Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

OG0006210

Physical Location & Seq

Genomic Coordinates Forward (+)

63100714 .. 63105394

Gene Structure 4681 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG444400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2031 bp

ATGGTGTTTAATCGAATTGCCAATTTCTTTGCTTCTCTATCGAGTCGTTGGTCTAGCCCTCAGGGTGGTTCCGCTGTATCGCCTCCCAAATCTGCTGCTTTTGCCTTTGCAAACACCGCACGCAACAAGAACCTTCTCAGACTCTCATCGTCTCTCCAGGATTTCTCATCTTATAGCCAGCTTGATATCGAAGATCCCAATATCGCAACTGTGACACATTCGAAACCCCCTCCTCATTCATTGCAGAGAGAAACTGCTGCTGCCTCCAGCTTTTCAAAGGAGAAATCACTGCCAGGAGGAGGAGGAGGAGGAGCCCCATTTTCGCGCAACAAGTGGGTACGAGCCTTCATGTTTCTTTGCTGTGTTTTGTTGGTTGGTTTTCTAGTTTATTTGGTTTCCATGTTGGTTTATTCGTACTGGTCTAAAGGAGAGCCCAAATTCTATATTGTGCTGGATTGTGGAAGTACTGGGACTAGAGTTTATGTATATCAGGCAACCTTGGACAACGAGAAAGATAACAGTTTTCCGATTGTCATGAAGTCATTAACAGAAGGTCTTCAAAGAAAACCTAAGGCTCACACAGGGCGAGCTTATGATCGGATGGAAACTGAGCCTGGGCTCGACAAGTTGGTGCACAATGTCTCAGGGTTGAAGGTTGCAATAAAACCACTTGTTCAATGGGCAGAGAAGCAAATCCCAAAGAATGCACACAAGACAACCTCACTCTTCCTCTATGCAACTGCAGGGGTTCGTAGGCTGCCGAGTAATGATTCAAAATGGCTTCTAGATAATGCATGGTCTATACTCAAGAGTTCACCTTTCTTGTGCCAAAGAGATTGGGTTAGGACTATCAGTGGCCTGGAAGAAGCTTACTTTGGCTGGATAGCCCTTAACCATCATAGGGGTATGTTTGGGGCGGGACCTAGAAAGCCAACATTTGGTTCGCTTGACTTGGGTGGTTCATCACTGCAGGTTACATTTGAGAGTAATGAACATGTGCAAAAAGACACCGGTTTAAACATTAGAATTGGGGCTGTGAACCATCATCTCACTGCGTATTCTCTCCCTGGTTATGGTTTAAATGATGCGTTTGACAAGTCTGTGGGTCGTCTCTTCGAGAGGCTTCCAGAAGTCAATAAGACAGAACTAGTGAATGGGAAGGGAGAACTTAAGCATCCTTGCCTGCAGTCTGGGTATAAGGAGCAATACATTTGCTCTCAATGTGTTTCGAAATTCCAAGAAGGTGGAAGCCCTGTGATTGCAAAAAAGAGTTTGGGCAAAGGAGGAAGATCAGGGGTTTCTCTGACGCTCATCGGTGCTCCAAATTGGGAGGAGTGTGGTAAACTAGCAAGAGTTGCTGTTAATTTATCGGAATGGTCCAATATAACACCTGCACTCGATTGTGACGTGCAACCTTGTGCTCTTCCAGATGGTTTACCCCGACCTTATGGAAATTTTTATGCAATTTCAGGATTTTTTGTGGTTTATCGGTTTTTCAATTTGACTTCTGAGTCGTCACTGGATGATGTTTTGGAAAAGGGTCGGCAGTTTTGTGAAAGAACTTGGGAAGCTGCAAAGAAGAGTGTTGCTCCTCAGCCTTTCATTGAACAGTACTGTTTTAGGGCACCATATATTGCATTCTTGTTGAGGGAGGGCTTGCACATTATAGACAATCAAATCACCATTGGTTCTGGAAGTATCACGTGGACACAGGGGGTTGCTCTGCTGGAAGCTGGAAAGACACTCTCGACCGGACTGGGGTTTCGCAGTTACGAAGTACTCCGGATGAAAATAAACCCATTATTTCTTCTTTCAGTTTTGTTTATATCATTGATTTTACTCCTTTGTGCATTATCATGTATTGCCAATTGGATGCCAAAAATTTTCTGGAGGCCATATCTCCCGCTGTTTTGGACCAATAATGCCTCTTCTGCATCTGGTATTCCATCTCCTTTCCGGTTCCAGCGCTGGAGTCCTATTATTCCCGGTGAGCTCTCCTTCAATACTCTTGATTTGCTAGTTCTGAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0005575 GO:0005623 GO:0005886 GO:0005887 GO:0006139 GO:0006725 GO:0006807 GO:0006950 GO:0007155 GO:0007275 GO:0007596 GO:0007599 GO:0008150 GO:0008152 GO:0009056 GO:0009555 GO:0009611 GO:0009653 GO:0009791 GO:0009900 GO:0009901 GO:0009908 GO:0009987 GO:0010208 GO:0010584 GO:0010927 GO:0016020 GO:0016021 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0017110 GO:0017111 GO:0019439 GO:0022414 GO:0022607 GO:0022610 GO:0030198 GO:0031224 GO:0031226 GO:0032501 GO:0032502 GO:0032504 GO:0032989 GO:0034641 GO:0034655 GO:0034656 GO:0042060 GO:0043062 GO:0044085 GO:0044237 GO:0044238 GO:0044248 GO:0044270 GO:0044281 GO:0044282 GO:0044425 GO:0044459 GO:0044464 GO:0045229 GO:0046483 GO:0046700 GO:0048229 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048608 GO:0048609 GO:0048646 GO:0048653 GO:0048731 GO:0048827 GO:0048856 GO:0048869 GO:0050817 GO:0050878 GO:0050896 GO:0055086 GO:0061458 GO:0065007 GO:0065008 GO:0071704 GO:0071840 GO:0071944 GO:0085029 GO:0090567 GO:0099402 GO:1901360 GO:1901361 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko00230 ko00240 ko05169 map00230 map00240 map05169

