Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr4

Orthogroup ID

OG0016916

Physical Location & Seq

Genomic Coordinates Forward (+)

12517222 .. 12522803

Gene Structure 5582 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw4G006150.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 477 bp

ATGGGTTTGTTAAAGGTGGAGACTTGGGATGGGAGCAAATCAAAGGGAAGGAAGAAGAAGAAGAAGGATGAGGCTGTGGAGGAAACTGGGTGTTGGATTAAGTTCTCTTTTGGGATTTGCACGCCTTCTTCAAGATCCAAAGTTGATAGCACCATGACTGGGACTACTATATCTTTTGGCACCAAGGAGCCAGTTGCGTATGGAGAATTGATCTCCATTTGGGGCATTGGACCGAGTGTTAATGGGAAGTTGATTCTGGAGACCATGCCAAGCGAAGCCAGCCAGACCGCCTCGCTCACCTGTAAGTACCACCCCCTGAGGGAGTGTACTCCTACAAACCCAATCCAGATCCAAACCCGGAACGGTCTTACCTCCGCTGCTACTAGGTATGTACGACAACCACCCGAAAGAAGAAGAACAGAAGACGACGGCCCACCAAAGATCAATGGCCATCCTGCAATGCATCGGAGAAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

158

Amino Acids

17.49

Weight (kDa)

9.66

Isoelectric Point (pI)

