Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0006210

Physical Location & Seq

Genomic Coordinates Reverse (-)

48460553 .. 48461212

Gene Structure 660 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0331500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 660 bp

ATGATGGAGAGAGTCAAGAAGATTCTTACCTTGTTTGCAGCAACCCTGCTATTGCTTCCCATCATGGAGGCGCAGCATTATCCTCCTCCCCGCCCATTTTGTGCATCCCAATTTGCACTTGCTAGCTACGCGTGTTCACTGCTGCCGTATACTCCAATGCCAACTCCACAACCTCCTTCCCCTCCTGCCCCTTCACCTCCTGATGATGACGACAACGACGATGATGACGACGACGATGACGATGGTGGTGGTGATGACGGTCGTGATGGTGGTGGTGATGGCGGTCGTGATGGTGATGGTGATGACGGTCGTGATGGTGGTGGTGATGGCGGTCGTGATGGTGATGGTGATCAACCAGAGCATGGTAGCGGCCACGGCCATGGTCGCAGCCACGGCCACGGTCACGGCCACCACCACAGACATGGGCGCAATCGCAAACAACAACGTCGCCATAGACACAGGCATGGGCACCACCATAGGTCAGAAACACCACTGTCACCCCAAGAAGATAATTGCTGCAAATGGTTGAACCAGCTTGATAACCAGTGTGTCTGTGAGTTGCTTCTGCGCTTGCCCACCTTCCTCCTTAAGCCTGCACACACTTACTCTCTATTTGTTGGATCGTCCTGCAACGTTAAATACACTTGCACACACCCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0005575 GO:0005623 GO:0005886 GO:0005887 GO:0006139 GO:0006725 GO:0006807 GO:0006950 GO:0007155 GO:0007275 GO:0007596 GO:0007599 GO:0008150 GO:0008152 GO:0009056 GO:0009555 GO:0009611 GO:0009653 GO:0009791 GO:0009900 GO:0009901 GO:0009908 GO:0009987 GO:0010208 GO:0010584 GO:0010927 GO:0016020 GO:0016021 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0017110 GO:0017111 GO:0019439 GO:0022414 GO:0022607 GO:0022610 GO:0030198 GO:0031224 GO:0031226 GO:0032501 GO:0032502 GO:0032504 GO:0032989 GO:0034641 GO:0034655 GO:0034656 GO:0042060 GO:0043062 GO:0044085 GO:0044237 GO:0044238 GO:0044248 GO:0044270 GO:0044281 GO:0044282 GO:0044425 GO:0044459 GO:0044464 GO:0045229 GO:0046483 GO:0046700 GO:0048229 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048608 GO:0048609 GO:0048646 GO:0048653 GO:0048731 GO:0048827 GO:0048856 GO:0048869 GO:0050817 GO:0050878 GO:0050896 GO:0055086 GO:0061458 GO:0065007 GO:0065008 GO:0071704 GO:0071840 GO:0071944 GO:0085029 GO:0090567 GO:0099402 GO:1901360 GO:1901361 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko00230 ko00240 ko05169 map00230 map00240 map05169

Pfam Domains

Protein Families

GDA1_CD39

Protein Analysis

219

Amino Acids

23.97

Weight (kDa)

5.81

Isoelectric Point (pI)

