RchiOBHm_Chr7g0179631

Belongs to the glycosyl hydrolase 47 family

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
Physical Location & Seq
Reverse (-)
1869294 .. 1874026
4733 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ16013

Sequence Viewer

Length: 1707 bp
ATGTTGCCGCGCAAATCTGTGACATGGGTTCTGCTCTTCTTGTTCATCTTCTTCAACTTATCGACTTCCCAATCCGATCCTCGCTGGGCAGCTAAGAAGAGACGCCTCAGAAATAAAGTCCGTACCATGTTTTACCATGCATATGACAACTACATGATCCATGCGTTTCCGCATGATGAGCTAAAGCCTCTTAGTAAAAGCTTCACCGACTCTCTTAGTGAACTTGGAAATTTGAAGCTTGAACACCTACCACAAGACTATAATGGATCAGCTCTTACACTTATTGATTCATTGTCCAGCCTTGTCATTATGGGTAACAACACTGAATTTGAAAGTGCAGTTGTTTGGCTTTCTGAAAATTTGACTTTTGATGTTGATGCGAGGGTGAATCTTTTTGAGTGCAACATAAGAGTGCTTGGAGGACTTGTTTCTGCTCATCTGCTTGCGACTGATTCTACAGACAGGTTGGGTCAAGGAGTTTATAAGAACCAACTGCTAACCTTGGCCGAGGATTTAGGGAAGCGTTTTCTACCTGCATTCAACACACCCACAGGGTTGCCGTATGCATGGATCAACTTAAAGTATGGAGTGGTGGAGAATGAGACTACAGAAACAAGCACTTCAGGGTGTGGTTCTCTAATTTTGGAAATGGGAGCATTATCCCGATTGACTGGAGATCCCAAATACGAATCTGCAGCTTTACGTTCTCTCCGTAAATTGTGGAGCATGCGGAGTTCGTTGAATTTACTTGGTACGACACTGGATGTATCAACTGGGGACTGGATTGAGTATTCATCTGGGATTGGGGCTGGGGTTGATTCATTTTATGAGTATCTCTACAAGGCCCACATTCTTTTCGGAAAGGAGGAATTTTGGAGAATGTTTCATTCTGCTTATATTGCTGTGCAGAAATATTTTAGACATGGTCCATGGTACCATGAAGCTGATATGAGGACAGGAAAAGCAACTTATTGGCAACTTACAAGCCTTCAAGCATTTTGGCCTGGCCTACAGGCAGGGAATTCAAAACCTTTTCATATTAGTTCTTGTTGGAGACATTGCTGCTGCAAACTCATCCCACCGTATTTGTTGGATCATCAAATGTTGCATCCTACAGAAAAGTATTATCCTCTGCGTCCTGAATTTGCTGAGTCAACATTCTATCTATATCAAGCAACCAAAGATCCATGGTACATAGAAGTGGGTGAATCAATTGTGAATTCTCTAAATTTATACACGAAAGTGGAGGGAGGTTTTGCTAGCATTAGAGATGTCACAACTATGCAGTTGGAAGATCATCAGCATAGTTTCTTCCTCGCTGAGACGTGCAAGTATCTATATCTTCTGTTCGACGATTCATTTTTGGTTGAACAAAATTATGTTTTCACAACTGAGGGTCATCCCCTTCCAGTGTTAAGTAGTTGGCAGGATAGGCTTCCAGATACCTACATCCATAGTAACTGGACTTCTCTCAAGACTGAAAAGGAAGCAAGACGGACAAGTGCAATGTCCAAGCAAGTATGCCCTTCTACGACATTGAATTCATGGGAATGTGCCGGCCAACAAATTGAGAGTGCATGCCACATCCCTGATGTTCATAGTGACCACCGGTGTTTAACAGACGAAGAATGTGGGATTGACTCAACTAACTGCAGACGAAGATCATGTAGCATGGCTGGCTACTGCGGGCTATGGCTGTTCATATGA

Protein Analysis

568

Amino Acids

65.04

Weight (kDa)

