Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0005872

Physical Location & Seq

Genomic Coordinates Reverse (-)

56378701 .. 56379680

Gene Structure 980 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0426800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 318 bp

ATGGCGATCAGAAAAGCCAACCGGCTTACGCAAACTGCGGTGCTGAAGCAGATTCTGAAGAGGTGCTCCAGCTTGGGGAAGAAGCAGCAGTATGACGAACAGGGGCACCCTTTGGACGTGCCAAAGGGACATTTTGTGGTTTATGTTGGGGAAAACAGAAGCAGGTACATAGTACCCATCTCTTTCCTGACCCGACCTGAGTTCCAGAGCCTGCTTCACCAAGCCGAGGAGGAGTTCGGGTTCGATCACGACATGGGCCTTACCATTCCTTGCGAGGAAGAAGTTTTTCAGTCGCTAACGTCCATGCTCAGCGCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000139 GO:0003674 GO:0003824 GO:0004553 GO:0004559 GO:0004571 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005794 GO:0006491 GO:0006508 GO:0006511 GO:0006807 GO:0006950 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009100 GO:0009987 GO:0010033 GO:0010243 GO:0010498 GO:0012505 GO:0015923 GO:0015924 GO:0016020 GO:0016787 GO:0016798 GO:0019538 GO:0019941 GO:0030163 GO:0030433 GO:0031090 GO:0031984 GO:0033554 GO:0034976 GO:0036503 GO:0042221 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0051603 GO:0051716 GO:0071704 GO:0098588 GO:0098791 GO:1901135 GO:1901564 GO:1901565 GO:1901575 GO:1901698

KEGG Pathways

Metabolic & Signaling

ko04141 map04141

Pfam Domains

Protein Families

Glyco_hydro_47

Protein Analysis

105

Amino Acids

12.01

Weight (kDa)

6.41

Isoelectric Point (pI)