58.02

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006210)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G19180 AT4G19180 AT4G19180
fragaria_vesca	FvH4_2g37270 FvH4_2g37270 FvH4_2g37270 FvH4_2g37270 FvH4_2g37270 FvH4_2g37270
malus_domestica	MD08G1000700.v1.1
prunus_persica	Prupe.1G352700_v2.0.a1 Prupe.1G352700_v2.0.a1 Prupe.1G352700_v2.0.a1 Prupe.1G352700_v2.0.a1
pyrus_communis	pycom08g00020
rosa_chinensis	RchiOBHm_Chr6g0304431
rosa_laevigata	RLG00000010979
rosa_multiflora	Rmu_ssc0000218.1_g000051
rosa_roxburghii	Rroxscaffold_7G00163740
rosa_rugosa	Rorug06G0331500 Rorug06G0331600 Rorug06G0331700
rosa_samantha	Rh6AG444400 Rh6BG458000 Rh6CG457200 Rh6DG443900
rosa_wichuraiana	Rw6G038580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	468
AccB7I	CCANNNNNTGG	1 cut(s)	362
AccI	GTMKAC	1 cut(s)	149
AccII	CGCG	1 cut(s)	131
AciI	CCGC	4 cut(s)	91, 282, 330, 369
AclI	AACGTT	1 cut(s)	633
AclWI	GGATC	1 cut(s)	628
AcoI	YGGCCR	4 cut(s)	370, 376, 394, 406
AfiI	CCNNNNNNNGG	1 cut(s)	362
AflII	CTTAAG	1 cut(s)	587
AflIII	ACRYGT	1 cut(s)	129
AgsI	TTSAA	1 cut(s)	529
AluBI	AGCT	2 cut(s)	126, 535
AluI	AGCT	2 cut(s)	126, 535
AlwI	GGATC	1 cut(s)	628
AoxI	GGCC	4 cut(s)	370, 376, 394, 406
ApeKI	GCWGC	5 cut(s)	38, 73, 142, 387, 516
AspLEI	GCGC	3 cut(s)	73, 429, 570
AsuHPI	GGTGA	9 cut(s)	186, 263, 287, 305, 311, 335, 353, 359, 489
AsuNHI	GCTAGC	1 cut(s)	122
BaeGI	GKGCMC	1 cut(s)	471
BanI	GGYRCC	1 cut(s)	468
BbvI	GCAGC	5 cut(s)	50, 85, 129, 399, 503
BceAI	ACGGC	4 cut(s)	130, 391, 409, 421
BclI	TGATCA	1 cut(s)	349
BfaI	CTAG	1 cut(s)	123
BfrI	CTTAAG	1 cut(s)	587
BisI	GCNGC	6 cut(s)	39, 74, 143, 370, 388, 517
BlsI	GCNGC	6 cut(s)	40, 75, 144, 371, 389, 518
BmiI	GGNNCC	1 cut(s)	470
BmsI	GCATC	1 cut(s)	113
BmtI	GCTAGC	1 cut(s)	126
BsaBI	GATNNNNATC	1 cut(s)	348
BsaJI	CCNNGG	4 cut(s)	373, 379, 391, 397
Bsc4I	CCNNNNNNNGG	1 cut(s)	362
Bse1I	ACTGG	1 cut(s)	544
Bse8I	GATNNNNATC	1 cut(s)	348
BseDI	CCNNGG	4 cut(s)	373, 379, 391, 397
BseGI	GGATG	1 cut(s)	104
BseJI	GATNNNNATC	1 cut(s)	348
BseLI	CCNNNNNNNGG	1 cut(s)	362
BseNI	ACTGG	1 cut(s)	544
BseRI	GAGGAG	1 cut(s)	75
BseSI	GKGCMC	1 cut(s)	471
BseXI	GCAGC	5 cut(s)	50, 85, 129, 399, 503
BsgI	GTGCAG	1 cut(s)	579
Bsh1236I	CGCG	1 cut(s)	131
Bsh1285I	CGRYCG	4 cut(s)	262, 286, 310, 334
BshFI	GGCC	4 cut(s)	372, 378, 396, 408
BshNI	GGYRCC	1 cut(s)	468
BsiEI	CGRYCG	4 cut(s)	262, 286, 310, 334
BslI	CCNNNNNNNGG	1 cut(s)	362
BsnI	GGCC	4 cut(s)	372, 378, 396, 408
Bsp1286I	GDGCHC	1 cut(s)	471
Bsp143I	GATC	2 cut(s)	349, 620
Bsp19I	CCATGG	1 cut(s)	379
