Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0009089

Physical Location & Seq

Genomic Coordinates Reverse (-)

53585197 .. 53588606

Gene Structure 3410 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0391400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1032 bp

ATGGCTTTCGCTTCGGCGCTCAACGCTCCTAACGGCCTTCATCGTCTACCGTCTTCCCGCCACGAAATAACCCGAACCGGACCCGCCAGTCTGGTCCTGCCACGTCACCTTCCGGCCCGCTTCTCATCCACGCTCGCCTTCGCCCGCCGTAAAAACCACCGCGCCGCGGTGACGTCAGCTCAGCCGAAGTTAAAGAAGAAAAGCGCGGCGAAGAATGAGGAGGATGAAGTGGACGGCGATGCTATAGACGCTTTGTTTTCGCTGCTGGAGGAAGACCTCAGAAACGACGGCGTGTCGTTTGATGATGACGGCGAAGACGACGAGATAAGCGAAGAGGACCTGGCTAGGCTTGAAGAGGAACTGGCGGAGGCGTTTGGTGCGGTTGATGAGGATGAAGATGAAGAGGAGGATGACGAAGACGGGGACGGCGATGTTGATGTTGTTCAGAGCGATGCGACTGAAGAAGAAGAAGAAGAGGAGGAGGAGGACGACGATGAAGTTGAAGTTGCTGTGAAGCTTAAGACTTGGCAATTTCGGAGATTGGCTTCAGCTTTAAAAGTCGGTCGCCGCAAAACCAGTATAAAAGCCCTTGCAGCTGAGCTTTGTCTTGACAGGGCTCTTGTTCTTCAAATGCTTCGTGATCCGCCTCCAAATCTTTTGATGCTCAGTGCTGCTCTACCTGCTCCTAAAAAATCTGTGCCTGAACCAAAGCCTGTAGAAACTGTTGTGGAAACTCTTGTGGAACCTACTACAGATGCTGCAGCGGTCGAAACTGCGGTGAAGGTGCCGGTTCATGTCCGGCAACAAAAGTTTTCTGGTCAGAAGAGACTGAAGAAAGTGCATCTTGACACCCTTGAAAGAGTTTATAGAAGAACAAAGCGCCCAACAAATGCAATTGTCAGCAGCATAGTGCATGTGACAAACCTGCCGCGCAAAAGAATTGTGAAATGGTTTGAAGACAAACGTTCTGAAGAGGGGGTTCCTGACTCTCGGCACCCATATCAACCGTCTGCTCCTACTACTGTCAACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000041 GO:0003674 GO:0005215 GO:0005375 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006810 GO:0006811 GO:0006812 GO:0006825 GO:0008150 GO:0008324 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0015075 GO:0015318 GO:0016020 GO:0022857 GO:0022890 GO:0030001 GO:0031976 GO:0031984 GO:0034220 GO:0034357 GO:0035434 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0046873 GO:0046915 GO:0051179 GO:0051234 GO:0055035 GO:0055085 GO:0098655 GO:0098660 GO:0098662

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

E1-E2_ATPase HMA Hydrolase

Protein Analysis

343

Amino Acids

38.22

Weight (kDa)

4.86

Isoelectric Point (pI)

