Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0006210

Physical Location & Seq

Genomic Coordinates Reverse (-)

48466775 .. 48467386

Gene Structure 612 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0331700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 534 bp

ATGCTGCGGTCAACTTCCTCGATGACCGCTACTTGTCCGACGCAGACGGAGACGGAGAGACGAGTGAGGTCAGCAGAGAGGAAGTCGAGGCTGCTCCCAGATCCTACGGATCTGAACTTGGGGCAGTACGTGTTCTCCGACATGGATCCGTATTTGGATCTGGATTACGGGGCAGTGGATCCGAAAGCTCCAGCTCAGGAGGAGCAGAACAGTAGCAGTACTGACGGAGTGGTCCCTGTGCAAAGCAAGACTGTCCAGCCTCAAAGCTTTGAAATGGAGTTGCCAGGATCCAAGCCTTTCATCTACGGCTACCATGGCCACTGTTTAAGCCAGAGTGTATCATCATCCTCTATGGATGTTAGCGTCGTGCCAAATGGCAACATGCTGACGGAGTTGTTAGATCCCTACCCCAAGTCGATCGGCGATCAGTTAACGCATCCAGCGGTTCAGATTTCATCGACAGAACGGGAAGCTAGGGTGTTGAGGTATAGAGAGAAGAGAAAGAACCGAAAGTTCGAAAAGACGATTCGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0005575 GO:0005623 GO:0005886 GO:0005887 GO:0006139 GO:0006725 GO:0006807 GO:0006950 GO:0007155 GO:0007275 GO:0007596 GO:0007599 GO:0008150 GO:0008152 GO:0009056 GO:0009555 GO:0009611 GO:0009653 GO:0009791 GO:0009900 GO:0009901 GO:0009908 GO:0009987 GO:0010208 GO:0010584 GO:0010927 GO:0016020 GO:0016021 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0017110 GO:0017111 GO:0019439 GO:0022414 GO:0022607 GO:0022610 GO:0030198 GO:0031224 GO:0031226 GO:0032501 GO:0032502 GO:0032504 GO:0032989 GO:0034641 GO:0034655 GO:0034656 GO:0042060 GO:0043062 GO:0044085 GO:0044237 GO:0044238 GO:0044248 GO:0044270 GO:0044281 GO:0044282 GO:0044425 GO:0044459 GO:0044464 GO:0045229 GO:0046483 GO:0046700 GO:0048229 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048608 GO:0048609 GO:0048646 GO:0048653 GO:0048731 GO:0048827 GO:0048856 GO:0048869 GO:0050817 GO:0050878 GO:0050896 GO:0055086 GO:0061458 GO:0065007 GO:0065008 GO:0071704 GO:0071840 GO:0071944 GO:0085029 GO:0090567 GO:0099402 GO:1901360 GO:1901361 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko00230 ko00240 ko05169 map00230 map00240 map05169

Pfam Domains

Protein Families

GDA1_CD39

Protein Analysis

177

Amino Acids

19.87

Weight (kDa)

6.31

Isoelectric Point (pI)