6.06

Isoelectric Point (pI)

49.47

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_hydro_47 PF01532 43 - 343 3.9e-73 Glycosyl hydrolase family 47
Glyco_hydro_47 PF01532 368 - 471 8.9e-38 Glycosyl hydrolase family 47
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 483
Acc36I ACCTGC 1 cut(s) 541
Acc65I GGTACC 1 cut(s) 933
AccB1I GGYRCC 1 cut(s) 933
AccII CGCG 1 cut(s) 10
AciI CCGC 4 cut(s) 8, 170, 730, 1686
AclWI GGATC 7 cut(s) 71, 151, 274, 578, 671, 1101, 1178
AcoI YGGCCR 2 cut(s) 504, 1558
AcuI CTGAAG 1 cut(s) 606
AcyI GRCGYC 1 cut(s) 103
AfaI GTAC 4 cut(s) 124, 754, 935, 1193
AgeI ACCGGT 1 cut(s) 1608
AjiI CACGTC 1 cut(s) 1326
AjnI CCWGG 1 cut(s) 1003
AleI CACNNNNGTG 1 cut(s) 1241
AluBI AGCT 7 cut(s) 92, 181, 201, 238, 272, 698, 944
AluI AGCT 7 cut(s) 92, 181, 201, 238, 272, 698, 944
Alw26I GTCTC 4 cut(s) 94, 596, 1048, 1316
AlwI GGATC 7 cut(s) 71, 151, 274, 578, 671, 1101, 1178
AoxI GGCC 5 cut(s) 504, 843, 1001, 1006, 1558
ApeKI GCWGC 4 cut(s) 89, 695, 1062, 1065
AsiGI ACCGGT 1 cut(s) 1608
Asp718I GGTACC 1 cut(s) 933
AspLEI GCGC 1 cut(s) 12
AspS9I GGNCC 2 cut(s) 844, 926
AsuHPI GGTGA 3 cut(s) 196, 397, 1217
AsuNHI GCTAGC 1 cut(s) 1259
AvaII GGWCC 1 cut(s) 926
BanI GGYRCC 1 cut(s) 933
BarI GAAGNNNNNNTAC 2 cut(s) 1450, 1482
BbvI GCAGC 4 cut(s) 101, 707, 1049, 1052
BceAI ACGGC 1 cut(s) 544
BciT130I CCWGG 1 cut(s) 1005
BcoDI GTCTC 4 cut(s) 94, 596, 1048, 1316
BfaI CTAG 1 cut(s) 1260
BfmI CTRYAG 6 cut(s) 456, 606, 693, 1010, 1113, 1651
BfuAI ACCTGC 1 cut(s) 541
BisI GCNGC 5 cut(s) 8, 90, 696, 1063, 1066
BlsI GCNGC 5 cut(s) 9, 91, 697, 1064, 1067
Bme1390I CCNGG 1 cut(s) 1005
Bme18I GGWCC 1 cut(s) 926
BmgBI CACGTC 1 cut(s) 1326
BmgT120I GGNCC 2 cut(s) 844, 926
BmiI GGNNCC 1 cut(s) 935
BmrFI CCNGG 1 cut(s) 1005
BmrI ACTGGG 1 cut(s) 783
BmsI GCATC 2 cut(s) 367, 1117
BmtI GCTAGC 1 cut(s) 1263
BmuI ACTGGG 1 cut(s) 783
BpmI CTGGAG 1 cut(s) 693
BpuEI CTTGAG 1 cut(s) 1457
BsaHI GRCGYC 1 cut(s) 103
BsaJI CCNNGG 4 cut(s) 501, 507, 929, 1187
BsaWI WCCGGW 1 cut(s) 1608
BsaXI ACNNNNNCTCC 4 cut(s) 411, 441, 693, 723
Bse118I RCCGGY 2 cut(s) 1556, 1608