Pfam Domains

Protein Families

GDA1_CD39

Protein Analysis

676

Amino Acids

74.92

Weight (kDa)

9.25

Isoelectric Point (pI)

40.92

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GDA1_CD39	PF01150	142 - 575	1.1e-52	GDA1/CD39 (nucleoside phosphatase) family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0006210)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G19180 AT4G19180 AT4G19180
fragaria_vesca	FvH4_2g37270 FvH4_2g37270 FvH4_2g37270 FvH4_2g37270 FvH4_2g37270 FvH4_2g37270
malus_domestica	MD08G1000700.v1.1
prunus_persica	Prupe.1G352700_v2.0.a1 Prupe.1G352700_v2.0.a1 Prupe.1G352700_v2.0.a1 Prupe.1G352700_v2.0.a1
pyrus_communis	pycom08g00020
rosa_chinensis	RchiOBHm_Chr6g0304431
rosa_laevigata	RLG00000010979
rosa_multiflora	Rmu_ssc0000218.1_g000051
rosa_roxburghii	Rroxscaffold_7G00163740
rosa_rugosa	Rorug06G0331500 Rorug06G0331600 Rorug06G0331700
rosa_samantha	Rh6AG444400 Rh6BG458000 Rh6CG457200 Rh6DG443900
rosa_wichuraiana	Rw6G038580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	1399
AasI	GACNNNNNNGTC	1 cut(s)	1510
Acc36I	ACCTGC	2 cut(s)	961, 1399
AccB1I	GGYRCC	1 cut(s)	1624
AccB7I	CCANNNNNTGG	1 cut(s)	938
AccII	CGCG	1 cut(s)	325
AccIII	TCCGGA	1 cut(s)	1782
AciI	CCGC	4 cut(s)	72, 117, 917, 1904
AclWI	GGATC	1 cut(s)	188
AcsI	RAATTY	4 cut(s)	437, 1232, 1453, 1881
AcvI	CACGTG	1 cut(s)	1704
AfaI	GTAC	5 cut(s)	339, 416, 466, 1613, 1779
AfeI	AGCGCT	1 cut(s)	1967
AfiI	CCNNNNNNNGG	6 cut(s)	65, 299, 901, 938, 1073, 1758
AflII	CTTAAG	1 cut(s)	1169
AflIII	ACRYGT	1 cut(s)	994
AgeI	ACCGGT	1 cut(s)	1010
AgsI	TTSAA	8 cut(s)	276, 560, 652, 677, 774, 1498, 1607, 2002
AhlI	ACTAGT	1 cut(s)	1147
AjiI	CACGTC	1 cut(s)	1408
AjnI	CCWGG	5 cut(s)	156, 292, 613, 858, 1066
AjuI	GAANNNNNNNTTGG	4 cut(s)	858, 890, 925, 957
AluBI	AGCT	7 cut(s)	181, 270, 590, 869, 1571, 1733, 1993
AluI	AGCT	7 cut(s)	181, 270, 590, 869, 1571, 1733, 1993
Alw21I	GWGCWC	4 cut(s)	636, 1321, 1423, 1995
Alw26I	GTCTC	3 cut(s)	156, 646, 1115
Alw44I	GTGCAC	1 cut(s)	632
AlwI	GGATC	1 cut(s)	188
Aor13HI	TCCGGA	1 cut(s)	1782
Aor51HI	AGCGCT	1 cut(s)	1967
AoxI	GGCC	2 cut(s)	856, 1892