55.22

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006210)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G19180 AT4G19180 AT4G19180
fragaria_vesca	FvH4_2g37270 FvH4_2g37270 FvH4_2g37270 FvH4_2g37270 FvH4_2g37270 FvH4_2g37270
malus_domestica	MD08G1000700.v1.1
prunus_persica	Prupe.1G352700_v2.0.a1 Prupe.1G352700_v2.0.a1 Prupe.1G352700_v2.0.a1 Prupe.1G352700_v2.0.a1
pyrus_communis	pycom08g00020
rosa_chinensis	RchiOBHm_Chr6g0304431
rosa_laevigata	RLG00000010979
rosa_multiflora	Rmu_ssc0000218.1_g000051
rosa_roxburghii	Rroxscaffold_7G00163740
rosa_rugosa	Rorug06G0331500 Rorug06G0331600 Rorug06G0331700
rosa_samantha	Rh6AG444400 Rh6BG458000 Rh6CG457200 Rh6DG443900
rosa_wichuraiana	Rw6G038580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	230
AciI	CCGC	3 cut(s)	7, 27, 443
AcoI	YGGCCR	1 cut(s)	316
AfaI	GTAC	2 cut(s)	128, 220
AflIII	ACRYGT	1 cut(s)	129
AgsI	TTSAA	1 cut(s)	272
AjnI	CCWGG	1 cut(s)	283
AluBI	AGCT	4 cut(s)	188, 194, 267, 473
AluI	AGCT	4 cut(s)	188, 194, 267, 473
Alw26I	GTCTC	2 cut(s)	44, 52
AoxI	GGCC	1 cut(s)	316
ApeKI	GCWGC	2 cut(s)	4, 91
AspS9I	GGNCC	1 cut(s)	232
AsuII	TTCGAA	1 cut(s)	516
AvaII	GGWCC	1 cut(s)	232
BalI	TGGCCA	1 cut(s)	318
BamHI	GGATCC	3 cut(s)	145, 178, 287
BbvI	GCAGC	1 cut(s)	78
BceAI	ACGGC	1 cut(s)	322
BciT130I	CCWGG	1 cut(s)	285
BcoDI	GTCTC	2 cut(s)	44, 52
BfaI	CTAG	1 cut(s)	474
BisI	GCNGC	2 cut(s)	5, 92
BlsI	GCNGC	2 cut(s)	6, 93
BmcAI	AGTACT	1 cut(s)	220
Bme1390I	CCNGG	1 cut(s)	285
Bme18I	GGWCC	1 cut(s)	232
BmgT120I	GGNCC	1 cut(s)	232
BmiI	GGNNCC	4 cut(s)	147, 180, 234, 289
BmrFI	CCNGG	1 cut(s)	285
BmsI	GCATC	1 cut(s)	445
BpmI	CTGGAG	1 cut(s)	174
Bpu10I	CCTNAGC	1 cut(s)	195
Bpu14I	TTCGAA	1 cut(s)	516
BsaAI	YACGTR	1 cut(s)	130
BsaJI	CCNNGG	1 cut(s)	313
BsaXI	ACNNNNNCTCC	2 cut(s)	119, 149
BseBI	CCWGG	1 cut(s)	285
BseDI	CCNNGG	1 cut(s)	313
BseGI	GGATG	3 cut(s)	344, 361, 436
BseMII	CTCAG	1 cut(s)	209
BseRI	GAGGAG	1 cut(s)	215
BseXI	GCAGC	1 cut(s)	78
Bsh1285I	CGRYCG	1 cut(s)	420
BshFI	GGCC	1 cut(s)	318
BsiEI	CGRYCG	1 cut(s)	420
BslFI	GGGAC	1 cut(s)	218
BsmAI	GTCTC	2 cut(s)	44, 52
BsmBI	CGTCTC	2 cut(s)	44, 52
BsmFI	GGGAC	1 cut(s)	218
BsnI	GGCC	1 cut(s)	318
Bsp119I	TTCGAA	1 cut(s)	516
Bsp143I	GATC	9 cut(s)	100, 109, 145, 157, 178, 287, 400, 417, 424
Bsp19I	CCATGG	1 cut(s)	313
BspACI	CCGC	3 cut(s)	7, 27, 443
BspANI	GGCC	1 cut(s)	318
BspCNI	CTCAG	1 cut(s)	208
BspLI	GGNNCC	4 cut(s)	147, 180, 234, 289
BspT104I	TTCGAA	1 cut(s)	516
