Rh7BG025400

Belongs to the glycosyl hydrolase 47 family

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
Physical Location & Seq
Reverse (-)
1811782 .. 1816657
4876 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7BG025400.1

Sequence Viewer

Length: 1347 bp
ATGTTGCCGCGCAAATCTGTGACATGGGTTCTGCTCTTCTTGTTCATCTTCTTCAACTTATCGACTTCCCAATCCGATCCTCGCTGGGCAGCTAAGAAGAGACGCCTCAGAAATAAAGTCCGTACCATGTTTTACCATGCATATGACAACTACATGATCCATGCGTTTCCGCATGATGAGCTAAAGCCTCTTAGTAAAAGTTTCACCGACTCTCTTAGTGAACTTGGAAATCTGAAGCTTGAACACCTACCACAAGACTATAATGGATCAGCTCTTACACTTATTGAGTCATTGTCCAGCCTTGTCATTATGGGTAACAACACTGAATTTGAAAGTGCAGTTGTTTGGCTTTCTGAAAATTTGACTTTTGATGTCGATGCGAGGGTGAATCTTTTTGAGTGCAACATAAGAGTGCTTGGAGGACTTGTTTCTGCTCATCTGCTTGCGACTGATTCTACAGACAGGTTGGGTCAAGGAGTTTATAAGAACCAACTGCTAACCTTGGCCGAGGATTTAGGGAAGCGTTTTCTACCTGCATTCAACACACCCACAGGGTTGCCGTATGCATGGATCAACTTAAAGTATGGAGTGGTGGAGAATGAGACTACAGAAACAAGCACTTCAGGGTGTGGTTCTCTAATTTTGGAAATGGGAGCATTATCCCGATTGACTGGAGATCCCAAATACGAATCTGCAGCTTTACGTTCTCTCCGTAAATTGTGGAGCATGCGGAGTTCGTTGAATTTACTTGGTACGACACTGGATGTATCAACTGGGGACTGGATTGAGTATTCATCTGGGATTGGGGCTGGGGTTGATTCATTTTATGAGTATCTCTACAAGGCCCACATTCTTTTCGGAAAGGAGGAGTTTTGGAGAATGTTTCATTCTGCTTATATTGCTGTGCAGAAATATTTTAGACATGGTCCATGGTACCACGAAGCTGATATGAGGACAGGAAAAGCAACTTATTGGCAACTTACAAGCCTTCAAGCATTTTGGCCTGGCCTACAGGTTCTTGTTGGAGACATTGCTGCTGCAAACTCATCCCACCGTGAGTTCTTCTATGTATGGAATAAGTTTGGAGTACTACCGGAGAGGTATTTGTTGGATCATCAAATGTTGCATCCTACAGAAAAGTATTATCCTCTGCGTCCTGAATTTGCCGAGTCAACATTCTATCTATATCAAGCAACCAAAGATCCATGGTACATAGAAGTGGGTGAATCAATTGTGAATTCTCTAAATTTATACACGAAAGTGGAGGGAGGTTTTGCTAGCGTTAGAGATGTCACAACTATGCAGTTGGAAGATCATCAGCATAGTTTCTTCCTCGCTGAGACGTAA

Protein Analysis

448

Amino Acids

51.32

Weight (kDa)

5.98

Isoelectric Point (pI)