BspACI	CCGC	4 cut(s)	91, 282, 330, 369
BspANI	GGCC	4 cut(s)	372, 378, 396, 408
BspFNI	CGCG	1 cut(s)	131
BspLI	GGNNCC	1 cut(s)	470
BspOI	GCTAGC	1 cut(s)	126
BspPI	GGATC	1 cut(s)	628
BspT107I	GGYRCC	1 cut(s)	468
BspTI	CTTAAG	1 cut(s)	587
BsrI	ACTGG	1 cut(s)	544
BssECI	CCNNGG	4 cut(s)	373, 379, 391, 397
BssMI	GATC	2 cut(s)	349, 620
BssNAI	GTATAC	1 cut(s)	150
BssT1I	CCWWGG	1 cut(s)	379
Bst1107I	GTATAC	1 cut(s)	150
Bst4CI	ACNGT	4 cut(s)	260, 308, 401, 495
BstAFI	CTTAAG	1 cut(s)	587
BstC8I	GCNNGC	3 cut(s)	124, 572, 594
BstDSI	CCRYGG	4 cut(s)	373, 379, 391, 397
BstF5I	GGATG	1 cut(s)	104
BstFNI	CGCG	1 cut(s)	131
BstHHI	GCGC	3 cut(s)	73, 429, 570
BstKTI	GATC	2 cut(s)	352, 623
BstMBI	GATC	2 cut(s)	349, 620
BstMCI	CGRYCG	4 cut(s)	262, 286, 310, 334
BstMWI	GCNNNNNNNGC	4 cut(s)	128, 375, 384, 393
BstSLI	GKGCMC	1 cut(s)	471
BstUI	CGCG	1 cut(s)	131
BstV1I	GCAGC	5 cut(s)	50, 85, 129, 399, 503
BstXI	CCANNNNNNTGG	2 cut(s)	380, 422
BstZ17I	GTATAC	1 cut(s)	150
BsuRI	GGCC	4 cut(s)	372, 378, 396, 408
BtgI	CCRYGG	4 cut(s)	373, 379, 391, 397
BtsCI	GGATG	1 cut(s)	104
BtsI	GCAGTG	1 cut(s)	137
BtsIMutI	CAGTG	3 cut(s)	137, 491, 551
Cac8I	GCNNGC	3 cut(s)	124, 572, 594
CfoI	GCGC	3 cut(s)	73, 429, 570
CviAII	CATG	6 cut(s)	64, 362, 380, 422, 464, 657
CviJI	RGCY	8 cut(s)	126, 372, 378, 390, 396, 408, 535, 592
CviKI_1	RGCY	8 cut(s)	126, 372, 378, 390, 396, 408, 535, 592
DpnI	GATC	2 cut(s)	351, 622
DpnII	GATC	2 cut(s)	349, 620
EaeI	YGGCCR	4 cut(s)	370, 376, 394, 406
Eco130I	CCWWGG	1 cut(s)	379
EcoT14I	CCWWGG	1 cut(s)	379
ErhI	CCWWGG	1 cut(s)	379
FaeI	CATG	6 cut(s)	67, 365, 383, 425, 467, 660
FaiI	YATR	9 cut(s)	65, 150, 363, 381, 423, 453, 465, 477, 658
FatI	CATG	6 cut(s)	63, 361, 379, 421, 463, 656
FauI	CCCGC	1 cut(s)	98
FbaI	TGATCA	1 cut(s)	349
FblI	GTMKAC	1 cut(s)	149
Fnu4HI	GCNGC	6 cut(s)	39, 74, 143, 370, 388, 517
FokI	GGATG	1 cut(s)	91
Fsp4HI	GCNGC	6 cut(s)	39, 74, 143, 370, 388, 517
FspBI	CTAG	1 cut(s)	123
GlaI	GCGC	3 cut(s)	72, 428, 569
GluI	GCNGC	6 cut(s)	39, 74, 143, 370, 388, 517
HaeIII	GGCC	4 cut(s)	372, 378, 396, 408
HhaI	GCGC	3 cut(s)	73, 429, 570
Hin1II	CATG	6 cut(s)	67, 365, 383, 425, 467, 660
Hin6I	GCGC	3 cut(s)	71, 427, 568
HinP1I	GCGC	3 cut(s)	71, 427, 568
HinfI	GANTC	2 cut(s)	12, 22
HphI	GGTGA	9 cut(s)	186, 263, 287, 305, 311, 335, 353, 359, 489
Hpy166II	GTNNAC	2 cut(s)	137, 150
Hpy188I	TCNGA	1 cut(s)	484
Hpy188III	TCNNGA	6 cut(s)	16, 200, 263, 287, 311, 335
Hpy8I	GTNNAC	2 cut(s)	137, 150
Hpy99I	CGWCG	4 cut(s)	221, 233, 236, 450
HpyAV	CCTTC	3 cut(s)	186, 201, 589
