Rh5BG026100
ERF Family

belongs to the protein kinase superfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5B
OG0016916
Physical Location & Seq
Forward (+)
1842112 .. 1850055
7944 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5BG026100.1

Sequence Viewer

Length: 882 bp
ATGGCAATATACCAAATTCACTTTCCCTCTAATCCTATTCACTTTAGCAAACCTAACATTCATATTTGCGAGCAGAAAAGAAAAAAACTTGTGTTCCTCTCTGATCATACGAACACCGATTATCCAAGCCTCCGGGTTACCTCCGTTTTGAGTAGGTTCCTTTCTTGGAGTTTGATTGAGATAAGTTCTGAACACTTGTTTATGGCCTTATTGTTCTTGAATGTCGGTGGCATTAAGAAGAACTTAGATTACGAGAATCTTTCCATAATATTTTCTGGAGCAAACTTTGATTGGATTGGAAAGATTTCGACATCCTTGGGCACAGCTGGAGTTGAATGGCATCTTTTTCAATGTTGGACATTTGTATACAGACACGTACTTCAGATTCAGAATATTTATAGGAATTTCAAATATGCTCTTCAACACAGGAAGATACCTCTAAAAACTGGAGATTTTGAGCATAGACTAGTCATGTCAGGTCCTTCACATTGGAGCATCTCACTAAAGTTACTGAGGAAAGGCTACGGAAGCAATATGGTTGTGTCATCATCGGGTCGCGGGCTAACTCACAGCTCTCACCCATGGATATTGCAGATCTATTGTAAGAACGAGTTCTATTCATGCATCTATCGCAAGAGTGTTGGCCTAATTTATAGGTGGAGACTTGGGATGGGAGAAAATCAAAGGGAAGGAAGGAAGAAGAAGAATGATGAGGCTGTGGAGGAAACTGGGTGTTGGAGTAAGTTCTCTTTTGGGATTTGCATGCCTTCTTCAAGATCCAAAGTTGATAGCACCATGACTGGGACTACTATATCTTTTGTACAAAATACAGCCGATTTCTTATATGAGTTGGTGATTCCTTCCTCGGTAGCGTATGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Pkinase Pkinase_Tyr

Protein Analysis

293

Amino Acids

33.79

Weight (kDa)

9.42

Isoelectric Point (pI)