60.28

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009089)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G21930 AT5G21930 AT5G21930 AT5G21930
fragaria_vesca	FvH4_2g30930 FvH4_2g30930 FvH4_2g30930
malus_domestica	MD15G1049400.v1.1
prunus_persica	Prupe.1G403700_v2.0.a1 Prupe.1G403700_v2.0.a1
pyrus_communis	pycom15g04820
rosa_chinensis	RchiOBHm_Chr6g0311921
rosa_multiflora	Rmu_ssc0000057.1_g000001
rosa_roxburghii	Rroxscaffold_7G00157220
rosa_rugosa	Rorug06G0391300 Rorug06G0391400 Rorug06G0391400
rosa_samantha	Rh6AG507800 Rh6BG519000 Rh6CG524700 Rh6DG510300
rosa_wichuraiana	Rw6G044200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	87
AatII	GACGTC	1 cut(s)	176
Acc36I	ACCTGC	2 cut(s)	688, 933
AccB1I	GGYRCC	2 cut(s)	784, 993
AccI	GTMKAC	1 cut(s)	46
AccII	CGCG	4 cut(s)	162, 167, 206, 931
AclI	AACGTT	1 cut(s)	964
AclWI	GGATC	1 cut(s)	635
AcuI	CTGAAG	4 cut(s)	480, 531, 851, 990
AcyI	GRCGYC	1 cut(s)	173
AfiI	CCNNNNNNNGG	1 cut(s)	166
AflII	CTTAAG	1 cut(s)	518
AgsI	TTSAA	5 cut(s)	353, 503, 629, 857, 956
AhdI	GACNNNNNGTC	1 cut(s)	292
AjiI	CACGTC	1 cut(s)	104
AjnI	CCWGG	1 cut(s)	339
AluBI	AGCT	5 cut(s)	179, 517, 551, 596, 601
AluI	AGCT	5 cut(s)	179, 517, 551, 596, 601
Alw26I	GTCTC	1 cut(s)	820
AlwI	GGATC	1 cut(s)	635
AlwNI	CAGNNNCTG	1 cut(s)	758
AoxI	GGCC	2 cut(s)	34, 114
ApeKI	GCWGC	6 cut(s)	262, 593, 671, 758, 761, 903
AspLEI	GCGC	5 cut(s)	19, 164, 206, 882, 933
AspS9I	GGNCC	4 cut(s)	80, 94, 115, 337
AsuHPI	GGTGA	3 cut(s)	98, 181, 790
AvaII	GGWCC	3 cut(s)	80, 94, 337
BanI	GGYRCC	2 cut(s)	784, 993
BanII	GRGCYC	1 cut(s)	619
BbsI	GAAGAC	5 cut(s)	45, 279, 321, 423, 963
BbvI	GCAGC	6 cut(s)	249, 605, 658, 745, 773, 915
BceAI	ACGGC	6 cut(s)	49, 132, 250, 304, 325, 442
BciT130I	CCWGG	1 cut(s)	341
BcoDI	GTCTC	1 cut(s)	820
BfaI	CTAG	2 cut(s)	345, 1030
BfmI	CTRYAG	4 cut(s)	243, 714, 750, 759
BfoI	RGCGCY	2 cut(s)	20, 883
BfrI	CTTAAG	1 cut(s)	518
BfuAI	ACCTGC	2 cut(s)	688, 933
BlpI	GCTNAGC	2 cut(s)	180, 597
Bme1390I	CCNGG	1 cut(s)	341
Bme18I	GGWCC	3 cut(s)	80, 94, 337
BmeRI	GACNNNNNGTC	1 cut(s)	292
BmgBI	CACGTC	1 cut(s)	104
BmgT120I	GGNCC	4 cut(s)	80, 94, 115, 337
BmiI	GGNNCC	5 cut(s)	82, 744, 786, 981, 995
BmrFI	CCNGG	1 cut(s)	341
BmsI	GCATC	5 cut(s)	229, 442, 651, 745, 850
BpiI	GAAGAC	5 cut(s)	45, 279, 321, 423, 963
BpmI	CTGGAG	1 cut(s)	287
Bpu1102I	GCTNAGC	2 cut(s)	180, 597
BsaHI	GRCGYC	1 cut(s)	173
BsaJI	CCNNGG	1 cut(s)	165
BsaWI	WCCGGW	1 cut(s)	77