HpyCH4III	ACNGT	4 cut(s)	260, 308, 401, 495
HpyCH4IV	ACGT	2 cut(s)	445, 633
HpyCH4V	TGCA	7 cut(s)	38, 104, 116, 519, 596, 630, 648
HpyF10VI	GCNNNNNNNGC	4 cut(s)	128, 375, 384, 393
HpySE526I	ACGT	2 cut(s)	445, 633
Hsp92II	CATG	6 cut(s)	67, 365, 383, 425, 467, 660
HspAI	GCGC	3 cut(s)	71, 427, 568
Ksp22I	TGATCA	1 cut(s)	349
Kzo9I	GATC	2 cut(s)	349, 620
LpnPI	CCDG	9 cut(s)	59, 198, 213, 369, 445, 545, 557, 606, 640
Lsp1109I	GCAGC	5 cut(s)	50, 85, 129, 399, 503
LweI	GCATC	1 cut(s)	113
MaeI	CTAG	1 cut(s)	123
MaeII	ACGT	2 cut(s)	445, 633
MaeIII	GTNAC	2 cut(s)	401, 495
MalI	GATC	2 cut(s)	351, 622
MboI	GATC	2 cut(s)	349, 620
MboII	GAAGA	2 cut(s)	31, 518
MhlI	GDGCHC	1 cut(s)	471
MluCI	AATT	2 cut(s)	110, 511
MluI	ACGCGT	1 cut(s)	129
MlyI	GAGTC	1 cut(s)	21
MmeI	TCCRAC	1 cut(s)	598
MnlI	CCTC	7 cut(s)	61, 93, 96, 183, 192, 207, 593
MseI	TTAA	2 cut(s)	588, 636
MslI	CAYNNNNRTG	4 cut(s)	378, 420, 462, 655
MspCI	CTTAAG	1 cut(s)	587
MvnI	CGCG	1 cut(s)	131
MwoI	GCNNNNNNNGC	4 cut(s)	128, 375, 384, 393
NcoI	CCATGG	1 cut(s)	379
NdeII	GATC	2 cut(s)	349, 620
NheI	GCTAGC	1 cut(s)	122
NlaIII	CATG	6 cut(s)	67, 365, 383, 425, 467, 660
NlaIV	GGNNCC	1 cut(s)	470
NmuCI	GTSAC	2 cut(s)	401, 495
PcsI	WCGNNNNNNNCGW	3 cut(s)	216, 225, 237
PfeI	GAWTC	1 cut(s)	22
PflMI	CCANNNNNTGG	1 cut(s)	362
PkrI	GCNGC	6 cut(s)	40, 75, 144, 371, 389, 518
PleI	GAGTC	1 cut(s)	20
PpsI	GAGTC	1 cut(s)	20
Psp1406I	AACGTT	1 cut(s)	633
PspN4I	GGNNCC	1 cut(s)	470
RseI	CAYNNNNRTG	4 cut(s)	378, 420, 462, 655
SaqAI	TTAA	2 cut(s)	588, 636
SatI	GCNGC	6 cut(s)	39, 74, 143, 370, 388, 517
Sau3AI	GATC	2 cut(s)	349, 620
SchI	GAGTC	1 cut(s)	21
SduI	GDGCHC	1 cut(s)	471
SetI	ASST	9 cut(s)	32, 128, 175, 199, 448, 482, 537, 581, 636
SfaNI	GCATC	1 cut(s)	113
SmiMI	CAYNNNNRTG	4 cut(s)	378, 420, 462, 655
SmlI	CTYRAG	1 cut(s)	587
SmoI	CTYRAG	1 cut(s)	587
Sse9I	AATT	2 cut(s)	110, 511
SsiI	CCGC	4 cut(s)	91, 282, 330, 369
SspMI	CTAG	1 cut(s)	123
StyI	CCWWGG	1 cut(s)	379
TaaI	ACNGT	4 cut(s)	260, 308, 401, 495
TaiI	ACGT	2 cut(s)	448, 636
TasI	AATT	2 cut(s)	110, 511
TauI	GCSGC	1 cut(s)	372
TfiI	GAWTC	1 cut(s)	22
Tru1I	TTAA	2 cut(s)	588, 636
Tru9I	TTAA	2 cut(s)	588, 636
TscAI	CASTG	3 cut(s)	144, 498, 551
TseFI	GTSAC	2 cut(s)	401, 495
TseI	GCWGC	5 cut(s)	38, 73, 142, 387, 516
Tsp45I	GTSAC	2 cut(s)	401, 495
TspRI	CASTG	3 cut(s)	144, 498, 551
Van91I	CCANNNNNTGG	1 cut(s)	362
Vha464I	CTTAAG	1 cut(s)	587
XcmI	CCANNNNNNNNNTGG	1 cut(s)	419
XmiI	GTMKAC	1 cut(s)	149
XspI	CTAG	1 cut(s)	123

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.