ApaLI	GTGCAC	1 cut(s)	632
ApeKI	GCWGC	5 cut(s)	95, 257, 260, 757, 1571
ApoI	RAATTY	4 cut(s)	437, 1232, 1453, 1881
ArsI	GACNNNNNNTTYG	2 cut(s)	1746, 1778
AsiGI	ACCGGT	1 cut(s)	1010
Asp700I	GAANNNNTTC	1 cut(s)	555
AspLEI	GCGC	2 cut(s)	327, 1968
AspS9I	GGNCC	3 cut(s)	920, 1377, 1914
AsuC2I	CCSGG	1 cut(s)	1986
AsuHPI	GGTGA	3 cut(s)	807, 1672, 2000
AsuII	TTCGAA	2 cut(s)	221, 1229
AvaII	GGWCC	3 cut(s)	920, 1377, 1914
AxyI	CCTNAGG	2 cut(s)	60, 570
BaeGI	GKGCMC	2 cut(s)	636, 1627
BanI	GGYRCC	1 cut(s)	1624
BanII	GRGCYC	4 cut(s)	316, 435, 621, 1995
BbrPI	CACGTG	1 cut(s)	1704
BbsI	GAAGAC	1 cut(s)	548
Bbv12I	GWGCWC	4 cut(s)	636, 1321, 1423, 1995
BbvCI	CCTCAGC	1 cut(s)	1593
BbvI	GCAGC	5 cut(s)	82, 244, 247, 744, 1558
BccI	CCATC	5 cut(s)	595, 903, 1050, 1424, 1954
BciT130I	CCWGG	5 cut(s)	158, 294, 615, 860, 1068
BcnI	CCSGG	1 cut(s)	1986
BcoDI	GTCTC	3 cut(s)	156, 646, 1115
BcuI	ACTAGT	1 cut(s)	1147
BfaI	CTAG	8 cut(s)	54, 383, 474, 785, 924, 1148, 1346, 2018
BfmI	CTRYAG	3 cut(s)	741, 968, 1184
BfoI	RGCGCY	1 cut(s)	1969
BfrI	CTTAAG	1 cut(s)	1169
BfuAI	ACCTGC	2 cut(s)	961, 1399
BisI	GCNGC	5 cut(s)	96, 258, 261, 758, 1572
BlsI	GCNGC	5 cut(s)	97, 259, 262, 759, 1573
BmcAI	AGTACT	3 cut(s)	466, 1613, 1779
Bme1390I	CCNGG	6 cut(s)	158, 294, 615, 860, 1068, 1986
Bme18I	GGWCC	3 cut(s)	920, 1377, 1914
BmgBI	CACGTC	1 cut(s)	1408
BmgT120I	GGNCC	3 cut(s)	920, 1377, 1914
BmiI	GGNNCC	5 cut(s)	70, 313, 921, 1626, 1961
BmrFI	CCNGG	6 cut(s)	158, 294, 615, 860, 1068, 1986
BmrI	ACTGGG	2 cut(s)	477, 1766
BmsI	GCATC	4 cut(s)	1075, 1183, 1863, 1943
BmuI	ACTGGG	2 cut(s)	477, 1766
BpiI	GAAGAC	1 cut(s)	548
BplI	GAGNNNNNCTC	2 cut(s)	1573, 1605
BpmI	CTGGAG	4 cut(s)	140, 250, 1909, 1990
Bpu10I	CCTNAGC	1 cut(s)	1593
Bpu14I	TTCGAA	2 cut(s)	221, 1229
BpuEI	CTTGAG	1 cut(s)	791
BpuMI	CCSGG	1 cut(s)	1986
BsaAI	YACGTR	1 cut(s)	1704
BsaJI	CCNNGG	3 cut(s)	498, 614, 1066
BsaWI	WCCGGW	4 cut(s)	1010, 1751, 1782, 1956
Bsc4I	CCNNNNNNNGG	6 cut(s)	65, 299, 901, 938, 1073, 1758
Bse118I	RCCGGY	1 cut(s)	1010
Bse1I	ACTGG	4 cut(s)	422, 472, 1524, 1761
Bse21I	CCTNAGG	2 cut(s)	60, 570
