RLG00000029038

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
OG0016916
Physical Location & Seq
Reverse (-)
31790734 .. 31793840
3107 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000029038

Sequence Viewer

Length: 672 bp
ATGGCAGCTAAAGAAAAGCTTTCATTTTATGTGCTGTGTTTCTCCTGCGAGACGGCCCAAATAGTCGGTGGCATTGAGAGGAATTCAGATTACGAGGATCTTTCCATAAAATTTTCTAGAGCCAACTTTGATTGGATTGGAAAGAGCTTGGCTGAACATCGATCCCACCACCTGCAACCCTTCCTTAACAATCTCCTTCCCACTCTTCCTAGAATCCACTATAGCAATCCAAGCATCCACAACATACATAAACGCCACAATTGTGAGGTGGAGGAAGGGGCGATGGCAGAGACGGAGGTGGCAGGAGAGGGGGAGTCGGGCGAGGGGGATCAGAAGGAGGGGTTGGCAGAGAGGTCGAGGCGGGAGAGGAAGGACTTGAGGGAAGGGTTGCGGTCAATGAAGGCGGTAAGGAGGTGGGTGCAGTTCTTGACGACGGTGCGGAAGGAGAAGATGAGGAGGGAGAGGAAGAGGAAGGTGAGGAGGAGGCCGAGGCTTGGCGGAGGAGTTGAGACGTGCTCCGTAGGTGGTGGAGCCGCGGGTGGTGCTGGTGGTGGTGTTGAACTGTTGATCGCTCATGGCGCCTTTCCTATCTTTAGAAACGTTTTTTTTTTTTTATTGGGTTTTTTGGTTTGGTTTTTTTGTTTTGGGACTTTTGATGTGTGTATTGTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

224

Amino Acids

25.25

Weight (kDa)

9.36

Isoelectric Point (pI)

