Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0009089

Physical Location & Seq

Genomic Coordinates Forward (+)

68718253 .. 68725743

Gene Structure 7491 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ28055

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2676 bp

ATGATGAATACTATTCTCAATATCAGAGCCTCTCTCTCGCCGGACCCGAAGCTCTTGTTCAGCTACACCACCAACTCCAATGTCGACCGCTTCGCCTTCAACTTCAAGCCTCACCTCCCGATACGCCGTCGTTTCCCTCATCGCCGTCATCTCCGGCAGCAGTCTAACCCTAATTTCACTCTCTCCAGCTGCCTGCAGGCCGCCGCGGCCCCAAATCATATCGCCACGGCGGCGGCGCCGATTCAGGAGGAGGCGTCGGTGCTGCTCGACGTCTCCGGGATGATGTGCGGCGGCTGCGTGTCGCGAGTCAAGTCGGTGCTGTCTGCGGACGACCGAGTCCACTCCGTGGCGGTCAACATGTTGACCGAGACGGCGGCGATTAAGCTGAGGCCGGAGGTTGAAGGTGGAGCGCAGGCCGTGGCGGAGAGCTTGGCCGGAAGGTTGACGGAGTGCGGATTTGCGGCGAGGAGGAGGGCTTCCGGGGTGGGAGTGACGGAGAGTGTGAGGAAGTGGAAGGAGATGGCGAAGAAGAAGGAGGAGATGCTGGTGAAGAGTAGGAACCGAGTCATTTTGGCTTGGACTCTGGTGGCCTTGTGCTGTGGATCACACGCTTCCCACATTTTGCATTCTCTGGGAATTCACATTGCTCATGGATCGTATATGGATGTGCTCCATAATTCGTATGTGAAGGGTGGTTTGGCCATGGCAGCTTTGTTGGGACCCGGACGAGACTTGCTTTTTGATGGTTTGAGGGCTTTCAAAAAAGGATCACCCAATATGAATTCTCTCGTGGGATTTGGATCCCTGGCTGCTTTTACAATTAGTGCGGTCTCTCTTCTTAACCCTGAACTTCAATGGGATGCAGCCTTCTTTGATGAGCCGGTCATGCTTCTTGGTTTTGTGCTCCTAGGACGTTCTCTTGAAGAAAGGGCAAGGATCAGGGCATCTAGTGATATGAACGAACTCTTGTCACTGATAAACACTCAATCAAGACTTATAATTGCATCCTCAGAAAATGATTCCTCCAGTGACACTGTACTTGGCTCCGATGCAATTTGCATTGAGGTCCCAACTGATGATGTTCGTGTGGGAGATTCTGTTTTGGTATTGCCAGGAGAAACTATACCCGTGGATGGAAGAGTTCTGGCTGGAAGAAGTGTTGTGGATGAGTCCATGCTCACAGGAGAATCGCTTCCTGTATTTAAGGAAAAAGAACTTACCGTCTCAGCTGGAACAATAAATTGGGATGGTCCTCTGAGAATTGAAGCAACTTCAACTGGCTCCAATTCAATGATTTCCAAGATTGTTCGCATGGTTGAGGATGCTCAAGGCCATGAAGCACCAATTCAAAGGCTTGCTGATTCAATAGCTGGACCTTTTGTATACACTATAATGACTCTCTCAGCTACAACATTTGCTTTTTGGTACTACATTGGAACTCATATTTTTCCTGATGTTTTGCTCAATGATATTGCTGGGCCAGATGGAGATTCATTGCTGTTGAGCTTGAAACTAGCTGTGGATGTCTTGGTAGTTTCTTGCCCTTGTGCACTGGGTCTTGCAACACCCACAGCAATCCTAGTTGGCACTTCTCTTGGAGCAAGGCAAGGACTCCTTGTGAGAGGAGCAGATGTATTGGAACGCTTGGCCAGTATAGATCATATTGCTTTAGACAAGACAGGAACCCTCACTGAAGGAAAACCTGCTGTTTCTAGCATTGCTTCTTTCAAGTATAAAGACTCGGAAATTCTTCAAATAGCTGCTGCTGTAGAGAGTACAGCATCACATCCAATTGCTGATGCTATCTTAAACAAAGCCAAATCATTGGAGTTGAGTATCCCAGTCACAAAAAGGCAATTAACCGAACCGGGTTTTGGAACATTAGCAGAAGTAGATGGCCTTTTAGTTGCAGTGGGTTCTTTGGAATGGGTTCATGAGCGTTTCCAGAGAAGAACAGATCGATCTGACATTTCAAAACTAGAGCATGCTGTGCACCAATCATCAGAAGGCATAACACCCTCAAATTATTCAAAAACAATTGTATATGTTGGACGTGAAGGGGAAGGTATCATCGGTGCTATTGCAATATCCGACAGCCTGCGGGAAGATGCTGAGTTTACTGTAACTAGACTCCAGCAGAAGGGTATCAGAACTGTCCTGTTTTCTGGGGACAGGGAAGAGGCAGTTGCAACTATAGCAAAATCAGTTGGAATAGAAAAGGAATTTATCAAGTCATCATTGACTCCACAGGGAAAATCTGGAGCCATTTCTAGTCTTAAAGCTGCAGGGCATCATGTTGCAATGGTTGGTGATGGCATAAATGATGCACCTTCTTTGGCTCTTGCCGACGTTGGGATTGCTCTTCAGATTGAGGGACAAGAAAATGCTGCTTCAAATGCTGCGTCGATTATACTACTTGGAAACAAATTATCACAAGTTGTAGATGCACTGGAACTTGCACAGGCAACAATGGGAAAAGTGTATCAAAATTTATCTTGGGCTGTTGCGTACAACGTAATTGCCATCCCCATTGCTGCTGGAGTACTGCTTCCTCAATACGATTTTGCCATGACACCCTCACTTTCTGGTGGGATGATGGCCTTGAGCTCGATATTTGTAGTAACCAACTCTTTGCTTCTACAGCTTCATAAGTCTGAAAGTGCTAGGAAGAATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000041 GO:0003674 GO:0005215 GO:0005375 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006810 GO:0006811 GO:0006812 GO:0006825 GO:0008150 GO:0008324 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0015075 GO:0015318 GO:0016020 GO:0022857 GO:0022890 GO:0030001 GO:0031976 GO:0031984 GO:0034220 GO:0034357 GO:0035434 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0046873 GO:0046915 GO:0051179 GO:0051234 GO:0055035 GO:0055085 GO:0098655 GO:0098660 GO:0098662

