 1066, 1984, 1985, 2154
StyI	CCWWGG	1 cut(s)	498
TaaI	ACNGT	7 cut(s)	211, 521, 1611, 1616, 2078, 2177, 2244
TaiI	ACGT	2 cut(s)	1410, 1706
TatI	WGTACW	3 cut(s)	464, 1611, 1777
TfiI	GAWTC	2 cut(s)	770, 2085
Tru1I	TTAA	7 cut(s)	9, 545, 891, 1016, 1079, 1170, 1362
Tru9I	TTAA	7 cut(s)	9, 545, 891, 1016, 1079, 1170, 1362
TscAI	CASTG	6 cut(s)	294, 859, 972, 1057, 1524, 2083
TseFI	GTSAC	3 cut(s)	211, 1403, 1515
TseI	GCWGC	6 cut(s)	95, 257, 260, 757, 1571, 2124
Tsp45I	GTSAC	3 cut(s)	211, 1403, 1515
TspDTI	ATGAA	7 cut(s)	228, 337, 551, 951, 1005, 1591, 1802
TspMI	CCCGGG	1 cut(s)	1985
TspRI	CASTG	6 cut(s)	294, 859, 972, 1057, 1524, 2083
Tth111I	GACNNNGTC	1 cut(s)	2064
Van91I	CCANNNNNTGG	2 cut(s)	938, 2095
Vha464I	CTTAAG	1 cut(s)	1169
VneI	GTGCAC	1 cut(s)	632
VpaK11BI	GGWCC	3 cut(s)	920, 1377, 1914
XapI	RAATTY	4 cut(s)	437, 1232, 1453, 1881
XbaI	TCTAGA	1 cut(s)	784
XceI	RCATGY	1 cut(s)	998
XcmI	CCANNNNNNNNNTGG	2 cut(s)	675, 1884
XhoI	CTCGAG	1 cut(s)	2247
XmaI	CCCGGG	1 cut(s)	1985
XmnI	GAANNNNTTC	1 cut(s)	555
XspI	CTAG	7 cut(s)	54, 383, 474, 785, 924, 1148, 1346
ZrmI	AGTACT	3 cut(s)	466, 1613, 1779
Zsp2I	ATGCAT	1 cut(s)	796

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.