Bse3DI	GCAATG	1 cut(s)	239
BseAI	TCCGGA	1 cut(s)	1782
BseBI	CCWGG	5 cut(s)	158, 294, 615, 860, 1068
BseDI	CCNNGG	3 cut(s)	498, 614, 1066
BseGI	GGATG	5 cut(s)	606, 1174, 1528, 1791, 1878
BseLI	CCNNNNNNNGG	6 cut(s)	65, 299, 901, 938, 1073, 1758
BseMI	GCAATG	1 cut(s)	239
BseMII	CTCAG	6 cut(s)	74, 151, 600, 657, 1500, 1607
BseNI	ACTGG	4 cut(s)	422, 472, 1524, 1761
BseRI	GAGGAG	8 cut(s)	222, 312, 315, 318, 321, 324, 1346, 1581
BseSI	GKGCMC	2 cut(s)	636, 1627
BseXI	GCAGC	5 cut(s)	82, 244, 247, 744, 1558
BsgI	GTGCAG	1 cut(s)	1377
Bsh1236I	CGCG	1 cut(s)	325
Bsh1285I	CGRYCG	1 cut(s)	1752
BshFI	GGCC	2 cut(s)	858, 1894
BshNI	GGYRCC	1 cut(s)	1624
BshTI	ACCGGT	1 cut(s)	1010
BsiEI	CGRYCG	1 cut(s)	1752
BsiHKAI	GWGCWC	4 cut(s)	636, 1321, 1423, 1995
BsiSI	CCGG	5 cut(s)	1011, 1752, 1783, 1957, 1986
BslFI	GGGAC	2 cut(s)	484, 933
BslI	CCNNNNNNNGG	6 cut(s)	65, 299, 901, 938, 1073, 1758
BsmAI	GTCTC	3 cut(s)	156, 646, 1115
BsmBI	CGTCTC	2 cut(s)	156, 1115
BsmFI	GGGAC	2 cut(s)	484, 933
BsmI	GAATGC	2 cut(s)	709, 1637
BsnI	GGCC	2 cut(s)	858, 1894
Bsp119I	TTCGAA	2 cut(s)	221, 1229
Bsp1286I	GDGCHC	8 cut(s)	316, 435, 621, 636, 1321, 1423, 1627, 1995
Bsp13I	TCCGGA	1 cut(s)	1782
Bsp143I	GATC	3 cut(s)	193, 595, 1289
BspACI	CCGC	4 cut(s)	72, 117, 917, 1904
BspANI	GGCC	2 cut(s)	858, 1894
BspCNI	CTCAG	6 cut(s)	73, 150, 601, 656, 1501, 1606
BspEI	TCCGGA	1 cut(s)	1782
BspFNI	CGCG	1 cut(s)	325
BspHI	TCATGA	1 cut(s)	534
BspLI	GGNNCC	5 cut(s)	70, 313, 921, 1626, 1961
BspMAI	CTGCAG	3 cut(s)	745, 972, 1188
BspMI	ACCTGC	2 cut(s)	961, 1399
BspPI	GGATC	1 cut(s)	188
BspQI	GCTCTTC	1 cut(s)	1428
BspT104I	TTCGAA	2 cut(s)	221, 1229
BspT107I	GGYRCC	1 cut(s)	1624
BspTI	CTTAAG	1 cut(s)	1169
BsrDI	GCAATG	1 cut(s)	239
BsrFI	RCCGGY	1 cut(s)	1010
BsrI	ACTGG	4 cut(s)	422, 472, 1524, 1761
BssAI	RCCGGY	1 cut(s)	1010
BssECI	CCNNGG	3 cut(s)	498, 614, 1066
BssMI	GATC	3 cut(s)	193, 595, 1289
BssT1I	CCWWGG	1 cut(s)	498
Bst2UI	CCWGG	5 cut(s)	158, 294, 615, 860, 1068
Bst4CI	ACNGT	4 cut(s)	211, 521, 1611, 1616
Bst6I	CTCTTC	5 cut(s)	731, 1118, 1428, 1574, 1933
BstAFI	CTTAAG	1 cut(s)	1169
BstAPI	GCANNNNNTGC	1 cut(s)	1355