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

E1-E2_ATPase HMA Hydrolase

Protein Analysis

891

Amino Acids

95.02

Weight (kDa)

6.06

Isoelectric Point (pI)

38.49

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HMA	PF00403	89 - 133	4.9e-09	Heavy-metal-associated domain
E1-E2_ATPase	PF00122	349 - 440	1.1e-27	P-type ATPase actuator domain
Hydrolase	PF00702	552 - 783	1.2e-24	haloacid dehalogenase-like hydrolase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0009089)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G21930 AT5G21930 AT5G21930 AT5G21930
fragaria_vesca	FvH4_2g30930 FvH4_2g30930 FvH4_2g30930
malus_domestica	MD15G1049400.v1.1
prunus_persica	Prupe.1G403700_v2.0.a1 Prupe.1G403700_v2.0.a1
pyrus_communis	pycom15g04820
rosa_chinensis	RchiOBHm_Chr6g0311921
rosa_multiflora	Rmu_ssc0000057.1_g000001
rosa_roxburghii	Rroxscaffold_7G00157220
rosa_rugosa	Rorug06G0391300 Rorug06G0391400 Rorug06G0391400
rosa_samantha	Rh6AG507800 Rh6BG519000 Rh6CG524700 Rh6DG510300
rosa_wichuraiana	Rw6G044200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	998
AasI	GACNNNNNNGTC	1 cut(s)	335
AatII	GACGTC	1 cut(s)	273
Acc36I	ACCTGC	1 cut(s)	1711
AccB1I	GGYRCC	1 cut(s)	235
AccB7I	CCANNNNNTGG	1 cut(s)	346
AccI	GTMKAC	2 cut(s)	84, 1383
AccII	CGCG	2 cut(s)	206, 304
AclWI	GGATC	6 cut(s)	610, 661, 775, 795, 808, 944
AcoI	YGGCCR	3 cut(s)	432, 699, 1647
AcsI	RAATTY	5 cut(s)	636, 781, 1746, 2222, 2488
AcuI	CTGAAG	2 cut(s)	1713, 2348
AcyI	GRCGYC	3 cut(s)	236, 254, 270
AdeI	CACNNNGTG	1 cut(s)	346
AfaI	GTAC	5 cut(s)	1038, 1427, 1777, 2510, 2544
AfiI	CCNNNNNNNGG	5 cut(s)	346, 1133, 1874, 2140, 2352
AflIII	ACRYGT	1 cut(s)	357
AjiI	CACGTC	1 cut(s)	2054
AjnI	CCWGG	2 cut(s)	804, 1111
AjuI	GAANNNNNNNTTGG	6 cut(s)	680, 712, 1225, 1257, 1857, 1889
Alw21I	GWGCWC	5 cut(s)	672, 906, 1552, 1995, 2609
Alw26I	GTCTC	5 cut(s)	277, 362, 723, 835, 1228
Alw44I	GTGCAC	2 cut(s)	1548, 1991
AlwI	GGATC	6 cut(s)	610, 661, 775, 795, 808, 944
ApaLI	GTGCAC	2 cut(s)	1548, 1991
ApoI	RAATTY	5 cut(s)	636, 781, 1746, 2222, 2488
ArsI	GACNNNNNNTTYG	4 cut(s)	722, 754, 2387, 2419
Asp700I	GAANNNNTTC	3 cut(s)	1191, 1749, 1929
AspA2I	CCTAGG	1 cut(s)	907