52.72

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Auxin_inducible	PF02519	23 - 103	1.7e-29	Auxin responsive protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0005872)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G27520
fragaria_vesca	FvH4_5g16460 FvH4_5g16460 FvH4_5g16460 FvH4_5g16460 FvH4_5g16460 FvH4_5g16460 FvH4_5g16460 FvH4_5g16460
malus_domestica	MD14G1185600.v1.1
prunus_persica	Prupe.5G178500_v2.0.a1 Prupe.5G178500_v2.0.a1 Prupe.5G178500_v2.0.a1 Prupe.5G178500_v2.0.a1 Prupe.5G178500_v2.0.a1 Prupe.5G178500_v2.0.a1
pyrus_communis	pycom14g15450
rosa_chinensis	RchiOBHm_Chr7g0179631
rosa_laevigata	RLG00000005335
rosa_multiflora	Rmu_sc0005329.1_g000027
rosa_roxburghii	Rroxscaffold_3G00222510 Rroxscaffold_3G00273580
rosa_rugosa	Rorug06G0426800
rosa_samantha	Rh7AG026300 Rh7BG025400 Rh7CG027500 Rh7DG027100
rosa_wichuraiana	Rw7G002110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	153
AccB1I	GGYRCC	1 cut(s)	105
AciI	CCGC	1 cut(s)	38
AcuI	CTGAAG	2 cut(s)	65, 77
AfaI	GTAC	2 cut(s)	167, 174
AfeI	AGCGCT	1 cut(s)	313
AfiI	CCNNNNNNNGG	2 cut(s)	75, 226
AjiI	CACGTC	1 cut(s)	118
AloI	GAACNNNNNNTCC	2 cut(s)	224, 256
AluBI	AGCT	1 cut(s)	72
AluI	AGCT	1 cut(s)	72
Alw21I	GWGCWC	1 cut(s)	68
AlwNI	CAGNNNCTG	2 cut(s)	55, 211
Aor51HI	AGCGCT	1 cut(s)	313
AoxI	GGCC	1 cut(s)	256
ApeKI	GCWGC	1 cut(s)	85
Asp700I	GAANNNNTTC	1 cut(s)	285
AspLEI	GCGC	1 cut(s)	314
AspS9I	GGNCC	1 cut(s)	256
AsuHPI	GGTGA	1 cut(s)	209
BaeGI	GKGCMC	1 cut(s)	108
BanI	GGYRCC	1 cut(s)	105
Bbv12I	GWGCWC	1 cut(s)	68
BbvI	GCAGC	1 cut(s)	97
BccI	CCATC	1 cut(s)	185
BfoI	RGCGCY	1 cut(s)	315
BfuAI	ACCTGC	1 cut(s)	153
BisI	GCNGC	1 cut(s)	86
BlpI	GCTNAGC	1 cut(s)	308
BlsI	GCNGC	1 cut(s)	87
BmgBI	CACGTC	1 cut(s)	118
BmgT120I	GGNCC	1 cut(s)	256
BmiI	GGNNCC	1 cut(s)	107
BpmI	CTGGAG	1 cut(s)	52
Bpu1102I	GCTNAGC	1 cut(s)	308
BsaJI	CCNNGG	1 cut(s)	225
BsaXI	ACNNNNNCTCC	2 cut(s)	224, 254
Bsc4I	CCNNNNNNNGG	2 cut(s)	75, 226
Bse118I	RCCGGY	1 cut(s)	21
BseDI	CCNNGG	1 cut(s)	225
BseLI	CCNNNNNNNGG	2 cut(s)	75, 226
BseMII	CTCAG	1 cut(s)	189
BseRI	GAGGAG	2 cut(s)	242, 245
BseSI	GKGCMC	1 cut(s)	108
BseXI	GCAGC	1 cut(s)	97
BshFI	GGCC	1 cut(s)	258
BshNI	GGYRCC	1 cut(s)	105
BsiHKAI	GWGCWC	1 cut(s)	68
BsiSI	CCGG	1 cut(s)	22
BslFI	GGGAC	1 cut(s)	141
BslI	CCNNNNNNNGG	2 cut(s)	75, 226
BsmFI	GGGAC	1 cut(s)	141
BsnI	GGCC	1 cut(s)	258
Bsp1286I	GDGCHC	2 cut(s)	68, 108
Bsp143I	GATC	2 cut(s)	6, 244
Bsp1720I	GCTNAGC	1 cut(s)	308
BspACI	CCGC	1 cut(s)	38
BspANI	GGCC	1 cut(s)	258
BspCNI	CTCAG	1 cut(s)	190
BspLI	GGNNCC	1 cut(s)	107
BspMI	ACCTGC	1 cut(s)	153
BspT107I	GGYRCC	1 cut(s)	105
BsrFI	RCCGGY	1 cut(s)	21
BssAI	RCCGGY	1 cut(s)	21
BssECI	CCNNGG	1 cut(s)	225