BstBAI	YACGTR	1 cut(s)	1704
BstBI	TTCGAA	2 cut(s)	221, 1229
BstC8I	GCNNGC	5 cut(s)	121, 179, 588, 1184, 1658
BstDEI	CTNAG	7 cut(s)	60, 137, 570, 609, 643, 1509, 1593
BstF5I	GGATG	5 cut(s)	606, 1174, 1528, 1791, 1878
BstFNI	CGCG	1 cut(s)	325
BstH2I	RGCGCY	1 cut(s)	1969
BstHHI	GCGC	2 cut(s)	327, 1968
BstKTI	GATC	3 cut(s)	196, 598, 1292
BstMAI	GTCTC	3 cut(s)	156, 646, 1115
BstMBI	GATC	3 cut(s)	193, 595, 1289
BstMCI	CGRYCG	1 cut(s)	1752
BstMWI	GCNNNNNNNGC	4 cut(s)	101, 116, 1355, 1931
BstNI	CCWGG	5 cut(s)	158, 294, 615, 860, 1068
BstNSI	RCATGY	1 cut(s)	998
BstSCI	CCNGG	6 cut(s)	156, 292, 613, 858, 1066, 1984
BstSFI	CTRYAG	3 cut(s)	741, 968, 1184
BstSLI	GKGCMC	2 cut(s)	636, 1627
BstUI	CGCG	1 cut(s)	325
BstV1I	GCAGC	5 cut(s)	82, 244, 247, 744, 1558
BstV2I	GAAGAC	1 cut(s)	548
BstX2I	RGATCY	1 cut(s)	193
BstXI	CCANNNNNNTGG	1 cut(s)	1244
BstYI	RGATCY	1 cut(s)	193
Bsu36I	CCTNAGG	2 cut(s)	60, 570
BsuRI	GGCC	2 cut(s)	858, 1894
BtrI	CACGTC	1 cut(s)	1408
BtsCI	GGATG	5 cut(s)	606, 1174, 1528, 1791, 1878
BtsI	GCAGTG	3 cut(s)	287, 965, 1050
BtsIMutI	CAGTG	5 cut(s)	287, 859, 965, 1050, 1517
BveI	ACCTGC	2 cut(s)	961, 1399
Cac8I	GCNNGC	5 cut(s)	121, 179, 588, 1184, 1658
CciI	TCATGA	1 cut(s)	534
CfoI	GCGC	2 cut(s)	327, 1968
Cfr10I	RCCGGY	1 cut(s)	1010
Cfr13I	GGNCC	3 cut(s)	920, 1377, 1914
CseI	GACGC	1 cut(s)	1315
Csp6I	GTAC	5 cut(s)	338, 415, 465, 1612, 1778
CspAI	ACCGGT	1 cut(s)	1010
CviAII	CATG	6 cut(s)	349, 400, 535, 795, 995, 1857
CviQI	GTAC	5 cut(s)	338, 415, 465, 1612, 1778
DdeI	CTNAG	7 cut(s)	60, 137, 570, 609, 643, 1509, 1593
DpnI	GATC	3 cut(s)	195, 597, 1291
DpnII	GATC	3 cut(s)	193, 595, 1289
DraI	TTTAAA	2 cut(s)	1017, 1080
DrdI	GACNNNNNNGTC	1 cut(s)	1510
DseDI	GACNNNNNNGTC	1 cut(s)	1510
Eam1104I	CTCTTC	5 cut(s)	731, 1118, 1428, 1574, 1933
EarI	CTCTTC	5 cut(s)	731, 1118, 1428, 1574, 1933
Ecl136II	GAGCTC	1 cut(s)	1993
Eco130I	CCWWGG	1 cut(s)	498
Eco24I	GRGCYC	4 cut(s)	316, 435, 621, 1995
Eco32I	GATATC	1 cut(s)	187
Eco47I	GGWCC	3 cut(s)	920, 1377, 1914
Eco47III	AGCGCT	1 cut(s)	1967
Eco53kI	GAGCTC	1 cut(s)	1993
Eco72I	CACGTG	1 cut(s)	1704