Bse1I ACTGG 6 cut(s) 676, 765, 778, 785, 1409, 1466
Bse3DI GCAATG 2 cut(s) 1057, 1512
BseBI CCWGG 1 cut(s) 1005
BseDI CCNNGG 4 cut(s) 501, 507, 929, 1187
BseGI GGATG 6 cut(s) 769, 1074, 1108, 1399, 1449, 1584
BseMI GCAATG 2 cut(s) 1057, 1512
BseMII CTCAG 4 cut(s) 121, 1140, 1311, 1383
BseNI ACTGG 6 cut(s) 676, 765, 778, 785, 1409, 1466
BseXI GCAGC 4 cut(s) 101, 707, 1049, 1052
BseYI CCCAGC 2 cut(s) 84, 809
BsgI GTGCAG 2 cut(s) 357, 926
Bsh1236I CGCG 1 cut(s) 10
BshFI GGCC 5 cut(s) 506, 845, 1003, 1008, 1560
BshNI GGYRCC 1 cut(s) 933
BshTI ACCGGT 1 cut(s) 1608
BsiSI CCGG 2 cut(s) 1557, 1609
BslFI GGGAC 1 cut(s) 791
BsmAI GTCTC 4 cut(s) 94, 596, 1048, 1316
BsmBI CGTCTC 2 cut(s) 94, 1316
BsmFI GGGAC 1 cut(s) 791
BsmI GAATGC 1 cut(s) 536
BsnI GGCC 5 cut(s) 506, 845, 1003, 1008, 1560
Bsp143I GATC 9 cut(s) 76, 156, 266, 570, 676, 1093, 1183, 1294, 1661
Bsp19I CCATGG 2 cut(s) 929, 1187
BspACI CCGC 4 cut(s) 8, 170, 730, 1686
BspANI GGCC 5 cut(s) 506, 845, 1003, 1008, 1560
BspCNI CTCAG 4 cut(s) 120, 1141, 1312, 1384
BspFNI CGCG 1 cut(s) 10
BspLI GGNNCC 1 cut(s) 935
BspMAI CTGCAG 2 cut(s) 697, 1655
BspMI ACCTGC 1 cut(s) 541
BspOI GCTAGC 1 cut(s) 1263
BspPI GGATC 7 cut(s) 71, 151, 274, 578, 671, 1101, 1178
BspQI GCTCTTC 1 cut(s) 41
BspT107I GGYRCC 1 cut(s) 933
BsrDI GCAATG 2 cut(s) 1057, 1512
BsrFI RCCGGY 2 cut(s) 1556, 1608
BsrI ACTGG 6 cut(s) 676, 765, 778, 785, 1409, 1466
BssAI RCCGGY 2 cut(s) 1556, 1608
BssECI CCNNGG 4 cut(s) 501, 507, 929, 1187
BssMI GATC 9 cut(s) 76, 156, 266, 570, 676, 1093, 1183, 1294, 1661
BssNI GRCGYC 1 cut(s) 103
BssT1I CCWWGG 3 cut(s) 501, 929, 1187
Bst2UI CCWGG 1 cut(s) 1005
Bst4CI ACNGT 1 cut(s) 1083
Bst6I CTCTTC 2 cut(s) 41, 92
BstACI GRCGYC 1 cut(s) 103
BstC8I GCNNGC 7 cut(s) 444, 728, 1261, 1558, 1579, 1678, 1688
BstDEI CTNAG 7 cut(s) 93, 107, 191, 215, 1149, 1320, 1392
BstDSI CCRYGG 2 cut(s) 929, 1187
BstF5I GGATG 6 cut(s) 769, 1074, 1108, 1399, 1449, 1584
BstFNI CGCG 1 cut(s) 10
BstHHI GCGC 1 cut(s) 12
BstKTI GATC 9 cut(s) 79, 159, 269, 573, 679, 1096, 1186, 1297, 1664
BstMAI GTCTC 4 cut(s) 94, 596, 1048, 1316
