RchiOBHm_Chr6g0306341
ERF Family

belongs to the protein kinase superfamily

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
Physical Location & Seq
Forward (+)
65062075 .. 65062499
425 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ27536

Sequence Viewer

Length: 273 bp
ATGGGTTTGTTAAAGGTGGAGACTTGGGATGGGAGCAAATCAAAGGGAAGGAAGAAGAAGAAGAAGGATGAGGCTGTGGAGGAAACTGGGTGTTGGATTAAGTTCTCTTTTGGGATTTGCATGCCTTCTTCAAGATCCAAAGTTGATAGCACCCTGACTGGGACTACTATATCTTTTGGTAATTTGCTACTGTCCTTGTTTTTCTTTTTTGGCAAATTCTTGTCAAGCTGCATTAATTTCAAGGATGGGGGTTGTTCTGTTTTTGGGCAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

90

Amino Acids

9.92

Weight (kDa)

9.36

Isoelectric Point (pI)

28.17

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 129
AcsI RAATTY 1 cut(s) 215
AfiI CCNNNNNNNGG 1 cut(s) 159
AgsI TTSAA 2 cut(s) 132, 241
AluBI AGCT 1 cut(s) 228
AluI AGCT 1 cut(s) 228
Alw26I GTCTC 1 cut(s) 14
AlwI GGATC 1 cut(s) 129
ApeKI GCWGC 1 cut(s) 228
ApoI RAATTY 1 cut(s) 215
AseI ATTAAT 1 cut(s) 234
BbvI GCAGC 1 cut(s) 215
BccI CCATC 2 cut(s) 23, 239
BcoDI GTCTC 1 cut(s) 14
BisI GCNGC 1 cut(s) 229
BlsI GCNGC 1 cut(s) 230
BmrI ACTGGG 2 cut(s) 96, 168
BmuI ACTGGG 2 cut(s) 96, 168
Bsc4I CCNNNNNNNGG 1 cut(s) 159
Bse1I ACTGG 2 cut(s) 91, 163
BseGI GGATG 3 cut(s) 34, 73, 250
BseLI CCNNNNNNNGG 1 cut(s) 159
BseNI ACTGG 2 cut(s) 91, 163
BseXI GCAGC 1 cut(s) 215
BslFI GGGAC 1 cut(s) 175
BslI CCNNNNNNNGG 1 cut(s) 159
BsmAI GTCTC 1 cut(s) 14
BsmFI GGGAC 1 cut(s) 175
Bsp143I GATC 1 cut(s) 134
BspPI GGATC 1 cut(s) 129
BsrI ACTGG 2 cut(s) 91, 163
BssMI GATC 1 cut(s) 134
Bst4CI ACNGT 1 cut(s) 192
BstC8I GCNNGC 1 cut(s) 122
BstF5I GGATG 3 cut(s) 34, 73, 250
BstKTI GATC 1 cut(s) 137
BstMAI GTCTC 1 cut(s) 14
BstMBI GATC 1 cut(s) 134
BstNSI RCATGY 1 cut(s) 124
BstV1I GCAGC 1 cut(s) 215
BstX2I RGATCY 1 cut(s) 134
BstYI RGATCY 1 cut(s) 134
BtsCI GGATG 3 cut(s) 34, 73, 250
Cac8I GCNNGC 1 cut(s) 122
CviAII CATG 1 cut(s) 121
CviJI RGCY 2 cut(s) 74, 228
CviKI_1 RGCY 2 cut(s) 74, 228
DpnI GATC 1 cut(s) 136
DpnII GATC 1 cut(s) 134
FaeI CATG 1 cut(s) 124
FaiI YATR 2 cut(s) 122, 170
FaqI GGGAC 1 cut(s) 175
FatI CATG 1 cut(s) 120
Fnu4HI GCNGC 1 cut(s) 229
FokI GGATG 3 cut(s) 41, 80, 257
Fsp4HI GCNGC 1 cut(s) 229
GluI GCNGC 1 cut(s) 229
Hin1II CATG 1 cut(s) 124
Hpy188III TCNNGA 1 cut(s) 132
HpyAV CCTTC 3 cut(s) 42, 58, 135
HpyCH4III ACNGT 1 cut(s) 192
HpyCH4V TGCA 2 cut(s) 120, 231
Hsp92II CATG 1 cut(s) 124
Kzo9I GATC 1 cut(s) 134
LmnI GCTCC 1 cut(s) 33
LpnPI CCDG 3 cut(s) 72, 144, 167
Lsp1109I GCAGC 1 cut(s) 215
MalI GATC 1 cut(s) 136
MboI GATC 1 cut(s) 134
MboII GAAGA 5 cut(s) 64, 67, 70, 73, 120
MflI RGATCY 1 cut(s) 134
MluCI AATT 3 cut(s) 181, 215, 235
MmeI TCCRAC 1 cut(s) 74
MnlI CCTC 2 cut(s) 64, 73
MseI TTAA 3 cut(s) 11, 99, 234
NdeII GATC 1 cut(s) 134
NlaIII CATG 1 cut(s) 124
NspI RCATGY 1 cut(s) 124
PaeI GCATGC 1 cut(s) 124
PkrI GCNGC 1 cut(s) 230
PshBI ATTAAT 1 cut(s) 234
PsuI RGATCY 1 cut(s) 134
SaqAI TTAA 3 cut(s) 11, 99, 234
SatI GCNGC 1 cut(s) 229
Sau3AI GATC 1 cut(s) 134
SetI ASST 2 cut(s) 18, 230
SphI GCATGC 1 cut(s) 124
Sse9I AATT 3 cut(s) 181, 215, 235
TaaI ACNGT 1 cut(s) 192
TasI AATT 3 cut(s) 181, 215, 235
Tru1I TTAA 3 cut(s) 11, 99, 234
Tru9I TTAA 3 cut(s) 11, 99, 234
TseI GCWGC 1 cut(s) 228
VspI ATTAAT 1 cut(s) 234
XapI RAATTY 1 cut(s) 215
XceI RCATGY 1 cut(s) 124
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.