AspLEI	GCGC	2 cut(s)	238, 412
AspS9I	GGNCC	7 cut(s)	43, 208, 719, 1066, 1250, 1373, 1478
AsuC2I	CCSGG	4 cut(s)	277, 481, 723, 1869
AsuHPI	GGTGA	4 cut(s)	104, 559, 762, 2321
AvaII	GGWCC	5 cut(s)	43, 719, 1066, 1250, 1373
AvrII	CCTAGG	1 cut(s)	907
BaeGI	GKGCMC	2 cut(s)	1552, 1995
BalI	TGGCCA	2 cut(s)	701, 1649
BamHI	GGATCC	1 cut(s)	800
BanI	GGYRCC	1 cut(s)	235
BanII	GRGCYC	1 cut(s)	2609
BauI	CACGAG	1 cut(s)	788
Bbv12I	GWGCWC	5 cut(s)	672, 906, 1552, 1995, 2609
BbvCI	CCTCAGC	1 cut(s)	386
BccI	CCATC	9 cut(s)	514, 737, 1127, 1241, 1478, 1889, 2306, 2531, 2590
BceAI	ACGGC	5 cut(s)	111, 129, 243, 387, 401
BciT130I	CCWGG	2 cut(s)	806, 1113
BciVI	GTATCC	1 cut(s)	1847
BcnI	CCSGG	4 cut(s)	277, 481, 723, 1869
BcoDI	GTCTC	5 cut(s)	277, 362, 723, 835, 1228
BfaI	CTAG	9 cut(s)	908, 948, 1514, 1580, 1713, 1979, 2127, 2271, 2664
BfmI	CTRYAG	5 cut(s)	194, 1767, 2193, 2283, 2639
BfoI	RGCGCY	1 cut(s)	239
BfuAI	ACCTGC	1 cut(s)	1711
BfuI	GTATCC	1 cut(s)	1847
BglI	GCCNNNNNGGC	2 cut(s)	206, 230
BlnI	CCTAGG	1 cut(s)	907
BmcAI	AGTACT	1 cut(s)	2544
Bme1390I	CCNGG	6 cut(s)	277, 481, 723, 806, 1113, 1869
Bme18I	GGWCC	5 cut(s)	43, 719, 1066, 1250, 1373
BmgBI	CACGTC	1 cut(s)	2054
BmgT120I	GGNCC	7 cut(s)	43, 208, 719, 1066, 1250, 1373, 1478
BmrFI	CCNGG	6 cut(s)	277, 481, 723, 806, 1113, 1869
BmrI	ACTGGG	2 cut(s)	1562, 1835
BmuI	ACTGGG	2 cut(s)	1562, 1835
BplI	GAGNNNNNCTC	2 cut(s)	18, 50
BpmI	CTGGAG	5 cut(s)	169, 1009, 2117, 2280, 2559
Bpu10I	CCTNAGC	1 cut(s)	386
BpuEI	CTTGAG	2 cut(s)	1311, 2623
BpuMI	CCSGG	4 cut(s)	277, 481, 723, 1869
Bsa29I	ATCGAT	1 cut(s)	1960
BsaBI	GATNNNNATC	1 cut(s)	799
BsaHI	GRCGYC	3 cut(s)	236, 254, 270
BsaI	GGTCTC	1 cut(s)	835
BsaJI	CCNNGG	9 cut(s)	204, 225, 345, 417, 480, 702, 804, 907, 1128
BsaXI	ACNNNNNCTCC	6 cut(s)	239, 269, 1083, 1113, 1617, 1647
Bsc4I	CCNNNNNNNGG	5 cut(s)	346, 1133, 1874, 2140, 2352
Bse118I	RCCGGY	1 cut(s)	880
Bse1I	ACTGG	6 cut(s)	1026, 1282, 1557, 1650, 1841, 2454
Bse3DI	GCAATG	5 cut(s)	642, 1493, 1716, 2307, 2529
Bse8I	GATNNNNATC	1 cut(s)	799
BseBI	CCWGG	2 cut(s)	806, 1113
BseCI	ATCGAT	1 cut(s)	1960
BseDI	CCNNGG	9 cut(s)	204, 225, 345, 417, 480, 702, 804, 907, 1128
BseJI	GATNNNNATC	1 cut(s)	799