35.83

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 366
AccII CGCG 1 cut(s) 558
AciI CCGC 1 cut(s) 558
AclWI GGATC 1 cut(s) 771
AcsI RAATTY 2 cut(s) 15, 403
AcuI CTGAAG 1 cut(s) 365
AfaI GTAC 2 cut(s) 378, 822
AfiI CCNNNNNNNGG 1 cut(s) 801
AflIII ACRYGT 1 cut(s) 373
AgsI TTSAA 6 cut(s) 220, 335, 350, 409, 422, 774
AhlI ACTAGT 1 cut(s) 466
AjuI GAANNNNNNNTTGG 1 cut(s) 38
AluBI AGCT 2 cut(s) 326, 573
AluI AGCT 2 cut(s) 326, 573
Alw26I GTCTC 1 cut(s) 655
AlwI GGATC 1 cut(s) 771
AoxI GGCC 2 cut(s) 204, 643
ApoI RAATTY 2 cut(s) 15, 403
Asp700I GAANNNNTTC 2 cut(s) 304, 611
AspS9I GGNCC 1 cut(s) 479
AsuC2I CCSGG 1 cut(s) 134
AsuHPI GGTGA 2 cut(s) 569, 865
AvaII GGWCC 1 cut(s) 479
BaeGI GKGCMC 1 cut(s) 323
BccI CCATC 1 cut(s) 664
BclI TGATCA 1 cut(s) 103
BcnI CCSGG 1 cut(s) 134
BcoDI GTCTC 1 cut(s) 655
BcuI ACTAGT 1 cut(s) 466
BfaI CTAG 1 cut(s) 467
BglII AGATCT 1 cut(s) 594
Bme1390I CCNGG 1 cut(s) 134
Bme18I GGWCC 1 cut(s) 479
BmgT120I GGNCC 1 cut(s) 479
BmiI GGNNCC 1 cut(s) 158
BmrFI CCNGG 1 cut(s) 134
BmrI ACTGGG 2 cut(s) 738, 810
BmsI GCATC 3 cut(s) 349, 504, 633
BmuI ACTGGG 2 cut(s) 738, 810
BpmI CTGGAG 3 cut(s) 297, 348, 468
BpuMI CCSGG 1 cut(s) 134
BsaAI YACGTR 1 cut(s) 376
BsaJI CCNNGG 3 cut(s) 315, 581, 864
Bsc4I CCNNNNNNNGG 1 cut(s) 801
Bse1I ACTGG 3 cut(s) 451, 733, 805
BseDI CCNNGG 3 cut(s) 315, 581, 864
BseGI GGATG 2 cut(s) 311, 675
BseLI CCNNNNNNNGG 1 cut(s) 801
BseMII CTCAG 1 cut(s) 503
BseNI ACTGG 3 cut(s) 451, 733, 805
BseSI GKGCMC 1 cut(s) 323
Bsh1236I CGCG 1 cut(s) 558
BshFI GGCC 2 cut(s) 206, 645
BsiSI CCGG 1 cut(s) 133
BslFI GGGAC 1 cut(s) 817
BslI CCNNNNNNNGG 1 cut(s) 801
BsmAI GTCTC 1 cut(s) 655
BsmFI GGGAC 1 cut(s) 817
BsnI GGCC 2 cut(s) 206, 645
Bsp1286I GDGCHC 1 cut(s) 323
Bsp1407I TGTACA 1 cut(s) 820
Bsp143I GATC 3 cut(s) 103, 594, 776
Bsp19I CCATGG 1 cut(s) 581
BspACI CCGC 1 cut(s) 558
BspANI GGCC 2 cut(s) 206, 645
BspCNI CTCAG 1 cut(s) 504
BspFNI CGCG 1 cut(s) 558
BspLI GGNNCC 1 cut(s) 158
BspPI GGATC 1 cut(s) 771
BspQI GCTCTTC 1 cut(s) 423
BsrGI TGTACA 1 cut(s) 820
BsrI ACTGG 3 cut(s) 451, 733, 805
BssECI CCNNGG 3 cut(s) 315, 581, 864
BssMI GATC 3 cut(s) 103, 594, 776
BssNAI GTATAC 1 cut(s) 367
BssT1I CCWWGG 2 cut(s) 315, 581
Bst1107I GTATAC 1 cut(s) 367
Bst6I CTCTTC 1 cut(s) 423
BstAUI TGTACA 1 cut(s) 820
BstBAI YACGTR 1 cut(s) 376
BstC8I GCNNGC 3 cut(s) 71, 560, 764