BssMI	GATC	2 cut(s)	6, 244
Bst6I	CTCTTC	1 cut(s)	53
BstC8I	GCNNGC	1 cut(s)	212
BstDEI	CTNAG	3 cut(s)	198, 308, 315
BstH2I	RGCGCY	1 cut(s)	315
BstHHI	GCGC	1 cut(s)	314
BstKTI	GATC	2 cut(s)	9, 247
BstMBI	GATC	2 cut(s)	6, 244
BstSLI	GKGCMC	1 cut(s)	108
BstV1I	GCAGC	1 cut(s)	97
BsuRI	GGCC	1 cut(s)	258
BtrI	CACGTC	1 cut(s)	118
BveI	ACCTGC	1 cut(s)	153
Cac8I	GCNNGC	1 cut(s)	212
CaiI	CAGNNNCTG	2 cut(s)	55, 211
CfoI	GCGC	1 cut(s)	314
Cfr10I	RCCGGY	1 cut(s)	21
Cfr13I	GGNCC	1 cut(s)	256
Csp6I	GTAC	2 cut(s)	166, 173
CviAII	CATG	2 cut(s)	253, 304
CviJI	RGCY	6 cut(s)	17, 25, 72, 210, 224, 258
CviKI_1	RGCY	6 cut(s)	17, 25, 72, 210, 224, 258
CviQI	GTAC	2 cut(s)	166, 173
DdeI	CTNAG	3 cut(s)	198, 308, 315
DpnI	GATC	2 cut(s)	8, 246
DpnII	GATC	2 cut(s)	6, 244
Eam1104I	CTCTTC	1 cut(s)	53
EarI	CTCTTC	1 cut(s)	53
Eco47III	AGCGCT	1 cut(s)	313
Eco57I	CTGAAG	2 cut(s)	65, 77
FaeI	CATG	2 cut(s)	256, 307
FaiI	YATR	5 cut(s)	93, 144, 170, 254, 305
FaqI	GGGAC	1 cut(s)	141
FatI	CATG	2 cut(s)	252, 303
Fnu4HI	GCNGC	1 cut(s)	86
Fsp4HI	GCNGC	1 cut(s)	86
GlaI	GCGC	1 cut(s)	313
GluI	GCNGC	1 cut(s)	86
GsuI	CTGGAG	1 cut(s)	52
HaeII	RGCGCY	1 cut(s)	315
HaeIII	GGCC	1 cut(s)	258
HapII	CCGG	1 cut(s)	22
HhaI	GCGC	1 cut(s)	314
Hin1II	CATG	2 cut(s)	256, 307
Hin6I	GCGC	1 cut(s)	312
HinP1I	GCGC	1 cut(s)	312
HinfI	GANTC	1 cut(s)	52
HpaII	CCGG	1 cut(s)	22
HphI	GGTGA	1 cut(s)	209
Hpy188I	TCNGA	2 cut(s)	11, 57
Hpy188III	TCNNGA	3 cut(s)	187, 205, 248
HpyCH4IV	ACGT	2 cut(s)	117, 299
HpyF3I	CTNAG	3 cut(s)	198, 308, 315
HpySE526I	ACGT	2 cut(s)	117, 299
Hsp92II	CATG	2 cut(s)	256, 307
HspAI	GCGC	1 cut(s)	312
Kzo9I	GATC	2 cut(s)	6, 244
LmnI	GCTCC	1 cut(s)	71
LpnPI	CCDG	8 cut(s)	35, 82, 86, 148, 200, 210, 218, 224
Lsp1109I	GCAGC	1 cut(s)	97
MaeII	ACGT	2 cut(s)	117, 299
MalI	GATC	2 cut(s)	8, 246
MboI	GATC	2 cut(s)	6, 244
MboII	GAAGA	3 cut(s)	70, 91, 290
MhlI	GDGCHC	2 cut(s)	68, 108
MnlI	CCTC	4 cut(s)	54, 220, 223, 268
MroXI	GAANNNNTTC	1 cut(s)	285
MspI	CCGG	1 cut(s)	22
NdeII	GATC	2 cut(s)	6, 244
NlaIII	CATG	2 cut(s)	256, 307
NlaIV	GGNNCC	1 cut(s)	107
NmeAIII	GCCGAG	1 cut(s)	250
PdmI	GAANNNNTTC	1 cut(s)	285
PfeI	GAWTC	1 cut(s)	52
PkrI	GCNGC	1 cut(s)	87
PspN4I	GGNNCC	1 cut(s)	107
PspPI	GGNCC	1 cut(s)	256
PstNI	CAGNNNCTG	2 cut(s)	55, 211
RsaI	GTAC	2 cut(s)	167, 174
RsaNI	GTAC	2 cut(s)	166, 173
SatI	GCNGC	1 cut(s)	86
Sau3AI	GATC	2 cut(s)	6, 244
Sau96I	GGNCC	1 cut(s)	256
SduI	GDGCHC	2 cut(s)	68, 108
SetI	ASST	6 cut(s)	65, 74, 120, 167, 199, 302
SsiI	CCGC	1 cut(s)	38
TaiI	ACGT	2 cut(s)	120, 302
TaqI	TCGA	1 cut(s)	243
TfiI	GAWTC	1 cut(s)	52
TseI	GCWGC	1 cut(s)	85
XmnI	GAANNNNTTC	1 cut(s)	285

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.