BseLI	CCNNNNNNNGG	5 cut(s)	346, 1133, 1874, 2140, 2352
BseMI	GCAATG	5 cut(s)	642, 1493, 1716, 2307, 2529
BseMII	CTCAG	6 cut(s)	377, 1023, 1239, 1247, 1416, 2103
BseNI	ACTGG	6 cut(s)	1026, 1282, 1557, 1650, 1841, 2454
BseRI	GAGGAG	5 cut(s)	263, 481, 484, 551, 1638
BseSI	GKGCMC	2 cut(s)	1552, 1995
BseYI	CCCAGC	1 cut(s)	1475
Bsh1236I	CGCG	2 cut(s)	206, 304
Bsh1285I	CGRYCG	2 cut(s)	88, 334
BshNI	GGYRCC	1 cut(s)	235
BshVI	ATCGAT	1 cut(s)	1960
BsiEI	CGRYCG	2 cut(s)	88, 334
BsiHKAI	GWGCWC	5 cut(s)	672, 906, 1552, 1995, 2609
BsiSI	CCGG	9 cut(s)	41, 154, 276, 392, 435, 480, 723, 881, 1868
BslFI	GGGAC	4 cut(s)	732, 1052, 2183, 2388
BslI	CCNNNNNNNGG	5 cut(s)	346, 1133, 1874, 2140, 2352
BsmAI	GTCTC	5 cut(s)	277, 362, 723, 835, 1228
BsmBI	CGTCTC	3 cut(s)	277, 362, 1228
BsmFI	GGGAC	4 cut(s)	732, 1052, 2183, 2388
BsmI	GAATGC	1 cut(s)	625
Bso31I	GGTCTC	1 cut(s)	835
Bsp1286I	GDGCHC	5 cut(s)	672, 906, 1552, 1995, 2609
Bsp143I	GATC	8 cut(s)	602, 653, 767, 800, 936, 1657, 1957, 1961
Bsp19I	CCATGG	1 cut(s)	702
Bsp68I	TCGCGA	1 cut(s)	304
BspCNI	CTCAG	6 cut(s)	378, 1022, 1238, 1248, 1415, 2104
BspDI	ATCGAT	1 cut(s)	1960
BspFNI	CGCG	2 cut(s)	206, 304
BspHI	TCATGA	1 cut(s)	1933
BspMAI	CTGCAG	2 cut(s)	198, 2287
BspMI	ACCTGC	1 cut(s)	1711
BspPI	GGATC	6 cut(s)	610, 661, 775, 795, 808, 944
BspQI	GCTCTTC	1 cut(s)	2367
BspT107I	GGYRCC	1 cut(s)	235
BspTNI	GGTCTC	1 cut(s)	835
BsrDI	GCAATG	5 cut(s)	642, 1493, 1716, 2307, 2529
BsrFI	RCCGGY	1 cut(s)	880
BsrI	ACTGG	6 cut(s)	1026, 1282, 1557, 1650, 1841, 2454
BssAI	RCCGGY	1 cut(s)	880
BssECI	CCNNGG	9 cut(s)	204, 225, 345, 417, 480, 702, 804, 907, 1128
BssMI	GATC	8 cut(s)	602, 653, 767, 800, 936, 1657, 1957, 1961
BssNAI	GTATAC	1 cut(s)	1384
BssNI	GRCGYC	3 cut(s)	236, 254, 270
BssSI	CACGAG	1 cut(s)	788
BssT1I	CCWWGG	2 cut(s)	702, 907
Bst1107I	GTATAC	1 cut(s)	1384
Bst2BI	CACGAG	1 cut(s)	788
Bst2UI	CCWGG	2 cut(s)	806, 1113
Bst4CI	ACNGT	4 cut(s)	1036, 1222, 2122, 2155
Bst6I	CTCTTC	5 cut(s)	545, 840, 1132, 2172, 2367
BstACI	GRCGYC	3 cut(s)	236, 254, 270
BstAPI	GCANNNNNTGC	1 cut(s)	1990
BstC8I	GCNNGC	6 cut(s)	194, 198, 414, 1356, 1986, 2099
BstDEI	CTNAG	6 cut(s)	386, 1009, 1225, 1256, 1402, 2112