62.99

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 180
Acc36I ACCTGC 1 cut(s) 180
AccB1I GGYRCC 1 cut(s) 578
AccII CGCG 1 cut(s) 536
AciI CCGC 7 cut(s) 361, 391, 404, 439, 498, 534, 536
AclI AACGTT 1 cut(s) 600
AclWI GGATC 3 cut(s) 105, 156, 336
AcsI RAATTY 2 cut(s) 82, 110
AcyI GRCGYC 1 cut(s) 579
AfiI CCNNNNNNNGG 1 cut(s) 494
AgsI TTSAA 1 cut(s) 560
AjiI CACGTC 1 cut(s) 513
AjuI GAANNNNNNNTTGG 2 cut(s) 326, 358
AleI CACNNNNGTG 1 cut(s) 261
AluBI AGCT 3 cut(s) 8, 19, 147
AluI AGCT 3 cut(s) 8, 19, 147
Alw21I GWGCWC 1 cut(s) 518
Alw26I GTCTC 3 cut(s) 44, 284, 503
AlwI GGATC 3 cut(s) 105, 156, 336
AoxI GGCC 2 cut(s) 54, 485
ApeKI GCWGC 1 cut(s) 5
ApoI RAATTY 2 cut(s) 82, 110
AspLEI GCGC 1 cut(s) 581
AspS9I GGNCC 1 cut(s) 55
AsuHPI GGTGA 1 cut(s) 487
BanI GGYRCC 1 cut(s) 578
Bbv12I GWGCWC 1 cut(s) 518
BbvI GCAGC 1 cut(s) 17
BccI CCATC 1 cut(s) 277
BceAI ACGGC 1 cut(s) 69
BcgI CGANNNNNNTGC 2 cut(s) 336, 370
BcoDI GTCTC 3 cut(s) 44, 284, 503
BfaI CTAG 2 cut(s) 117, 210
BfmI CTRYAG 1 cut(s) 220
BfoI RGCGCY 1 cut(s) 582
BfuAI ACCTGC 1 cut(s) 180
BisI GCNGC 2 cut(s) 6, 534
BlsI GCNGC 2 cut(s) 7, 535
BmgBI CACGTC 1 cut(s) 513
BmgT120I GGNCC 1 cut(s) 55
BmiI GGNNCC 2 cut(s) 532, 580
BmsI GCATC 1 cut(s) 243
BplI GAGNNNNNCTC 2 cut(s) 500, 532
BpuEI CTTGAG 1 cut(s) 397
Bsa29I ATCGAT 1 cut(s) 160
BsaHI GRCGYC 1 cut(s) 579
BsaJI CCNNGG 2 cut(s) 488, 534
Bsc4I CCNNNNNNNGG 1 cut(s) 494
BseCI ATCGAT 1 cut(s) 160
BseDI CCNNGG 2 cut(s) 488, 534
BseGI GGATG 1 cut(s) 234
BseLI CCNNNNNNNGG 1 cut(s) 494
BseRI GAGGAG 4 cut(s) 469, 493, 496, 516
BseXI GCAGC 1 cut(s) 17
BsgI GTGCAG 1 cut(s) 440
Bsh1236I CGCG 1 cut(s) 536
BshFI GGCC 2 cut(s) 56, 487
BshNI GGYRCC 1 cut(s) 578
BshVI ATCGAT 1 cut(s) 160
BsiHKAI GWGCWC 1 cut(s) 518
BslFI GGGAC 1 cut(s) 661
BslI CCNNNNNNNGG 1 cut(s) 494
BsmAI GTCTC 3 cut(s) 44, 284, 503
BsmBI CGTCTC 3 cut(s) 44, 284, 503
BsmFI GGGAC 1 cut(s) 661
BsnI GGCC 2 cut(s) 56, 487
Bsp1286I GDGCHC 1 cut(s) 518
Bsp143I GATC 4 cut(s) 97, 161, 328, 567
BspACI CCGC 7 cut(s) 361, 391, 404, 439, 498, 534, 536
BspANI GGCC 2 cut(s) 56, 487
BspDI ATCGAT 1 cut(s) 160
BspFNI CGCG 1 cut(s) 536
BspLI GGNNCC 2 cut(s) 532, 580
BspMI ACCTGC 1 cut(s) 180
BspPI GGATC 3 cut(s) 105, 156, 336
BspT107I GGYRCC 1 cut(s) 578
BssECI CCNNGG 2 cut(s) 488, 534
BssMI GATC 4 cut(s) 97, 161, 328, 567
BssNI GRCGYC 1 cut(s) 579
Bst4CI ACNGT 2 cut(s) 436, 564
Bst6I CTCTTC 2 cut(s) 210, 461
BstACI GRCGYC 1 cut(s) 579
BstDSI CCRYGG 1 cut(s) 534
BstF5I GGATG 1 cut(s) 234
BstFNI CGCG 1 cut(s) 536
BstH2I RGCGCY 1 cut(s) 582
BstHHI GCGC 1 cut(s) 581
BstKTI GATC 4 cut(s) 100, 164, 331, 570
BstMAI GTCTC 3 cut(s) 44, 284, 503
BstMBI GATC 4 cut(s) 97, 161, 328, 567
BstMWI GCNNNNNNNGC 3 cut(s) 231, 542, 578
BstSFI CTRYAG 1 cut(s) 220
BstUI CGCG 1 cut(s) 536
BstV1I GCAGC 1 cut(s) 17
BstX2I RGATCY 1 cut(s) 97
BstYI RGATCY 1 cut(s) 97
Bsu15I ATCGAT 1 cut(s) 160
BsuRI GGCC 2 cut(s) 56, 487
BsuTUI ATCGAT 1 cut(s) 160
BtgI CCRYGG 1 cut(s) 534
BtgZI GCGATG 1 cut(s) 296
BtrI CACGTC 1 cut(s) 513
BtsCI GGATG 1 cut(s) 234
BveI ACCTGC 1 cut(s) 180
CfoI GCGC 1 cut(s) 581
Cfr13I GGNCC 1 cut(s) 55
Cfr42I CCGCGG 1 cut(s) 537
ClaI ATCGAT 1 cut(s) 160
CviAII CATG 1 cut(s) 575
CviJI RGCY 9 cut(s) 8, 19, 56, 122, 147, 152, 487, 493, 533
CviKI_1 RGCY 9 cut(s) 8, 19, 56, 122, 147, 152, 487, 493, 533
DinI GGCGCC 1 cut(s) 580
DpnI GATC 4 cut(s) 99, 163, 330, 569
DpnII GATC 4 cut(s) 97, 161, 328, 567