Eco81I	CCTNAGG	2 cut(s)	60, 570
EcoICRI	GAGCTC	1 cut(s)	1993
EcoO109I	RGGNCCY	1 cut(s)	920
EcoRII	CCWGG	5 cut(s)	156, 292, 613, 858, 1066
EcoRV	GATATC	1 cut(s)	187
EcoT14I	CCWWGG	1 cut(s)	498
EcoT22I	ATGCAT	1 cut(s)	796
EcoT38I	GRGCYC	4 cut(s)	316, 435, 621, 1995
ErhI	CCWWGG	1 cut(s)	498
Esp3I	CGTCTC	2 cut(s)	156, 1115
FaeI	CATG	6 cut(s)	352, 403, 538, 798, 998, 1860
FaqI	GGGAC	2 cut(s)	484, 933
FatI	CATG	6 cut(s)	348, 399, 534, 794, 994, 1856
FauI	CCCGC	2 cut(s)	910, 1911
Fnu4HI	GCNGC	5 cut(s)	96, 258, 261, 758, 1572
FokI	GGATG	5 cut(s)	613, 1161, 1535, 1798, 1885
FriOI	GRGCYC	4 cut(s)	316, 435, 621, 1995
Fsp4HI	GCNGC	5 cut(s)	96, 258, 261, 758, 1572
FspBI	CTAG	8 cut(s)	54, 383, 474, 785, 924, 1148, 1346, 2018
GlaI	GCGC	2 cut(s)	326, 1967
GluI	GCNGC	5 cut(s)	96, 258, 261, 758, 1572
GsuI	CTGGAG	4 cut(s)	140, 250, 1909, 1990
HaeII	RGCGCY	1 cut(s)	1969
HaeIII	GGCC	2 cut(s)	858, 1894
HapII	CCGG	5 cut(s)	1011, 1752, 1783, 1957, 1986
HgaI	GACGC	1 cut(s)	1315
HhaI	GCGC	2 cut(s)	327, 1968
Hin1II	CATG	6 cut(s)	352, 403, 538, 798, 998, 1860
Hin6I	GCGC	2 cut(s)	325, 1966
HinP1I	GCGC	2 cut(s)	325, 1966
HindIII	AAGCTT	1 cut(s)	867
HinfI	GANTC	5 cut(s)	43, 141, 770, 1511, 1972
HpaII	CCGG	5 cut(s)	1011, 1752, 1783, 1957, 1986
HphI	GGTGA	3 cut(s)	807, 1672, 2000
Hpy166II	GTNNAC	6 cut(s)	634, 815, 1039, 1343, 1436, 1707
Hpy188I	TCNGA	7 cut(s)	140, 528, 600, 1305, 1372, 1510, 2025
Hpy8I	GTNNAC	6 cut(s)	634, 815, 1039, 1343, 1436, 1707
HpyAV	CCTTC	7 cut(s)	143, 355, 545, 646, 1153, 1235, 2008
HpyCH4III	ACNGT	4 cut(s)	211, 521, 1611, 1616
HpyCH4IV	ACGT	2 cut(s)	1407, 1703
HpyF10VI	GCNNNNNNNGC	4 cut(s)	101, 116, 1355, 1931
HpyF3I	CTNAG	7 cut(s)	60, 137, 570, 609, 643, 1509, 1593
HpySE526I	ACGT	2 cut(s)	1407, 1703
Hsp92II	CATG	6 cut(s)	352, 403, 538, 798, 998, 1860
HspAI	GCGC	2 cut(s)	325, 1966
Kpn2I	TCCGGA	1 cut(s)	1782
Kzo9I	GATC	3 cut(s)	193, 595, 1289
LguI	GCTCTTC	1 cut(s)	1428
LmnI	GCTCC	4 cut(s)	311, 1201, 1324, 1594
Lsp1109I	GCAGC	5 cut(s)	82, 244, 247, 744, 1558
LweI	GCATC	4 cut(s)	1075, 1183, 1863, 1943
MaeI	CTAG	8 cut(s)	54, 383, 474, 785, 924, 1148, 1346, 2018