BstDSI	CCRYGG	6 cut(s)	204, 225, 345, 417, 702, 1128
BstFNI	CGCG	2 cut(s)	206, 304
BstH2I	RGCGCY	1 cut(s)	239
BstHHI	GCGC	2 cut(s)	238, 412
BstKTI	GATC	8 cut(s)	605, 656, 770, 803, 939, 1660, 1960, 1964
BstMAI	GTCTC	5 cut(s)	277, 362, 723, 835, 1228
BstMBI	GATC	8 cut(s)	602, 653, 767, 800, 936, 1657, 1957, 1961
BstMCI	CGRYCG	2 cut(s)	88, 334
BstMWI	GCNNNNNNNGC	9 cut(s)	206, 230, 294, 707, 886, 1990, 2195, 2396, 2641
BstNI	CCWGG	2 cut(s)	806, 1113
BstNSI	RCATGY	2 cut(s)	361, 1988
BstSCI	CCNGG	6 cut(s)	275, 479, 721, 804, 1111, 1867
BstSFI	CTRYAG	5 cut(s)	194, 1767, 2193, 2283, 2639
BstSLI	GKGCMC	2 cut(s)	1552, 1995
BstUI	CGCG	2 cut(s)	206, 304
BstX2I	RGATCY	1 cut(s)	800
BstXI	CCANNNNNNTGG	1 cut(s)	1825
BstYI	RGATCY	1 cut(s)	800
BstZ17I	GTATAC	1 cut(s)	1384
Bsu15I	ATCGAT	1 cut(s)	1960
BsuI	GTATCC	1 cut(s)	1847
BsuTUI	ATCGAT	1 cut(s)	1960
BtgI	CCRYGG	6 cut(s)	204, 225, 345, 417, 702, 1128
BtgZI	GCGATG	1 cut(s)	125
BtrI	CACGTC	1 cut(s)	2054
BtsI	GCAGTG	1 cut(s)	1917
BtsIMutI	CAGTG	7 cut(s)	971, 1032, 1033, 1550, 1689, 1917, 2447
BtuMI	TCGCGA	1 cut(s)	304
BveI	ACCTGC	1 cut(s)	1711
Cac8I	GCNNGC	6 cut(s)	194, 198, 414, 1356, 1986, 2099
CciI	TCATGA	1 cut(s)	1933
CfoI	GCGC	2 cut(s)	238, 412
Cfr10I	RCCGGY	1 cut(s)	880
Cfr13I	GGNCC	7 cut(s)	43, 208, 719, 1066, 1250, 1373, 1478
Cfr42I	CCGCGG	1 cut(s)	207
ClaI	ATCGAT	1 cut(s)	1960
CseI	GACGC	2 cut(s)	243, 2391
Csp6I	GTAC	5 cut(s)	1037, 1426, 1776, 2509, 2543
CviQI	GTAC	5 cut(s)	1037, 1426, 1776, 2509, 2543
DdeI	CTNAG	6 cut(s)	386, 1009, 1225, 1256, 1402, 2112
DinI	GGCGCC	1 cut(s)	237
DpnI	GATC	8 cut(s)	604, 655, 769, 802, 938, 1659, 1959, 1963
DpnII	GATC	8 cut(s)	602, 653, 767, 800, 936, 1657, 1957, 1961
DraIII	CACNNNGTG	1 cut(s)	346
DrdI	GACNNNNNNGTC	1 cut(s)	335
DseDI	GACNNNNNNGTC	1 cut(s)	335
EaeI	YGGCCR	3 cut(s)	432, 699, 1647
Eam1104I	CTCTTC	5 cut(s)	545, 840, 1132, 2172, 2367
EarI	CTCTTC	5 cut(s)	545, 840, 1132, 2172, 2367
EciI	GGCGGA	1 cut(s)	437
Ecl136II	GAGCTC	1 cut(s)	2607
Eco130I	CCWWGG	2 cut(s)	702, 907
Eco24I	GRGCYC	1 cut(s)	2609
Eco31I	GGTCTC	1 cut(s)	835
Eco47I	GGWCC	5 cut(s)	43, 719, 1066, 1250, 1373
Eco53kI	GAGCTC	1 cut(s)	2607
Eco57I	CTGAAG	2 cut(s)	1713, 2348
EcoICRI	GAGCTC	1 cut(s)	2607