BstDEI CTNAG 2 cut(s) 244, 512
BstDSI CCRYGG 1 cut(s) 581
BstEII GGTNACC 1 cut(s) 136
BstF5I GGATG 2 cut(s) 311, 675
BstFNI CGCG 1 cut(s) 558
BstKTI GATC 3 cut(s) 106, 597, 779
BstMAI GTCTC 1 cut(s) 655
BstMBI GATC 3 cut(s) 103, 594, 776
BstMWI GCNNNNNNNGC 2 cut(s) 528, 630
BstNSI RCATGY 1 cut(s) 766
BstPI GGTNACC 1 cut(s) 136
BstSCI CCNGG 1 cut(s) 132
BstSLI GKGCMC 1 cut(s) 323
BstUI CGCG 1 cut(s) 558
BstX2I RGATCY 2 cut(s) 594, 776
BstYI RGATCY 2 cut(s) 594, 776
BstZ17I GTATAC 1 cut(s) 367
BsuRI GGCC 2 cut(s) 206, 645
BtgI CCRYGG 1 cut(s) 581
BtsCI GGATG 2 cut(s) 311, 675
Cac8I GCNNGC 3 cut(s) 71, 560, 764
Cfr13I GGNCC 1 cut(s) 479
Csp6I GTAC 2 cut(s) 377, 821
CviAII CATG 5 cut(s) 472, 582, 621, 763, 796
CviJI RGCY 9 cut(s) 129, 206, 326, 522, 562, 573, 645, 716, 833
CviKI_1 RGCY 9 cut(s) 129, 206, 326, 522, 562, 573, 645, 716, 833
CviQI GTAC 2 cut(s) 377, 821
DdeI CTNAG 2 cut(s) 244, 512
DpnI GATC 3 cut(s) 105, 596, 778
DpnII GATC 3 cut(s) 103, 594, 776
Eam1104I CTCTTC 1 cut(s) 423
EarI CTCTTC 1 cut(s) 423
Eco130I CCWWGG 2 cut(s) 315, 581
Eco47I GGWCC 1 cut(s) 479
Eco57I CTGAAG 1 cut(s) 365
Eco91I GGTNACC 1 cut(s) 136
EcoO109I RGGNCCY 1 cut(s) 479
EcoO65I GGTNACC 1 cut(s) 136
EcoT14I CCWWGG 2 cut(s) 315, 581
EcoT22I ATGCAT 1 cut(s) 626
ErhI CCWWGG 2 cut(s) 315, 581
FaeI CATG 5 cut(s) 475, 585, 624, 766, 799
FalI AAGNNNNNCTT 2 cut(s) 227, 259
FaqI GGGAC 1 cut(s) 817
FatI CATG 5 cut(s) 471, 581, 620, 762, 795
FauI CCCGC 1 cut(s) 551
FbaI TGATCA 1 cut(s) 103
FblI GTMKAC 1 cut(s) 366
FokI GGATG 2 cut(s) 298, 682
FspBI CTAG 1 cut(s) 467
GsuI CTGGAG 3 cut(s) 297, 348, 468
HaeIII GGCC 2 cut(s) 206, 645
HapII CCGG 1 cut(s) 133
Hin1II CATG 5 cut(s) 475, 585, 624, 766, 799
HinfI GANTC 3 cut(s) 256, 385, 856
HpaII CCGG 1 cut(s) 133
HphI GGTGA 2 cut(s) 569, 865
Hpy166II GTNNAC 1 cut(s) 367
Hpy188I TCNGA 4 cut(s) 103, 190, 384, 390
Hpy188III TCNNGA 3 cut(s) 217, 276, 774
Hpy8I GTNNAC 1 cut(s) 367
HpyAV CCTTC 5 cut(s) 492, 683, 687, 777, 870
HpyCH4IV ACGT 1 cut(s) 375
HpyCH4V TGCA 3 cut(s) 592, 624, 762
HpyF10VI GCNNNNNNNGC 2 cut(s) 528, 630
HpyF3I CTNAG 2 cut(s) 244, 512
HpySE526I ACGT 1 cut(s) 375
Hsp92II CATG 5 cut(s) 475, 585, 624, 766, 799
Ksp22I TGATCA 1 cut(s) 103
Kzo9I GATC 3 cut(s) 103, 594, 776
LguI GCTCTTC 1 cut(s) 423
LmnI GCTCC 2 cut(s) 278, 492