Bsc4I	CCNNNNNNNGG	1 cut(s)	166
Bse118I	RCCGGY	1 cut(s)	787
Bse1I	ACTGG	3 cut(s)	87, 366, 576
BseBI	CCWGG	1 cut(s)	341
BseDI	CCNNGG	1 cut(s)	165
BseGI	GGATG	4 cut(s)	125, 229, 397, 415
BseLI	CCNNNNNNNGG	1 cut(s)	166
BseMII	CTCAG	4 cut(s)	194, 292, 588, 679
BseNI	ACTGG	3 cut(s)	87, 366, 576
BseRI	GAGGAG	5 cut(s)	233, 419, 491, 494, 497
BseXI	GCAGC	6 cut(s)	249, 605, 658, 745, 773, 915
Bsh1236I	CGCG	4 cut(s)	162, 167, 206, 931
Bsh1285I	CGRYCG	2 cut(s)	565, 768
BshFI	GGCC	2 cut(s)	36, 116
BshNI	GGYRCC	2 cut(s)	784, 993
BsiEI	CGRYCG	2 cut(s)	565, 768
BsiSI	CCGG	4 cut(s)	78, 113, 788, 799
BslFI	GGGAC	1 cut(s)	437
BslI	CCNNNNNNNGG	1 cut(s)	166
BsmAI	GTCTC	1 cut(s)	820
BsmFI	GGGAC	1 cut(s)	437
BsnI	GGCC	2 cut(s)	36, 116
Bsp1286I	GDGCHC	1 cut(s)	619
Bsp143I	GATC	1 cut(s)	640
Bsp1720I	GCTNAGC	2 cut(s)	180, 597
BspANI	GGCC	2 cut(s)	36, 116
BspCNI	CTCAG	4 cut(s)	193, 291, 589, 678
BspFNI	CGCG	4 cut(s)	162, 167, 206, 931
BspLI	GGNNCC	5 cut(s)	82, 744, 786, 981, 995
BspMAI	CTGCAG	1 cut(s)	763
BspMI	ACCTGC	2 cut(s)	688, 933
BspPI	GGATC	1 cut(s)	635
BspT107I	GGYRCC	2 cut(s)	784, 993
BspTI	CTTAAG	1 cut(s)	518
BsrFI	RCCGGY	1 cut(s)	787
BsrI	ACTGG	3 cut(s)	87, 366, 576
BssAI	RCCGGY	1 cut(s)	787
BssECI	CCNNGG	1 cut(s)	165
BssMI	GATC	1 cut(s)	640
BssNI	GRCGYC	1 cut(s)	173
Bst2UI	CCWGG	1 cut(s)	341
Bst4CI	ACNGT	4 cut(s)	51, 724, 1008, 1024
Bst6I	CTCTTC	6 cut(s)	327, 348, 396, 468, 818, 966
BstACI	GRCGYC	1 cut(s)	173
BstAFI	CTTAAG	1 cut(s)	518
BstC8I	GCNNGC	3 cut(s)	118, 135, 145
BstDEI	CTNAG	4 cut(s)	180, 278, 597, 665
BstDSI	CCRYGG	1 cut(s)	165
BstF5I	GGATG	4 cut(s)	125, 229, 397, 415
BstFNI	CGCG	4 cut(s)	162, 167, 206, 931
BstH2I	RGCGCY	2 cut(s)	20, 883
BstHHI	GCGC	5 cut(s)	19, 164, 206, 882, 933
BstKTI	GATC	1 cut(s)	643
BstMAI	GTCTC	1 cut(s)	820
BstMBI	GATC	1 cut(s)	640
BstMCI	CGRYCG	2 cut(s)	565, 768
BstMWI	GCNNNNNNNGC	5 cut(s)	23, 248, 377, 593, 680
BstNI	CCWGG	1 cut(s)	341
BstNSI	RCATGY	1 cut(s)	917
BstSCI	CCNGG	1 cut(s)	339
BstSFI	CTRYAG	4 cut(s)	243, 714, 750, 759
BstUI	CGCG	4 cut(s)	162, 167, 206, 931
BstV1I	GCAGC	6 cut(s)	249, 605, 658, 745, 773, 915
BstV2I	GAAGAC	5 cut(s)	45, 279, 321, 423, 963
BsuRI	GGCC	2 cut(s)	36, 116
BtgI	CCRYGG	1 cut(s)	165
BtgZI	GCGATG	3 cut(s)	252, 444, 465
BtrI	CACGTC	1 cut(s)	104
BtsCI	GGATG	4 cut(s)	125, 229, 397, 415
BtsIMutI	CAGTG	1 cut(s)	673
BveI	ACCTGC	2 cut(s)	688, 933
Cac8I	GCNNGC	3 cut(s)	118, 135, 145
CaiI	CAGNNNCTG	1 cut(s)	758