EcoO109I	RGGNCCY	2 cut(s)	719, 1066
EcoRI	GAATTC	2 cut(s)	636, 781
EcoRII	CCWGG	2 cut(s)	804, 1111
EcoT14I	CCWWGG	2 cut(s)	702, 907
EcoT38I	GRGCYC	1 cut(s)	2609
EgeI	GGCGCC	1 cut(s)	237
EheI	GGCGCC	1 cut(s)	237
ErhI	CCWWGG	2 cut(s)	702, 907
Esp3I	CGTCTC	3 cut(s)	277, 362, 1228
FalI	AAGNNNNNCTT	2 cut(s)	1599, 1631
FaqI	GGGAC	4 cut(s)	732, 1052, 2183, 2388
FauI	CCCGC	1 cut(s)	2094
FblI	GTMKAC	2 cut(s)	84, 1383
FriOI	GRGCYC	1 cut(s)	2609
FspBI	CTAG	9 cut(s)	908, 948, 1514, 1580, 1713, 1979, 2127, 2271, 2664
GlaI	GCGC	2 cut(s)	237, 411
GsaI	CCCAGC	1 cut(s)	1479
GsuI	CTGGAG	5 cut(s)	169, 1009, 2117, 2280, 2559
HaeII	RGCGCY	1 cut(s)	239
HapII	CCGG	9 cut(s)	41, 154, 276, 392, 435, 480, 723, 881, 1868
HgaI	GACGC	2 cut(s)	243, 2391
HhaI	GCGC	2 cut(s)	238, 412
Hin1I	GRCGYC	3 cut(s)	236, 254, 270
Hin6I	GCGC	2 cut(s)	236, 410
HinP1I	GCGC	2 cut(s)	236, 410
HincII	GTYRAC	4 cut(s)	85, 355, 363, 444
HindII	GTYRAC	4 cut(s)	85, 355, 363, 444
HpaII	CCGG	9 cut(s)	41, 154, 276, 392, 435, 480, 723, 881, 1868
HphI	GGTGA	4 cut(s)	104, 559, 762, 2321
Hpy166II	GTNNAC	9 cut(s)	85, 340, 355, 363, 444, 1384, 1550, 1993, 2118
Hpy188III	TCNNGA	9 cut(s)	118, 245, 303, 920, 990, 1451, 1934, 1945, 2259
Hpy8I	GTNNAC	9 cut(s)	85, 340, 355, 363, 444, 1384, 1550, 1993, 2118
Hpy99I	CGWCG	5 cut(s)	132, 259, 272, 2351, 2407
HpyCH4III	ACNGT	4 cut(s)	1036, 1222, 2122, 2155
HpyCH4IV	ACGT	5 cut(s)	270, 913, 2053, 2349, 2514
HpyF10VI	GCNNNNNNNGC	9 cut(s)	206, 230, 294, 707, 886, 1990, 2195, 2396, 2641
HpyF3I	CTNAG	6 cut(s)	386, 1009, 1225, 1256, 1402, 2112
HpySE526I	ACGT	5 cut(s)	270, 913, 2053, 2349, 2514
Hsp92I	GRCGYC	3 cut(s)	236, 254, 270
HspAI	GCGC	2 cut(s)	236, 410
KasI	GGCGCC	1 cut(s)	235
KflI	GGGWCCC	1 cut(s)	719
KspI	CCGCGG	1 cut(s)	207
Kzo9I	GATC	8 cut(s)	602, 653, 767, 800, 936, 1657, 1957, 1961
LguI	GCTCTTC	1 cut(s)	2367
LmnI	GCTCC	8 cut(s)	407, 675, 909, 1049, 1286, 1598, 1625, 2261
MaeI	CTAG	9 cut(s)	908, 948, 1514, 1580, 1713, 1979, 2127, 2271, 2664
MaeII	ACGT	5 cut(s)	270, 913, 2053, 2349, 2514
MaeIII	GTNAC	6 cut(s)	490, 969, 1028, 1843, 2122, 2620
MalI	GATC	8 cut(s)	604, 655, 769, 802, 938, 1659, 1959, 1963