BstMBI GATC 9 cut(s) 76, 156, 266, 570, 676, 1093, 1183, 1294, 1661
BstMWI GCNNNNNNNGC 4 cut(s) 178, 899, 1432, 1677
BstNI CCWGG 1 cut(s) 1005
BstNSI RCATGY 2 cut(s) 730, 1581
BstSCI CCNGG 1 cut(s) 1003
BstSFI CTRYAG 6 cut(s) 456, 606, 693, 1010, 1113, 1651
BstUI CGCG 1 cut(s) 10
BstV1I GCAGC 4 cut(s) 101, 707, 1049, 1052
BstX2I RGATCY 2 cut(s) 676, 1183
BstYI RGATCY 2 cut(s) 676, 1183
BsuRI GGCC 5 cut(s) 506, 845, 1003, 1008, 1560
BtgI CCRYGG 2 cut(s) 929, 1187
BtrI CACGTC 1 cut(s) 1326
BtsCI GGATG 6 cut(s) 769, 1074, 1108, 1399, 1449, 1584
BtsIMutI CAGTG 3 cut(s) 321, 758, 1416
BveI ACCTGC 1 cut(s) 541
Cac8I GCNNGC 7 cut(s) 444, 728, 1261, 1558, 1579, 1678, 1688
CfoI GCGC 1 cut(s) 12
Cfr10I RCCGGY 2 cut(s) 1556, 1608
Cfr13I GGNCC 2 cut(s) 844, 926
CseI GACGC 2 cut(s) 111, 1124
Csp6I GTAC 4 cut(s) 123, 753, 934, 1192
CspAI ACCGGT 1 cut(s) 1608
CspCI CAANNNNNGTGG 2 cut(s) 1068, 1103
CviQI GTAC 4 cut(s) 123, 753, 934, 1192
DdeI CTNAG 7 cut(s) 93, 107, 191, 215, 1149, 1320, 1392
DpnI GATC 9 cut(s) 78, 158, 268, 572, 678, 1095, 1185, 1296, 1663
DpnII GATC 9 cut(s) 76, 156, 266, 570, 676, 1093, 1183, 1294, 1661
EaeI YGGCCR 2 cut(s) 504, 1558
Eam1104I CTCTTC 2 cut(s) 41, 92
EarI CTCTTC 2 cut(s) 41, 92
Eco130I CCWWGG 3 cut(s) 501, 929, 1187
Eco47I GGWCC 1 cut(s) 926
Eco57I CTGAAG 1 cut(s) 606
EcoRI GAATTC 3 cut(s) 1021, 1219, 1540
EcoRII CCWGG 1 cut(s) 1003
EcoT14I CCWWGG 3 cut(s) 501, 929, 1187
EcoT22I ATGCAT 2 cut(s) 142, 568
ErhI CCWWGG 3 cut(s) 501, 929, 1187
Esp3I CGTCTC 2 cut(s) 94, 1316
FaqI GGGAC 1 cut(s) 791
FauI CCCGC 1 cut(s) 1679
FauNDI CATATG 2 cut(s) 142, 1703
Fnu4HI GCNGC 5 cut(s) 8, 90, 696, 1063, 1066
FokI GGATG 6 cut(s) 776, 1061, 1095, 1386, 1436, 1571
Fsp4HI GCNGC 5 cut(s) 8, 90, 696, 1063, 1066
FspBI CTAG 1 cut(s) 1260
GlaI GCGC 1 cut(s) 11
GluI GCNGC 5 cut(s) 8, 90, 696, 1063, 1066
GsaI CCCAGC 2 cut(s) 88, 813
GsuI CTGGAG 1 cut(s) 693
HaeIII GGCC 5 cut(s) 506, 845, 1003, 1008, 1560
HapII CCGG 2 cut(s) 1557, 1609
HgaI GACGC 2 cut(s) 111, 1124
HhaI GCGC 1 cut(s) 12
Hin1I GRCGYC 1 cut(s) 103
Hin6I GCGC 1 cut(s) 10
HinP1I GCGC 1 cut(s) 10
HincII GTYRAC 1 cut(s) 1155