MaeII	ACGT	2 cut(s)	1407, 1703
MaeIII	GTNAC	5 cut(s)	211, 973, 1403, 1515, 1769
MalI	GATC	3 cut(s)	195, 597, 1291
MboI	GATC	3 cut(s)	193, 595, 1289
MfeI	CAATTG	1 cut(s)	1867
MflI	RGATCY	1 cut(s)	193
MhlI	GDGCHC	8 cut(s)	316, 435, 621, 636, 1321, 1423, 1627, 1995
MlyI	GAGTC	4 cut(s)	52, 135, 1520, 1981
Mph1103I	ATGCAT	1 cut(s)	796
MroI	TCCGGA	1 cut(s)	1782
MroXI	GAANNNNTTC	1 cut(s)	555
MseI	TTAA	7 cut(s)	9, 545, 891, 1016, 1079, 1170, 1362
MslI	CAYNNNNRTG	1 cut(s)	1855
MspA1I	CMGCKG	2 cut(s)	74, 1906
MspCI	CTTAAG	1 cut(s)	1169
MspI	CCGG	5 cut(s)	1011, 1752, 1783, 1957, 1986
MspR9I	CCNGG	6 cut(s)	158, 294, 615, 860, 1068, 1986
MssI	GTTTAAAC	1 cut(s)	1017
MunI	CAATTG	1 cut(s)	1867
Mva1269I	GAATGC	2 cut(s)	709, 1637
MvaI	CCWGG	5 cut(s)	158, 294, 615, 860, 1068
MvnI	CGCG	1 cut(s)	325
MwoI	GCNNNNNNNGC	4 cut(s)	101, 116, 1355, 1931
NciI	CCSGG	1 cut(s)	1986
NdeII	GATC	3 cut(s)	193, 595, 1289
NlaIII	CATG	6 cut(s)	352, 403, 538, 798, 998, 1860
NlaIV	GGNNCC	5 cut(s)	70, 313, 921, 1626, 1961
NmeAIII	GCCGAG	1 cut(s)	786
NmuCI	GTSAC	3 cut(s)	211, 1403, 1515
NsiI	ATGCAT	1 cut(s)	796
NspI	RCATGY	1 cut(s)	998
NspV	TTCGAA	2 cut(s)	221, 1229
PagI	TCATGA	1 cut(s)	534
PaqCI	CACCTGC	1 cut(s)	1399
PciI	ACATGT	1 cut(s)	994
PciSI	GCTCTTC	1 cut(s)	1428
PcsI	WCGNNNNNNNCGW	1 cut(s)	1404
PctI	GAATGC	2 cut(s)	709, 1637
PdmI	GAANNNNTTC	1 cut(s)	555
PfeI	GAWTC	1 cut(s)	770
PflMI	CCANNNNNTGG	1 cut(s)	938
PfoI	TCCNGGA	1 cut(s)	156
PinAI	ACCGGT	1 cut(s)	1010
PkrI	GCNGC	5 cut(s)	97, 259, 262, 759, 1573
PleI	GAGTC	4 cut(s)	51, 135, 1519, 1980
PmaCI	CACGTG	1 cut(s)	1704
PmeI	GTTTAAAC	1 cut(s)	1017
PmlI	CACGTG	1 cut(s)	1704
PpsI	GAGTC	4 cut(s)	51, 135, 1519, 1980
Ppu21I	YACGTR	1 cut(s)	1704
PpuMI	RGGWCCY	1 cut(s)	920
PscI	ACATGT	1 cut(s)	994
Psp124BI	GAGCTC	1 cut(s)	1995
Psp5II	RGGWCCY	1 cut(s)	920
Psp6I	CCWGG	5 cut(s)	156, 292, 613, 858, 1066
PspCI	CACGTG	1 cut(s)	1704
PspGI	CCWGG	5 cut(s)	156, 292, 613, 858, 1066
PspN4I	GGNNCC	5 cut(s)	70, 313, 921, 1626, 1961
PspPI	GGNCC	3 cut(s)	920, 1377, 1914
PspPPI	RGGWCCY	1 cut(s)	920
PstI	CTGCAG	3 cut(s)	745, 972, 1188