MboI	GATC	8 cut(s)	602, 653, 767, 800, 936, 1657, 1957, 1961
MfeI	CAATTG	2 cut(s)	1791, 2037
MflI	RGATCY	1 cut(s)	800
MhlI	GDGCHC	5 cut(s)	672, 906, 1552, 1995, 2609
MlsI	TGGCCA	2 cut(s)	701, 1649
MluNI	TGGCCA	2 cut(s)	701, 1649
Mly113I	GGCGCC	1 cut(s)	236
MmeI	TCCRAC	3 cut(s)	2029, 2115, 2188
Mox20I	TGGCCA	2 cut(s)	701, 1649
MroXI	GAANNNNTTC	3 cut(s)	1191, 1749, 1929
MscI	TGGCCA	2 cut(s)	701, 1649
MseI	TTAA	6 cut(s)	381, 840, 1203, 1808, 1859, 2277
MslI	CAYNNNNRTG	1 cut(s)	1391
Msp20I	TGGCCA	2 cut(s)	701, 1649
MspA1I	CMGCKG	3 cut(s)	189, 206, 1229
MspI	CCGG	9 cut(s)	41, 154, 276, 392, 435, 480, 723, 881, 1868
MspR9I	CCNGG	6 cut(s)	277, 481, 723, 806, 1113, 1869
MunI	CAATTG	2 cut(s)	1791, 2037
Mva1269I	GAATGC	1 cut(s)	625
MvaI	CCWGG	2 cut(s)	806, 1113
MvnI	CGCG	2 cut(s)	206, 304
MwoI	GCNNNNNNNGC	9 cut(s)	206, 230, 294, 707, 886, 1990, 2195, 2396, 2641
NarI	GGCGCC	1 cut(s)	236
NciI	CCSGG	4 cut(s)	277, 481, 723, 1869
NcoI	CCATGG	1 cut(s)	702
NdeII	GATC	8 cut(s)	602, 653, 767, 800, 936, 1657, 1957, 1961
NmuCI	GTSAC	4 cut(s)	490, 969, 1028, 1843
NruI	TCGCGA	1 cut(s)	304
NspI	RCATGY	2 cut(s)	361, 1988
PaeI	GCATGC	1 cut(s)	1988
PagI	TCATGA	1 cut(s)	1933
PciI	ACATGT	1 cut(s)	357
PciSI	GCTCTTC	1 cut(s)	2367
PcsI	WCGNNNNNNNCGW	1 cut(s)	44
PctI	GAATGC	1 cut(s)	625
PdmI	GAANNNNTTC	3 cut(s)	1191, 1749, 1929
PfeI	GAWTC	6 cut(s)	241, 1019, 1094, 1187, 1361, 1490
PflFI	GACNNNGTC	1 cut(s)	335
PflMI	CCANNNNNTGG	1 cut(s)	346
PfoI	TCCNGGA	1 cut(s)	275
PluTI	GGCGCC	1 cut(s)	239
PpuMI	RGGWCCY	2 cut(s)	719, 1066
PscI	ACATGT	1 cut(s)	357
PsiI	TTATAA	1 cut(s)	998
Psp124BI	GAGCTC	1 cut(s)	2609
Psp5II	RGGWCCY	2 cut(s)	719, 1066
Psp6I	CCWGG	2 cut(s)	804, 1111
PspFI	CCCAGC	1 cut(s)	1475
PspGI	CCWGG	2 cut(s)	804, 1111
PspPI	GGNCC	7 cut(s)	43, 208, 719, 1066, 1250, 1373, 1478
PspPPI	RGGWCCY	2 cut(s)	719, 1066
PstI	CTGCAG	2 cut(s)	198, 2287
PsuI	RGATCY	1 cut(s)	800
PsyI	GACNNNGTC	1 cut(s)	335
PvuII	CAGCTG	2 cut(s)	189, 1229
RruI	TCGCGA	1 cut(s)	304
RsaI	GTAC	5 cut(s)	1038, 1427, 1777, 2510, 2544
RsaNI	GTAC	5 cut(s)	1037, 1426, 1776, 2509, 2543
RseI	CAYNNNNRTG	1 cut(s)	1391
SacI	GAGCTC	1 cut(s)	2609
SacII	CCGCGG	1 cut(s)	207
SalI	GTCGAC	1 cut(s)	83
SapI	GCTCTTC	1 cut(s)	2367