HindII GTYRAC 1 cut(s) 1155
HindIII AAGCTT 2 cut(s) 199, 236
HpaII CCGG 2 cut(s) 1557, 1609
HphI GGTGA 3 cut(s) 196, 397, 1217
Hpy166II GTNNAC 2 cut(s) 221, 1155
Hpy188I TCNGA 4 cut(s) 76, 110, 355, 860
Hpy188III TCNNGA 4 cut(s) 663, 1139, 1439, 1474
Hpy8I GTNNAC 2 cut(s) 221, 1155
Hpy99I CGWCG 1 cut(s) 1355
HpyAV CCTTC 3 cut(s) 998, 1415, 1536
HpyCH4III ACNGT 1 cut(s) 1083
HpyCH4IV ACGT 2 cut(s) 703, 1325
HpyF10VI GCNNNNNNNGC 4 cut(s) 178, 899, 1432, 1677
HpyF3I CTNAG 7 cut(s) 93, 107, 191, 215, 1149, 1320, 1392
HpySE526I ACGT 2 cut(s) 703, 1325
Hsp92I GRCGYC 1 cut(s) 103
HspAI GCGC 1 cut(s) 10
KpnI GGTACC 1 cut(s) 937
KroI GCCGGC 1 cut(s) 1556
KroNI GCCGGC 1 cut(s) 1558
Kzo9I GATC 9 cut(s) 76, 156, 266, 570, 676, 1093, 1183, 1294, 1661
LguI GCTCTTC 1 cut(s) 41
LmnI GCTCC 2 cut(s) 653, 723
Lsp1109I GCAGC 4 cut(s) 101, 707, 1049, 1052
LweI GCATC 2 cut(s) 367, 1117
MaeI CTAG 1 cut(s) 1260
MaeII ACGT 2 cut(s) 703, 1325
MaeIII GTNAC 5 cut(s) 19, 314, 1273, 1457, 1601
MalI GATC 9 cut(s) 78, 158, 268, 572, 678, 1095, 1185, 1296, 1663
MboI GATC 9 cut(s) 76, 156, 266, 570, 676, 1093, 1183, 1294, 1661
MboII GAAGA 9 cut(s) 28, 40, 43, 109, 1303, 1304, 1334, 1637, 1671
MfeI CAATTG 1 cut(s) 1212
MflI RGATCY 2 cut(s) 676, 1183
MlyI GAGTC 3 cut(s) 203, 1160, 1634
MmeI TCCRAC 3 cut(s) 1031, 1071, 1269
Mph1103I ATGCAT 2 cut(s) 142, 568
MroNI GCCGGC 1 cut(s) 1556
MseI TTAA 3 cut(s) 578, 1415, 1616
MslI CAYNNNNRTG 6 cut(s) 141, 410, 1199, 1241, 1280, 1549
MspI CCGG 2 cut(s) 1557, 1609
MspR9I CCNGG 1 cut(s) 1005
MunI CAATTG 1 cut(s) 1212
Mva1269I GAATGC 1 cut(s) 536
MvaI CCWGG 1 cut(s) 1005
MvnI CGCG 1 cut(s) 10
MwoI GCNNNNNNNGC 4 cut(s) 178, 899, 1432, 1677
NaeI GCCGGC 1 cut(s) 1558
NcoI CCATGG 2 cut(s) 929, 1187
NdeI CATATG 2 cut(s) 142, 1703
NdeII GATC 9 cut(s) 76, 156, 266, 570, 676, 1093, 1183, 1294, 1661
NgoMIV GCCGGC 1 cut(s) 1556
NheI GCTAGC 1 cut(s) 1259
NlaIV GGNNCC 1 cut(s) 935
NmeAIII GCCGAG 1 cut(s) 532
NmuCI GTSAC 3 cut(s) 19, 1273, 1601
NsiI ATGCAT 2 cut(s) 142, 568
NspI RCATGY 2 cut(s) 730, 1581
OliI CACNNNNGTG 1 cut(s) 1241
PaeI GCATGC 2 cut(s) 730, 1581