50.18

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016916)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g08450
rosa_chinensis	RchiOBHm_Chr2g0100621 RchiOBHm_Chr4g0403451 RchiOBHm_Chr4g0440211 RchiOBHm_Chr5g0076811 RchiOBHm_Chr6g0271291 RchiOBHm_Chr6g0306341 RchiOBHm_Chr7g0232751
rosa_laevigata	RLG00000029038
rosa_samantha	Rh1CG020500 Rh5BG026100 Rh7AG431200 Rh7CG449800
rosa_wichuraiana	Rw4G006150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	179
AciI	CCGC	2 cut(s)	288, 375
AclWI	GGATC	2 cut(s)	129, 343
AcoI	YGGCCR	1 cut(s)	448
AfaI	GTAC	3 cut(s)	308, 328, 393
AfiI	CCNNNNNNNGG	2 cut(s)	159, 319
AgsI	TTSAA	1 cut(s)	132
Alw26I	GTCTC	2 cut(s)	14, 254
AlwI	GGATC	2 cut(s)	129, 343
AoxI	GGCC	2 cut(s)	430, 448
ApeKI	GCWGC	1 cut(s)	377
AspS9I	GGNCC	2 cut(s)	230, 431
AsuC2I	CCSGG	1 cut(s)	358
AsuHPI	GGTGA	1 cut(s)	289
AvaII	GGWCC	1 cut(s)	230
AxyI	CCTNAGG	1 cut(s)	317
BalI	TGGCCA	1 cut(s)	450
BanI	GGYRCC	1 cut(s)	179
BbsI	GAAGAC	1 cut(s)	429
BbvI	GCAGC	1 cut(s)	364
BccI	CCATC	2 cut(s)	23, 459
BceAI	ACGGC	1 cut(s)	445
BcnI	CCSGG	1 cut(s)	358
BcoDI	GTCTC	2 cut(s)	14, 254
BfaI	CTAG	1 cut(s)	384
BisI	GCNGC	1 cut(s)	378
BlsI	GCNGC	1 cut(s)	379
Bme1390I	CCNGG	1 cut(s)	358
Bme18I	GGWCC	1 cut(s)	230
BmgT120I	GGNCC	2 cut(s)	230, 431
BmiI	GGNNCC	2 cut(s)	181, 189
BmrFI	CCNGG	1 cut(s)	358
BmrI	ACTGGG	2 cut(s)	96, 168
BmsI	GCATC	1 cut(s)	472
BmuI	ACTGGG	2 cut(s)	96, 168
BpiI	GAAGAC	1 cut(s)	429
BpmI	CTGGAG	1 cut(s)	278
BpuMI	CCSGG	1 cut(s)	358
BsaI	GGTCTC	1 cut(s)	254
BsaJI	CCNNGG	1 cut(s)	183
Bsc4I	CCNNNNNNNGG	2 cut(s)	159, 319
Bse1I	ACTGG	3 cut(s)	91, 163, 191
Bse21I	CCTNAGG	1 cut(s)	317
Bse3DI	GCAATG	1 cut(s)	465
BseDI	CCNNGG	1 cut(s)	183
BseGI	GGATG	3 cut(s)	34, 73, 451
BseLI	CCNNNNNNNGG	2 cut(s)	159, 319
BseMI	GCAATG	1 cut(s)	465
BseMII	CTCAG	1 cut(s)	308
BseNI	ACTGG	3 cut(s)	91, 163, 191
BseXI	GCAGC	1 cut(s)	364
BshFI	GGCC	2 cut(s)	432, 450
BshNI	GGYRCC	1 cut(s)	179
BsiSI	CCGG	1 cut(s)	358
BslFI	GGGAC	1 cut(s)	175
BslI	CCNNNNNNNGG	2 cut(s)	159, 319
BsmAI	GTCTC	2 cut(s)	14, 254
BsmFI	GGGAC	1 cut(s)	175
BsnI	GGCC	2 cut(s)	432, 450
Bso31I	GGTCTC	1 cut(s)	254
Bsp143I	GATC	4 cut(s)	134, 210, 348, 441
BspACI	CCGC	2 cut(s)	288, 375
BspANI	GGCC	2 cut(s)	432, 450
BspCNI	CTCAG	1 cut(s)	309
BspLI	GGNNCC	2 cut(s)	181, 189
BspPI	GGATC	2 cut(s)	129, 343
BspT107I	GGYRCC	1 cut(s)	179
BspTNI	GGTCTC	1 cut(s)	254
BsrDI	GCAATG	1 cut(s)	465
BsrI	ACTGG	3 cut(s)	91, 163, 191
BssECI	CCNNGG	1 cut(s)	183
BssMI	GATC	4 cut(s)	134, 210, 348, 441
BssT1I	CCWWGG	1 cut(s)	183
Bst4CI	ACNGT	1 cut(s)	365
BstC8I	GCNNGC	2 cut(s)	122, 280
BstDEI	CTNAG	1 cut(s)	317
BstF5I	GGATG	3 cut(s)	34, 73, 451
BstKTI	GATC	4 cut(s)	137, 213, 351, 444
BstMAI	GTCTC	2 cut(s)	14, 254
BstMBI	GATC	4 cut(s)	134, 210, 348, 441
BstMWI	GCNNNNNNNGC	1 cut(s)	279
BstSCI	CCNGG	1 cut(s)	356
BstV1I	GCAGC	1 cut(s)	364
BstV2I	GAAGAC	1 cut(s)	429
BstX2I	RGATCY	2 cut(s)	134, 348
BstYI	RGATCY	2 cut(s)	134, 348
Bsu36I	CCTNAGG	1 cut(s)	317
BsuRI	GGCC	2 cut(s)	432, 450
BtsCI	GGATG	3 cut(s)	34, 73, 451
Cac8I	GCNNGC	2 cut(s)	122, 280
Cfr13I	GGNCC	2 cut(s)	230, 431