SaqAI	TTAA	6 cut(s)	381, 840, 1203, 1808, 1859, 2277
Sau3AI	GATC	8 cut(s)	602, 653, 767, 800, 936, 1657, 1957, 1961
Sau96I	GGNCC	7 cut(s)	43, 208, 719, 1066, 1250, 1373, 1478
SbfI	CCTGCAGG	1 cut(s)	198
ScaI	AGTACT	1 cut(s)	2544
ScrFI	CCNGG	6 cut(s)	277, 481, 723, 806, 1113, 1869
SdaI	CCTGCAGG	1 cut(s)	198
SduI	GDGCHC	5 cut(s)	672, 906, 1552, 1995, 2609
SfcI	CTRYAG	5 cut(s)	194, 1767, 2193, 2283, 2639
SfiI	GGCCNNNNNGGCC	1 cut(s)	206
SfoI	GGCGCC	1 cut(s)	237
Sfr303I	CCGCGG	1 cut(s)	207
SgrBI	CCGCGG	1 cut(s)	207
SinI	GGWCC	5 cut(s)	43, 719, 1066, 1250, 1373
SmiMI	CAYNNNNRTG	1 cut(s)	1391
SmlI	CTYRAG	2 cut(s)	1326, 2602
SmoI	CTYRAG	2 cut(s)	1326, 2602
SphI	GCATGC	1 cut(s)	1988
Sse8387I	CCTGCAGG	1 cut(s)	198
SspDI	GGCGCC	1 cut(s)	235
SspMI	CTAG	9 cut(s)	908, 948, 1514, 1580, 1713, 1979, 2127, 2271, 2664
SstI	GAGCTC	1 cut(s)	2609
StyD4I	CCNGG	6 cut(s)	275, 479, 721, 804, 1111, 1867
StyI	CCWWGG	2 cut(s)	702, 907
TaaI	ACNGT	4 cut(s)	1036, 1222, 2122, 2155
TaiI	ACGT	5 cut(s)	273, 916, 2056, 2352, 2517
TaqI	TCGA	5 cut(s)	84, 267, 1960, 2405, 2609
TaqII	GACCGA	2 cut(s)	348, 380
TatI	WGTACW	3 cut(s)	1036, 1775, 2542
TauI	GCSGC	9 cut(s)	203, 206, 209, 233, 236, 291, 294, 377, 464
TfiI	GAWTC	6 cut(s)	241, 1019, 1094, 1187, 1361, 1490
Tru1I	TTAA	6 cut(s)	381, 840, 1203, 1808, 1859, 2277
Tru9I	TTAA	6 cut(s)	381, 840, 1203, 1808, 1859, 2277
TscAI	CASTG	7 cut(s)	978, 1033, 1039, 1557, 1696, 1917, 2454
TseFI	GTSAC	4 cut(s)	490, 969, 1028, 1843
Tsp45I	GTSAC	4 cut(s)	490, 969, 1028, 1843
TspDTI	ATGAA	7 cut(s)	20, 794, 971, 1350, 1482, 1922, 2636
TspGWI	ACGGA	3 cut(s)	334, 461, 509
TspRI	CASTG	7 cut(s)	978, 1033, 1039, 1557, 1696, 1917, 2454
Tth111I	GACNNNGTC	1 cut(s)	335
Van91I	CCANNNNNTGG	1 cut(s)	346
VneI	GTGCAC	2 cut(s)	1548, 1991
VpaK11BI	GGWCC	5 cut(s)	43, 719, 1066, 1250, 1373
XapI	RAATTY	5 cut(s)	636, 781, 1746, 2222, 2488
XceI	RCATGY	2 cut(s)	361, 1988
XmaJI	CCTAGG	1 cut(s)	907
XmiI	GTMKAC	2 cut(s)	84, 1383
XmnI	GAANNNNTTC	3 cut(s)	1191, 1749, 1929
XspI	CTAG	9 cut(s)	908, 948, 1514, 1580, 1713, 1979, 2127, 2271, 2664
ZraI	GACGTC	1 cut(s)	271
ZrmI	AGTACT	1 cut(s)	2544

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.