Eam1104I CTCTTC 2 cut(s) 210, 461
EarI CTCTTC 2 cut(s) 210, 461
EciI GGCGGA 1 cut(s) 513
EcoRI GAATTC 1 cut(s) 82
EgeI GGCGCC 1 cut(s) 580
EheI GGCGCC 1 cut(s) 580
Esp3I CGTCTC 3 cut(s) 44, 284, 503
FaeI CATG 1 cut(s) 578
FaiI YATR 6 cut(s) 30, 107, 222, 245, 249, 576
FalI AAGNNNNNCTT 1 cut(s) 35
FaqI GGGAC 1 cut(s) 661
FatI CATG 1 cut(s) 574
FauI CCCGC 2 cut(s) 354, 529
Fnu4HI GCNGC 2 cut(s) 6, 534
FokI GGATG 1 cut(s) 221
Fsp4HI GCNGC 2 cut(s) 6, 534
FspBI CTAG 2 cut(s) 117, 210
GlaI GCGC 1 cut(s) 580
GluI GCNGC 2 cut(s) 6, 534
HaeII RGCGCY 1 cut(s) 582
HaeIII GGCC 2 cut(s) 56, 487
HhaI GCGC 1 cut(s) 581
Hin1I GRCGYC 1 cut(s) 579
Hin1II CATG 1 cut(s) 578
Hin6I GCGC 1 cut(s) 579
HinP1I GCGC 1 cut(s) 579
HindIII AAGCTT 1 cut(s) 17
HinfI GANTC 2 cut(s) 213, 314
HphI GGTGA 1 cut(s) 487
Hpy188I TCNGA 2 cut(s) 88, 333
Hpy188III TCNNGA 2 cut(s) 117, 427
Hpy99I CGWCG 1 cut(s) 436
HpyAV CCTTC 9 cut(s) 190, 206, 269, 328, 364, 377, 394, 436, 466
HpyCH4III ACNGT 2 cut(s) 436, 564
HpyCH4IV ACGT 2 cut(s) 512, 600
HpyCH4V TGCA 2 cut(s) 175, 421
HpyF10VI GCNNNNNNNGC 3 cut(s) 231, 542, 578
HpySE526I ACGT 2 cut(s) 512, 600
Hsp92I GRCGYC 1 cut(s) 579
Hsp92II CATG 1 cut(s) 578
HspAI GCGC 1 cut(s) 579
KasI GGCGCC 1 cut(s) 578
KspI CCGCGG 1 cut(s) 537
Kzo9I GATC 4 cut(s) 97, 161, 328, 567
LmnI GCTCC 2 cut(s) 521, 530
LpnPI CCDG 4 cut(s) 58, 185, 288, 531
Lsp1109I GCAGC 1 cut(s) 17
LweI GCATC 1 cut(s) 243
MaeI CTAG 2 cut(s) 117, 210
MaeII ACGT 2 cut(s) 512, 600
MalI GATC 4 cut(s) 99, 163, 330, 569
MboI GATC 4 cut(s) 97, 161, 328, 567
MboII GAAGA 3 cut(s) 197, 460, 478
MfeI CAATTG 1 cut(s) 259
MflI RGATCY 1 cut(s) 97
MhlI GDGCHC 1 cut(s) 518
MluCI AATT 3 cut(s) 82, 110, 259
Mly113I GGCGCC 1 cut(s) 579
MlyI GAGTC 1 cut(s) 323
MseI TTAA 1 cut(s) 186
MslI CAYNNNNRTG 1 cut(s) 261
MspA1I CMGCKG 1 cut(s) 536
MunI CAATTG 1 cut(s) 259
MvnI CGCG 1 cut(s) 536
MwoI GCNNNNNNNGC 3 cut(s) 231, 542, 578
NarI GGCGCC 1 cut(s) 579
NdeII GATC 4 cut(s) 97, 161, 328, 567
NlaIII CATG 1 cut(s) 578
NlaIV GGNNCC 2 cut(s) 532, 580
NmeAIII GCCGAG 1 cut(s) 513
OliI CACNNNNGTG 1 cut(s) 261
PaqCI CACCTGC 1 cut(s) 180
PfeI GAWTC 1 cut(s) 213
PkrI GCNGC 2 cut(s) 7, 535
PleI GAGTC 1 cut(s) 322
PluTI GGCGCC 1 cut(s) 582
PpsI GAGTC 1 cut(s) 322
Psp1406I AACGTT 1 cut(s) 600
PspN4I GGNNCC 2 cut(s) 532, 580
PspPI GGNCC 1 cut(s) 55
PsuI RGATCY 1 cut(s) 97
RseI CAYNNNNRTG 1 cut(s) 261
SacII CCGCGG 1 cut(s) 537
SaqAI TTAA 1 cut(s) 186
SatI GCNGC 2 cut(s) 6, 534
Sau3AI GATC 4 cut(s) 97, 161, 328, 567
Sau96I GGNCC 1 cut(s) 55
SchI GAGTC 1 cut(s) 323
SduI GDGCHC 1 cut(s) 518
SfaNI GCATC 1 cut(s) 243
SfcI CTRYAG 1 cut(s) 220
SfoI GGCGCC 1 cut(s) 580
Sfr303I CCGCGG 1 cut(s) 537
SgrBI CCGCGG 1 cut(s) 537
SmiMI CAYNNNNRTG 1 cut(s) 261
SmlI CTYRAG 1 cut(s) 376
SmoI CTYRAG 1 cut(s) 376
Sse9I AATT 3 cut(s) 82, 110, 259
SsiI CCGC 7 cut(s) 361, 391, 404, 439, 498, 534, 536
SspDI GGCGCC 1 cut(s) 578
SspMI CTAG 2 cut(s) 117, 210
TaaI ACNGT 2 cut(s) 436, 564
TaiI ACGT 2 cut(s) 515, 603
TaqI TCGA 2 cut(s) 160, 356
TasI AATT 3 cut(s) 82, 110, 259
TauI GCSGC 1 cut(s) 536
TfiI GAWTC 1 cut(s) 213
Tru1I TTAA 1 cut(s) 186
Tru9I TTAA 1 cut(s) 186
TseI GCWGC 1 cut(s) 5
TspDTI ATGAA 2 cut(s) 12, 413
TspGWI ACGGA 2 cut(s) 308, 508
XapI RAATTY 2 cut(s) 82, 110
XbaI TCTAGA 1 cut(s) 116
XcmI CCANNNNNNNNNTGG 1 cut(s) 65
XspI CTAG 2 cut(s) 117, 210
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.