Csp6I	GTAC	3 cut(s)	307, 327, 392
CviAII	CATG	2 cut(s)	154, 265
CviJI	RGCY	6 cut(s)	74, 190, 278, 282, 432, 450
CviKI_1	RGCY	6 cut(s)	74, 190, 278, 282, 432, 450
CviQI	GTAC	3 cut(s)	307, 327, 392
DdeI	CTNAG	1 cut(s)	317
DpnI	GATC	4 cut(s)	136, 212, 350, 443
DpnII	GATC	4 cut(s)	134, 210, 348, 441
EaeI	YGGCCR	1 cut(s)	448
Eco130I	CCWWGG	1 cut(s)	183
Eco31I	GGTCTC	1 cut(s)	254
Eco47I	GGWCC	1 cut(s)	230
Eco81I	CCTNAGG	1 cut(s)	317
EcoT14I	CCWWGG	1 cut(s)	183
EcoT22I	ATGCAT	1 cut(s)	465
ErhI	CCWWGG	1 cut(s)	183
FaeI	CATG	2 cut(s)	157, 268
FaiI	YATR	5 cut(s)	155, 170, 201, 266, 390
FaqI	GGGAC	1 cut(s)	175
FatI	CATG	2 cut(s)	153, 264
Fnu4HI	GCNGC	1 cut(s)	378
FokI	GGATG	3 cut(s)	41, 80, 438
Fsp4HI	GCNGC	1 cut(s)	378
FspBI	CTAG	1 cut(s)	384
GluI	GCNGC	1 cut(s)	378
GsuI	CTGGAG	1 cut(s)	278
HaeIII	GGCC	2 cut(s)	432, 450
HapII	CCGG	1 cut(s)	358
Hin1II	CATG	2 cut(s)	157, 268
HinfI	GANTC	1 cut(s)	253
HpaII	CCGG	1 cut(s)	358
HphI	GGTGA	1 cut(s)	289
Hpy166II	GTNNAC	1 cut(s)	327
Hpy188I	TCNGA	1 cut(s)	468
Hpy188III	TCNNGA	3 cut(s)	132, 257, 346
Hpy8I	GTNNAC	1 cut(s)	327
Hpy99I	CGWCG	1 cut(s)	431
HpyAV	CCTTC	3 cut(s)	42, 58, 135
HpyCH4III	ACNGT	1 cut(s)	365
HpyCH4V	TGCA	3 cut(s)	120, 458, 463
HpyF10VI	GCNNNNNNNGC	1 cut(s)	279
HpyF3I	CTNAG	1 cut(s)	317
Hsp92II	CATG	2 cut(s)	157, 268
Kzo9I	GATC	4 cut(s)	134, 210, 348, 441
LmnI	GCTCC	2 cut(s)	33, 187
Lsp1109I	GCAGC	1 cut(s)	364
LweI	GCATC	1 cut(s)	472
MaeI	CTAG	1 cut(s)	384
MalI	GATC	4 cut(s)	136, 212, 350, 443
MboI	GATC	4 cut(s)	134, 210, 348, 441
MboII	GAAGA	8 cut(s)	64, 67, 70, 73, 120, 423, 426, 434
MflI	RGATCY	2 cut(s)	134, 348
MlsI	TGGCCA	1 cut(s)	450
MluCI	AATT	1 cut(s)	206
MluNI	TGGCCA	1 cut(s)	450
MmeI	TCCRAC	1 cut(s)	74
MnlI	CCTC	5 cut(s)	64, 73, 301, 312, 382
Mox20I	TGGCCA	1 cut(s)	450
Mph1103I	ATGCAT	1 cut(s)	465
MscI	TGGCCA	1 cut(s)	450
MseI	TTAA	3 cut(s)	11, 99, 240
Msp20I	TGGCCA	1 cut(s)	450
MspA1I	CMGCKG	1 cut(s)	377
MspI	CCGG	1 cut(s)	358
MspR9I	CCNGG	1 cut(s)	358
MwoI	GCNNNNNNNGC	1 cut(s)	279
NciI	CCSGG	1 cut(s)	358
NdeII	GATC	4 cut(s)	134, 210, 348, 441
NlaIII	CATG	2 cut(s)	157, 268
NlaIV	GGNNCC	2 cut(s)	181, 189
NsiI	ATGCAT	1 cut(s)	465
PfeI	GAWTC	1 cut(s)	253
PkrI	GCNGC	1 cut(s)	379
PspN4I	GGNNCC	2 cut(s)	181, 189
PspPI	GGNCC	2 cut(s)	230, 431
PsuI	RGATCY	2 cut(s)	134, 348
RsaI	GTAC	3 cut(s)	308, 328, 393
RsaNI	GTAC	3 cut(s)	307, 327, 392
SaqAI	TTAA	3 cut(s)	11, 99, 240
SatI	GCNGC	1 cut(s)	378
Sau3AI	GATC	4 cut(s)	134, 210, 348, 441
Sau96I	GGNCC	2 cut(s)	230, 431
ScrFI	CCNGG	1 cut(s)	358
SetI	ASST	4 cut(s)	18, 302, 374, 389
SfaNI	GCATC	1 cut(s)	472
SinI	GGWCC	1 cut(s)	230
Sse9I	AATT	1 cut(s)	206
SsiI	CCGC	2 cut(s)	288, 375
SspMI	CTAG	1 cut(s)	384
StyD4I	CCNGG	1 cut(s)	356
StyI	CCWWGG	1 cut(s)	183
TaaI	ACNGT	1 cut(s)	365
TaqII	GACCGA	1 cut(s)	247
TasI	AATT	1 cut(s)	206
TatI	WGTACW	1 cut(s)	326
TfiI	GAWTC	1 cut(s)	253
Tru1I	TTAA	3 cut(s)	11, 99, 240
Tru9I	TTAA	3 cut(s)	11, 99, 240
TseI	GCWGC	1 cut(s)	377
VpaK11BI	GGWCC	1 cut(s)	230
XspI	CTAG	1 cut(s)	384
Zsp2I	ATGCAT	1 cut(s)	465

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.