BssECI	CCNNGG	1 cut(s)	313
BssMI	GATC	9 cut(s)	100, 109, 145, 157, 178, 287, 400, 417, 424
BssT1I	CCWWGG	1 cut(s)	313
Bst2UI	CCWGG	1 cut(s)	285
Bst4CI	ACNGT	3 cut(s)	212, 253, 323
Bst6I	CTCTTC	1 cut(s)	491
BstBAI	YACGTR	1 cut(s)	130
BstBI	TTCGAA	1 cut(s)	516
BstDEI	CTNAG	1 cut(s)	195
BstDSI	CCRYGG	1 cut(s)	313
BstF5I	GGATG	3 cut(s)	344, 361, 436
BstKTI	GATC	9 cut(s)	103, 112, 148, 160, 181, 290, 403, 420, 427
BstMAI	GTCTC	2 cut(s)	44, 52
BstMBI	GATC	9 cut(s)	100, 109, 145, 157, 178, 287, 400, 417, 424
BstMCI	CGRYCG	1 cut(s)	420
BstMWI	GCNNNNNNNGC	1 cut(s)	315
BstNI	CCWGG	1 cut(s)	285
BstNSI	RCATGY	1 cut(s)	385
BstSCI	CCNGG	1 cut(s)	283
BstV1I	GCAGC	1 cut(s)	78
BstX2I	RGATCY	7 cut(s)	100, 109, 145, 157, 178, 287, 400
BstYI	RGATCY	7 cut(s)	100, 109, 145, 157, 178, 287, 400
BsuRI	GGCC	1 cut(s)	318
BtgI	CCRYGG	1 cut(s)	313
BtsCI	GGATG	3 cut(s)	344, 361, 436
BtsI	GCAGTG	1 cut(s)	180
BtsIMutI	CAGTG	2 cut(s)	180, 319
Cfr13I	GGNCC	1 cut(s)	232
CseI	GACGC	2 cut(s)	49, 352
Csp6I	GTAC	2 cut(s)	127, 219
CviAII	CATG	3 cut(s)	142, 314, 382
CviQI	GTAC	2 cut(s)	127, 219
DdeI	CTNAG	1 cut(s)	195
DpnI	GATC	9 cut(s)	102, 111, 147, 159, 180, 289, 402, 419, 426
DpnII	GATC	9 cut(s)	100, 109, 145, 157, 178, 287, 400, 417, 424
DrdI	GACNNNNNNGTC	1 cut(s)	230
DseDI	GACNNNNNNGTC	1 cut(s)	230
EaeI	YGGCCR	1 cut(s)	316
Eam1104I	CTCTTC	1 cut(s)	491
EarI	CTCTTC	1 cut(s)	491
Eco130I	CCWWGG	1 cut(s)	313
Eco47I	GGWCC	1 cut(s)	232
EcoRII	CCWGG	1 cut(s)	283
EcoT14I	CCWWGG	1 cut(s)	313
ErhI	CCWWGG	1 cut(s)	313
Esp3I	CGTCTC	2 cut(s)	44, 52
FaeI	CATG	3 cut(s)	145, 317, 385
FaiI	YATR	5 cut(s)	143, 315, 353, 383, 489
FaqI	GGGAC	1 cut(s)	218
FatI	CATG	3 cut(s)	141, 313, 381
Fnu4HI	GCNGC	2 cut(s)	5, 92
FokI	GGATG	3 cut(s)	331, 368, 423
Fsp4HI	GCNGC	2 cut(s)	5, 92
FspBI	CTAG	1 cut(s)	474
GluI	GCNGC	2 cut(s)	5, 92
GsuI	CTGGAG	1 cut(s)	174
HaeIII	GGCC	1 cut(s)	318
HgaI	GACGC	2 cut(s)	49, 352
Hin1II	CATG	3 cut(s)	145, 317, 385
HincII	GTYRAC	2 cut(s)	12, 432
HindII	GTYRAC	2 cut(s)	12, 432
HindIII	AAGCTT	1 cut(s)	265
HinfI	GANTC	1 cut(s)	526
HpaI	GTTAAC	1 cut(s)	432
Hpy166II	GTNNAC	2 cut(s)	12, 432
Hpy188I	TCNGA	5 cut(s)	39, 114, 139, 183, 450
Hpy188III	TCNNGA	2 cut(s)	161, 197
Hpy8I	GTNNAC	2 cut(s)	12, 432
Hpy99I	CGWCG	2 cut(s)	43, 368
HpyCH4III	ACNGT	3 cut(s)	212, 253, 323
HpyCH4IV	ACGT	1 cut(s)	129
HpyCH4V	TGCA	1 cut(s)	241
HpyF10VI	GCNNNNNNNGC	1 cut(s)	315
HpyF3I	CTNAG	1 cut(s)	195
HpySE526I	ACGT	1 cut(s)	129