CfoI	GCGC	5 cut(s)	19, 164, 206, 882, 933
Cfr10I	RCCGGY	1 cut(s)	787
Cfr13I	GGNCC	4 cut(s)	80, 94, 115, 337
Cfr42I	CCGCGG	1 cut(s)	168
CseI	GACGC	1 cut(s)	257
CviAII	CATG	2 cut(s)	794, 914
DdeI	CTNAG	4 cut(s)	180, 278, 597, 665
DpnI	GATC	1 cut(s)	642
DpnII	GATC	1 cut(s)	640
DraI	TTTAAA	1 cut(s)	555
DrdI	GACNNNNNNGTC	1 cut(s)	87
DriI	GACNNNNNGTC	1 cut(s)	292
DseDI	GACNNNNNNGTC	1 cut(s)	87
Eam1104I	CTCTTC	6 cut(s)	327, 348, 396, 468, 818, 966
Eam1105I	GACNNNNNGTC	1 cut(s)	292
EarI	CTCTTC	6 cut(s)	327, 348, 396, 468, 818, 966
EciI	GGCGGA	2 cut(s)	380, 633
Eco24I	GRGCYC	1 cut(s)	619
Eco47I	GGWCC	3 cut(s)	80, 94, 337
Eco57I	CTGAAG	4 cut(s)	480, 531, 851, 990
EcoO109I	RGGNCCY	1 cut(s)	337
EcoRII	CCWGG	1 cut(s)	339
EcoT38I	GRGCYC	1 cut(s)	619
FaeI	CATG	2 cut(s)	797, 917
FaiI	YATR	7 cut(s)	245, 581, 795, 867, 908, 915, 1000
FalI	AAGNNNNNCTT	2 cut(s)	828, 860
FaqI	GGGAC	1 cut(s)	437
FatI	CATG	2 cut(s)	793, 913
FauI	CCCGC	4 cut(s)	65, 91, 125, 152
FblI	GTMKAC	1 cut(s)	46
FokI	GGATG	4 cut(s)	112, 236, 404, 422
FriOI	GRGCYC	1 cut(s)	619
FspBI	CTAG	2 cut(s)	345, 1030
GlaI	GCGC	5 cut(s)	18, 163, 205, 881, 932
GsuI	CTGGAG	1 cut(s)	287
HaeII	RGCGCY	2 cut(s)	20, 883
HaeIII	GGCC	2 cut(s)	36, 116
HapII	CCGG	4 cut(s)	78, 113, 788, 799
HgaI	GACGC	1 cut(s)	257
HhaI	GCGC	5 cut(s)	19, 164, 206, 882, 933
Hin1I	GRCGYC	1 cut(s)	173
Hin1II	CATG	2 cut(s)	797, 917
Hin6I	GCGC	5 cut(s)	17, 162, 204, 880, 931
HinP1I	GCGC	5 cut(s)	17, 162, 204, 880, 931
HincII	GTYRAC	1 cut(s)	1027
HindII	GTYRAC	1 cut(s)	1027
HindIII	AAGCTT	1 cut(s)	515
HinfI	GANTC	1 cut(s)	986
HpaII	CCGG	4 cut(s)	78, 113, 788, 799
HphI	GGTGA	3 cut(s)	98, 181, 790
Hpy166II	GTNNAC	3 cut(s)	47, 232, 1027
Hpy188I	TCNGA	5 cut(s)	281, 447, 537, 822, 970
Hpy188III	TCNNGA	4 cut(s)	608, 638, 845, 983
Hpy8I	GTNNAC	3 cut(s)	47, 232, 1027
Hpy99I	CGWCG	3 cut(s)	290, 323, 494
HpyAV	CCTTC	4 cut(s)	47, 119, 148, 775
HpyCH4III	ACNGT	4 cut(s)	51, 724, 1008, 1024
HpyCH4IV	ACGT	3 cut(s)	103, 173, 964
HpyCH4V	TGCA	5 cut(s)	593, 761, 841, 893, 913
HpyF10VI	GCNNNNNNNGC	5 cut(s)	23, 248, 377, 593, 680
HpyF3I	CTNAG	4 cut(s)	180, 278, 597, 665
HpySE526I	ACGT	3 cut(s)	103, 173, 964
Hsp92I	GRCGYC	1 cut(s)	173
Hsp92II	CATG	2 cut(s)	797, 917
HspAI	GCGC	5 cut(s)	17, 162, 204, 880, 931
KspI	CCGCGG	1 cut(s)	168
Kzo9I	GATC	1 cut(s)	640
LmnI	GCTCC	3 cut(s)	31, 688, 1018
Lsp1109I	GCAGC	6 cut(s)	249, 605, 658, 745, 773, 915