PciSI GCTCTTC 1 cut(s) 41
PcsI WCGNNNNNNNCGW 1 cut(s) 709
PctI GAATGC 1 cut(s) 536
PdiI GCCGGC 1 cut(s) 1558
PfeI GAWTC 7 cut(s) 287, 388, 452, 689, 818, 1208, 1355
PflFI GACNNNGTC 1 cut(s) 924
PinAI ACCGGT 1 cut(s) 1608
PkrI GCNGC 5 cut(s) 9, 91, 697, 1064, 1067
PleI GAGTC 3 cut(s) 203, 1159, 1634
PpsI GAGTC 3 cut(s) 203, 1159, 1634
PsiI TTATAA 1 cut(s) 483
Psp6I CCWGG 1 cut(s) 1003
PspFI CCCAGC 2 cut(s) 84, 809
PspGI CCWGG 1 cut(s) 1003
PspN4I GGNNCC 1 cut(s) 935
PspPI GGNCC 2 cut(s) 844, 926
PstI CTGCAG 2 cut(s) 697, 1655
PsuI RGATCY 2 cut(s) 676, 1183
PsyI GACNNNGTC 1 cut(s) 924
RsaI GTAC 4 cut(s) 124, 754, 935, 1193
RsaNI GTAC 4 cut(s) 123, 753, 934, 1192
RseI CAYNNNNRTG 6 cut(s) 141, 410, 1199, 1241, 1280, 1549
SapI GCTCTTC 1 cut(s) 41
SaqAI TTAA 3 cut(s) 578, 1415, 1616
SatI GCNGC 5 cut(s) 8, 90, 696, 1063, 1066
Sau3AI GATC 9 cut(s) 76, 156, 266, 570, 676, 1093, 1183, 1294, 1661
Sau96I GGNCC 2 cut(s) 844, 926
SchI GAGTC 3 cut(s) 203, 1160, 1634
ScrFI CCNGG 1 cut(s) 1005
SfaNI GCATC 2 cut(s) 367, 1117
SfcI CTRYAG 6 cut(s) 456, 606, 693, 1010, 1113, 1651
SgrAI CRCCGGYG 1 cut(s) 1608
SinI GGWCC 1 cut(s) 926
SmiMI CAYNNNNRTG 6 cut(s) 141, 410, 1199, 1241, 1280, 1549
SmlI CTYRAG 1 cut(s) 1472
SmoI CTYRAG 1 cut(s) 1472
SphI GCATGC 2 cut(s) 730, 1581
SsiI CCGC 4 cut(s) 8, 170, 730, 1686
SspI AATATT 1 cut(s) 914
SspMI CTAG 1 cut(s) 1260
StyD4I CCNGG 1 cut(s) 1003
StyI CCWWGG 3 cut(s) 501, 929, 1187
TaaI ACNGT 1 cut(s) 1083
TaiI ACGT 2 cut(s) 706, 1328
TaqI TCGA 2 cut(s) 62, 1350
TauI GCSGC 1 cut(s) 10
TfiI GAWTC 7 cut(s) 287, 388, 452, 689, 818, 1208, 1355
Tru1I TTAA 3 cut(s) 578, 1415, 1616
Tru9I TTAA 3 cut(s) 578, 1415, 1616
TscAI CASTG 3 cut(s) 328, 765, 1416
TseFI GTSAC 3 cut(s) 19, 1273, 1601
TseI GCWGC 4 cut(s) 89, 695, 1062, 1065
Tsp45I GTSAC 3 cut(s) 19, 1273, 1601
TspGWI ACGGA 3 cut(s) 110, 701, 1510
TspRI CASTG 3 cut(s) 328, 765, 1416
Tth111I GACNNNGTC 1 cut(s) 924
VpaK11BI GGWCC 1 cut(s) 926
XceI RCATGY 2 cut(s) 730, 1581
XspI CTAG 1 cut(s) 1260
Zsp2I ATGCAT 2 cut(s) 142, 568
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.