Hsp92II	CATG	3 cut(s)	145, 317, 385
KspAI	GTTAAC	1 cut(s)	432
Kzo9I	GATC	9 cut(s)	100, 109, 145, 157, 178, 287, 400, 417, 424
LmnI	GCTCC	3 cut(s)	99, 193, 202
Lsp1109I	GCAGC	1 cut(s)	78
LweI	GCATC	1 cut(s)	445
MaeI	CTAG	1 cut(s)	474
MaeII	ACGT	1 cut(s)	129
MalI	GATC	9 cut(s)	102, 111, 147, 159, 180, 289, 402, 419, 426
MboI	GATC	9 cut(s)	100, 109, 145, 157, 178, 287, 400, 417, 424
MboII	GAAGA	1 cut(s)	508
MflI	RGATCY	7 cut(s)	100, 109, 145, 157, 178, 287, 400
MlsI	TGGCCA	1 cut(s)	318
MluNI	TGGCCA	1 cut(s)	318
MmeI	TCCRAC	2 cut(s)	62, 162
MnlI	CCTC	8 cut(s)	28, 60, 72, 81, 193, 270, 358, 477
Mox20I	TGGCCA	1 cut(s)	318
MscI	TGGCCA	1 cut(s)	318
MseI	TTAA	3 cut(s)	326, 431, 532
Msp20I	TGGCCA	1 cut(s)	318
MspA1I	CMGCKG	1 cut(s)	443
MspR9I	CCNGG	1 cut(s)	285
MvaI	CCWGG	1 cut(s)	285
MwoI	GCNNNNNNNGC	1 cut(s)	315
NcoI	CCATGG	1 cut(s)	313
NdeII	GATC	9 cut(s)	100, 109, 145, 157, 178, 287, 400, 417, 424
NlaIII	CATG	3 cut(s)	145, 317, 385
NlaIV	GGNNCC	4 cut(s)	147, 180, 234, 289
NspI	RCATGY	1 cut(s)	385
NspV	TTCGAA	1 cut(s)	516
PcsI	WCGNNNNNNNCGW	1 cut(s)	135
PfeI	GAWTC	1 cut(s)	526
PkrI	GCNGC	2 cut(s)	6, 93
Ple19I	CGATCG	1 cut(s)	420
Ppu21I	YACGTR	1 cut(s)	130
Psp6I	CCWGG	1 cut(s)	283
PspGI	CCWGG	1 cut(s)	283
PspN4I	GGNNCC	4 cut(s)	147, 180, 234, 289
PspPI	GGNCC	1 cut(s)	232
PsuI	RGATCY	7 cut(s)	100, 109, 145, 157, 178, 287, 400
PvuI	CGATCG	1 cut(s)	420
RsaI	GTAC	2 cut(s)	128, 220
RsaNI	GTAC	2 cut(s)	127, 219
SaqAI	TTAA	3 cut(s)	326, 431, 532
SatI	GCNGC	2 cut(s)	5, 92
Sau3AI	GATC	9 cut(s)	100, 109, 145, 157, 178, 287, 400, 417, 424
Sau96I	GGNCC	1 cut(s)	232
ScaI	AGTACT	1 cut(s)	220
ScrFI	CCNGG	1 cut(s)	285
SetI	ASST	7 cut(s)	71, 132, 190, 196, 269, 475, 488
SfaNI	GCATC	1 cut(s)	445
SfuI	TTCGAA	1 cut(s)	516
SinI	GGWCC	1 cut(s)	232
SsiI	CCGC	3 cut(s)	7, 27, 443
SspMI	CTAG	1 cut(s)	474
StyD4I	CCNGG	1 cut(s)	283
StyI	CCWWGG	1 cut(s)	313
TaaI	ACNGT	3 cut(s)	212, 253, 323
TaiI	ACGT	1 cut(s)	132
TaqI	TCGA	5 cut(s)	20, 86, 416, 458, 516
TatI	WGTACW	1 cut(s)	218
TfiI	GAWTC	1 cut(s)	526
Tru1I	TTAA	3 cut(s)	326, 431, 532
Tru9I	TTAA	3 cut(s)	326, 431, 532
TscAI	CASTG	2 cut(s)	180, 326
TseI	GCWGC	2 cut(s)	4, 91
TspDTI	ATGAA	2 cut(s)	289, 444
TspGWI	ACGGA	6 cut(s)	62, 68, 122, 138, 240, 404
TspRI	CASTG	2 cut(s)	180, 326
VpaK11BI	GGWCC	1 cut(s)	232
XceI	RCATGY	1 cut(s)	385
XspI	CTAG	1 cut(s)	474
ZrmI	AGTACT	1 cut(s)	220

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.