LweI	GCATC	5 cut(s)	229, 442, 651, 745, 850
MaeI	CTAG	2 cut(s)	345, 1030
MaeII	ACGT	3 cut(s)	103, 173, 964
MaeIII	GTNAC	3 cut(s)	104, 169, 916
MalI	GATC	1 cut(s)	642
MboI	GATC	1 cut(s)	640
MfeI	CAATTG	1 cut(s)	894
MhlI	GDGCHC	1 cut(s)	619
MluCI	AATT	3 cut(s)	530, 894, 939
MlyI	GAGTC	1 cut(s)	980
MseI	TTAA	3 cut(s)	191, 519, 554
MspA1I	CMGCKG	3 cut(s)	167, 596, 764
MspCI	CTTAAG	1 cut(s)	518
MspI	CCGG	4 cut(s)	78, 113, 788, 799
MspR9I	CCNGG	1 cut(s)	341
MunI	CAATTG	1 cut(s)	894
MvaI	CCWGG	1 cut(s)	341
MvnI	CGCG	4 cut(s)	162, 167, 206, 931
MwoI	GCNNNNNNNGC	5 cut(s)	23, 248, 377, 593, 680
NdeII	GATC	1 cut(s)	640
NlaIII	CATG	2 cut(s)	797, 917
NlaIV	GGNNCC	5 cut(s)	82, 744, 786, 981, 995
NmeAIII	GCCGAG	1 cut(s)	970
NmuCI	GTSAC	3 cut(s)	104, 169, 916
NspI	RCATGY	1 cut(s)	917
PcsI	WCGNNNNNNNCGW	3 cut(s)	315, 327, 426
PleI	GAGTC	1 cut(s)	980
PpsI	GAGTC	1 cut(s)	980
PpuMI	RGGWCCY	1 cut(s)	337
Psp1406I	AACGTT	1 cut(s)	964
Psp5II	RGGWCCY	1 cut(s)	337
Psp6I	CCWGG	1 cut(s)	339
PspGI	CCWGG	1 cut(s)	339
PspN4I	GGNNCC	5 cut(s)	82, 744, 786, 981, 995
PspPI	GGNCC	4 cut(s)	80, 94, 115, 337
PspPPI	RGGWCCY	1 cut(s)	337
PstI	CTGCAG	1 cut(s)	763
PstNI	CAGNNNCTG	1 cut(s)	758
PvuII	CAGCTG	1 cut(s)	596
SacII	CCGCGG	1 cut(s)	168
SaqAI	TTAA	3 cut(s)	191, 519, 554
Sau3AI	GATC	1 cut(s)	640
Sau96I	GGNCC	4 cut(s)	80, 94, 115, 337
SchI	GAGTC	1 cut(s)	980
ScrFI	CCNGG	1 cut(s)	341
SduI	GDGCHC	1 cut(s)	619
SfaNI	GCATC	5 cut(s)	229, 442, 651, 745, 850
SfcI	CTRYAG	4 cut(s)	243, 714, 750, 759
Sfr303I	CCGCGG	1 cut(s)	168
SgrBI	CCGCGG	1 cut(s)	168
SinI	GGWCC	3 cut(s)	80, 94, 337
SmlI	CTYRAG	1 cut(s)	518
SmoI	CTYRAG	1 cut(s)	518
Sse9I	AATT	3 cut(s)	530, 894, 939
SspMI	CTAG	2 cut(s)	345, 1030
StyD4I	CCNGG	1 cut(s)	339
TaaI	ACNGT	4 cut(s)	51, 724, 1008, 1024
TaiI	ACGT	3 cut(s)	106, 176, 967
TaqI	TCGA	1 cut(s)	768
TaqII	GACCGA	1 cut(s)	551
TasI	AATT	3 cut(s)	530, 894, 939
TauI	GCSGC	4 cut(s)	167, 209, 570, 931
Tru1I	TTAA	3 cut(s)	191, 519, 554
Tru9I	TTAA	3 cut(s)	191, 519, 554
TscAI	CASTG	1 cut(s)	673
TseFI	GTSAC	3 cut(s)	104, 169, 916
TseI	GCWGC	6 cut(s)	262, 593, 671, 758, 761, 903
Tsp45I	GTSAC	3 cut(s)	104, 169, 916
TspDTI	ATGAA	6 cut(s)	29, 240, 408, 414, 510, 782
TspRI	CASTG	1 cut(s)	673
Vha464I	CTTAAG	1 cut(s)	518
VpaK11BI	GGWCC	3 cut(s)	80, 94, 337
XceI	RCATGY	1 cut(s)	917
XmiI	GTMKAC	1 cut(s)	46
XspI	CTAG	2 cut(s)	345, 1030
ZraI	GACGTC	1 cut(s)	174

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.