PsuI	RGATCY	1 cut(s)	193
RsaI	GTAC	5 cut(s)	339, 416, 466, 1613, 1779
RsaNI	GTAC	5 cut(s)	338, 415, 465, 1612, 1778
RseI	CAYNNNNRTG	1 cut(s)	1855
SacI	GAGCTC	1 cut(s)	1995
SapI	GCTCTTC	1 cut(s)	1428
SaqAI	TTAA	7 cut(s)	9, 545, 891, 1016, 1079, 1170, 1362
SatI	GCNGC	5 cut(s)	96, 258, 261, 758, 1572
Sau3AI	GATC	3 cut(s)	193, 595, 1289
Sau96I	GGNCC	3 cut(s)	920, 1377, 1914
ScaI	AGTACT	3 cut(s)	466, 1613, 1779
SchI	GAGTC	4 cut(s)	52, 135, 1520, 1981
ScrFI	CCNGG	6 cut(s)	158, 294, 615, 860, 1068, 1986
SduI	GDGCHC	8 cut(s)	316, 435, 621, 636, 1321, 1423, 1627, 1995
SfaNI	GCATC	4 cut(s)	1075, 1183, 1863, 1943
SfcI	CTRYAG	3 cut(s)	741, 968, 1184
SfuI	TTCGAA	2 cut(s)	221, 1229
SinI	GGWCC	3 cut(s)	920, 1377, 1914
SmiMI	CAYNNNNRTG	1 cut(s)	1855
SmlI	CTYRAG	2 cut(s)	806, 1169
SmoI	CTYRAG	2 cut(s)	806, 1169
SpeI	ACTAGT	1 cut(s)	1147
SsiI	CCGC	4 cut(s)	72, 117, 917, 1904
SspMI	CTAG	8 cut(s)	54, 383, 474, 785, 924, 1148, 1346, 2018
SstI	GAGCTC	1 cut(s)	1995
StyD4I	CCNGG	6 cut(s)	156, 292, 613, 858, 1066, 1984
StyI	CCWWGG	1 cut(s)	498
TaaI	ACNGT	4 cut(s)	211, 521, 1611, 1616
TaiI	ACGT	2 cut(s)	1410, 1706
TaqI	TCGA	9 cut(s)	13, 41, 189, 221, 621, 1116, 1229, 1398, 1748
TatI	WGTACW	3 cut(s)	464, 1611, 1777
TfiI	GAWTC	1 cut(s)	770
Tru1I	TTAA	7 cut(s)	9, 545, 891, 1016, 1079, 1170, 1362
Tru9I	TTAA	7 cut(s)	9, 545, 891, 1016, 1079, 1170, 1362
TscAI	CASTG	5 cut(s)	294, 859, 972, 1057, 1524
TseFI	GTSAC	3 cut(s)	211, 1403, 1515
TseI	GCWGC	5 cut(s)	95, 257, 260, 757, 1571
Tsp45I	GTSAC	3 cut(s)	211, 1403, 1515
TspDTI	ATGAA	7 cut(s)	228, 337, 551, 951, 1005, 1591, 1802
TspRI	CASTG	5 cut(s)	294, 859, 972, 1057, 1524
Van91I	CCANNNNNTGG	1 cut(s)	938
Vha464I	CTTAAG	1 cut(s)	1169
VneI	GTGCAC	1 cut(s)	632
VpaK11BI	GGWCC	3 cut(s)	920, 1377, 1914
XapI	RAATTY	4 cut(s)	437, 1232, 1453, 1881
XbaI	TCTAGA	1 cut(s)	784
XceI	RCATGY	1 cut(s)	998
XcmI	CCANNNNNNNNNTGG	2 cut(s)	675, 1884
XmnI	GAANNNNTTC	1 cut(s)	555
XspI	CTAG	8 cut(s)	54, 383, 474, 785, 924, 1148, 1346, 2018
ZrmI	AGTACT	3 cut(s)	466, 1613, 1779
Zsp2I	ATGCAT	1 cut(s)	796

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.