LpnPI CCDG 8 cut(s) 146, 261, 312, 412, 432, 462, 714, 786
LweI GCATC 3 cut(s) 349, 504, 633
MaeI CTAG 1 cut(s) 467
MaeII ACGT 1 cut(s) 375
MaeIII GTNAC 2 cut(s) 136, 507
MalI GATC 3 cut(s) 105, 596, 778
MboI GATC 3 cut(s) 103, 594, 776
MboII GAAGA 7 cut(s) 250, 410, 442, 709, 712, 715, 762
MflI RGATCY 2 cut(s) 594, 776
MhlI GDGCHC 1 cut(s) 323
MluCI AATT 3 cut(s) 15, 403, 648
MmeI TCCRAC 2 cut(s) 335, 716
MnlI CCTC 9 cut(s) 37, 107, 140, 151, 447, 507, 706, 715, 874
Mph1103I ATGCAT 1 cut(s) 626
MroXI GAANNNNTTC 2 cut(s) 304, 611
MseI TTAA 1 cut(s) 234
MspA1I CMGCKG 1 cut(s) 326
MspI CCGG 1 cut(s) 133
MspR9I CCNGG 1 cut(s) 134
MvnI CGCG 1 cut(s) 558
MwoI GCNNNNNNNGC 2 cut(s) 528, 630
NciI CCSGG 1 cut(s) 134
NcoI CCATGG 1 cut(s) 581
NdeII GATC 3 cut(s) 103, 594, 776
NlaIII CATG 5 cut(s) 475, 585, 624, 766, 799
NlaIV GGNNCC 1 cut(s) 158
NsiI ATGCAT 1 cut(s) 626
NspI RCATGY 1 cut(s) 766
PaeI GCATGC 1 cut(s) 766
PciSI GCTCTTC 1 cut(s) 423
PdmI GAANNNNTTC 2 cut(s) 304, 611
PfeI GAWTC 3 cut(s) 256, 385, 856
Ppu21I YACGTR 1 cut(s) 376
PpuMI RGGWCCY 1 cut(s) 479
Psp5II RGGWCCY 1 cut(s) 479
PspEI GGTNACC 1 cut(s) 136
PspN4I GGNNCC 1 cut(s) 158
PspPI GGNCC 1 cut(s) 479
PspPPI RGGWCCY 1 cut(s) 479
PsrI GAACNNNNNNTAC 2 cut(s) 233, 265
PsuI RGATCY 2 cut(s) 594, 776
PvuII CAGCTG 1 cut(s) 326
RsaI GTAC 2 cut(s) 378, 822
RsaNI GTAC 2 cut(s) 377, 821
SapI GCTCTTC 1 cut(s) 423
SaqAI TTAA 1 cut(s) 234
Sau3AI GATC 3 cut(s) 103, 594, 776
Sau96I GGNCC 1 cut(s) 479
ScrFI CCNGG 1 cut(s) 134
SduI GDGCHC 1 cut(s) 323
SetI ASST 9 cut(s) 55, 143, 158, 328, 378, 439, 481, 575, 659
SfaNI GCATC 3 cut(s) 349, 504, 633
SinI GGWCC 1 cut(s) 479
SpeI ACTAGT 1 cut(s) 466
SphI GCATGC 1 cut(s) 766
Sse9I AATT 3 cut(s) 15, 403, 648
SsiI CCGC 1 cut(s) 558
SspI AATATT 2 cut(s) 270, 394
SspMI CTAG 1 cut(s) 467
StyD4I CCNGG 1 cut(s) 132
StyI CCWWGG 2 cut(s) 315, 581
TaiI ACGT 1 cut(s) 378
TaqI TCGA 1 cut(s) 308
TasI AATT 3 cut(s) 15, 403, 648
TatI WGTACW 1 cut(s) 820
TfiI GAWTC 3 cut(s) 256, 385, 856
Tru1I TTAA 1 cut(s) 234
Tru9I TTAA 1 cut(s) 234
TspDTI ATGAA 2 cut(s) 50, 609
TspGWI ACGGA 2 cut(s) 133, 540
VpaK11BI GGWCC 1 cut(s) 479
XapI RAATTY 2 cut(s) 15, 403
XceI RCATGY 1 cut(s) 766
XmiI GTMKAC 1 cut(s) 366
XmnI GAANNNNTTC 2 cut(s) 304, 611
XspI CTAG 1 cut(s) 467
Zsp2I ATGCAT 1 cut(s) 626
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.