41.12

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_hydro_47 PF01532 43 - 448 7.5e-102 Glycosyl hydrolase family 47
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 483
Acc36I ACCTGC 1 cut(s) 541
Acc65I GGTACC 1 cut(s) 933
AccB1I GGYRCC 1 cut(s) 933
AccII CGCG 1 cut(s) 10
AciI CCGC 3 cut(s) 8, 170, 730
AclWI GGATC 7 cut(s) 71, 151, 274, 578, 671, 1119, 1196
AcoI YGGCCR 1 cut(s) 504
AcsI RAATTY 6 cut(s) 326, 358, 742, 1160, 1237, 1246
AcuI CTGAAG 2 cut(s) 254, 606
AcyI GRCGYC 1 cut(s) 103
AfaI GTAC 5 cut(s) 124, 754, 935, 1089, 1211
AgsI TTSAA 6 cut(s) 55, 242, 332, 541, 742, 992
AjnI CCWGG 1 cut(s) 1003
AleI CACNNNNGTG 1 cut(s) 1259
AluBI AGCT 6 cut(s) 92, 181, 238, 272, 698, 944
AluI AGCT 6 cut(s) 92, 181, 238, 272, 698, 944
Alw26I GTCTC 4 cut(s) 94, 596, 1020, 1334
AlwI GGATC 7 cut(s) 71, 151, 274, 578, 671, 1119, 1196
AoxI GGCC 4 cut(s) 504, 843, 1001, 1006
ApeKI GCWGC 4 cut(s) 89, 695, 1034, 1037
ApoI RAATTY 6 cut(s) 326, 358, 742, 1160, 1237, 1246
Asp718I GGTACC 1 cut(s) 933
AspLEI GCGC 1 cut(s) 12
AspS9I GGNCC 2 cut(s) 844, 926
AsuHPI GGTGA 3 cut(s) 196, 397, 1235
AsuNHI GCTAGC 1 cut(s) 1277
AvaII GGWCC 1 cut(s) 926
BanI GGYRCC 1 cut(s) 933
BbvI GCAGC 4 cut(s) 101, 707, 1021, 1024
BceAI ACGGC 1 cut(s) 544
BciT130I CCWGG 1 cut(s) 1005
BcoDI GTCTC 4 cut(s) 94, 596, 1020, 1334
BfaI CTAG 1 cut(s) 1278
BfmI CTRYAG 5 cut(s) 456, 606, 693, 1010, 1131
BfuAI ACCTGC 1 cut(s) 541
BisI GCNGC 5 cut(s) 8, 90, 696, 1035, 1038
BlsI GCNGC 5 cut(s) 9, 91, 697, 1036, 1039
BmcAI AGTACT 1 cut(s) 1089
Bme1390I CCNGG 1 cut(s) 1005
Bme18I GGWCC 1 cut(s) 926
BmgT120I GGNCC 2 cut(s) 844, 926
BmiI GGNNCC 1 cut(s) 935
BmrFI CCNGG 1 cut(s) 1005
BmrI ACTGGG 1 cut(s) 783
BmsI GCATC 2 cut(s) 367, 1135
BmtI GCTAGC 1 cut(s) 1281
BmuI ACTGGG 1 cut(s) 783
BpmI CTGGAG 1 cut(s) 693
BsaHI GRCGYC 1 cut(s) 103
BsaJI CCNNGG 4 cut(s) 501, 507, 929, 1205
BsaWI WCCGGW 1 cut(s) 1093
BsaXI ACNNNNNCTCC 4 cut(s) 411, 441, 693, 723
Bse1I ACTGG 4 cut(s) 676, 765, 778, 785
Bse3DI GCAATG 1 cut(s) 1029
BseBI CCWGG 1 cut(s) 1005
BseDI CCNNGG 4 cut(s) 501, 507, 929, 1205
BseGI GGATG 3 cut(s) 769, 1046, 1126
BseMI GCAATG 1 cut(s) 1029
BseMII CTCAG 2 cut(s) 121, 1329
BseNI ACTGG 4 cut(s) 676, 765, 778, 785
BseRI GAGGAG 1 cut(s) 881
BseXI GCAGC 4 cut(s) 101, 707, 1021, 1024
BseYI CCCAGC 2 cut(s) 84, 809
BsgI GTGCAG 2 cut(s) 357, 926
Bsh1236I CGCG 1 cut(s) 10
BshFI GGCC 4 cut(s) 506, 845, 1003, 1008
BshNI GGYRCC 1 cut(s) 933
BsiSI CCGG 1 cut(s) 1094
BslFI GGGAC 1 cut(s) 791
BsmAI GTCTC 4 cut(s) 94, 596, 1020, 1334
BsmBI CGTCTC 2 cut(s) 94, 1334
BsmFI GGGAC 1 cut(s) 791
BsmI GAATGC 1 cut(s) 536
BsnI GGCC 4 cut(s) 506, 845, 1003, 1008
Bsp143I GATC 8 cut(s) 76, 156, 266, 570, 676, 1111, 1201, 1312
Bsp19I CCATGG 2 cut(s) 929, 1205
BspACI CCGC 3 cut(s) 8, 170, 730
BspANI GGCC 4 cut(s) 506, 845, 1003, 1008
BspCNI CTCAG 2 cut(s) 120, 1330
BspFNI CGCG 1 cut(s) 10
BspLI GGNNCC 1 cut(s) 935
BspMAI CTGCAG 1 cut(s) 697
BspMI ACCTGC 1 cut(s) 541
BspOI GCTAGC 1 cut(s) 1281
BspPI GGATC 7 cut(s) 71, 151, 274, 578, 671, 1119, 1196
BspQI GCTCTTC 1 cut(s) 41
BspT107I GGYRCC 1 cut(s) 933
BsrDI GCAATG 1 cut(s) 1029
BsrI ACTGG 4 cut(s) 676, 765, 778, 785
BssECI CCNNGG 4 cut(s) 501, 507, 929, 1205
BssMI GATC 8 cut(s) 76, 156, 266, 570, 676, 1111, 1201, 1312
BssNI GRCGYC 1 cut(s) 103
BssT1I CCWWGG 3 cut(s) 501, 929, 1205
Bst2UI CCWGG 1 cut(s) 1005
Bst4CI ACNGT 1 cut(s) 1055
Bst6I CTCTTC 2 cut(s) 41, 92
BstACI GRCGYC 1 cut(s) 103
BstC8I GCNNGC 3 cut(s) 444, 728, 1279
BstDEI CTNAG 5 cut(s) 93, 107, 191, 215, 1338
BstDSI CCRYGG 2 cut(s) 929, 1205
BstF5I GGATG 3 cut(s) 769, 1046, 1126
BstFNI CGCG 1 cut(s) 10
BstHHI GCGC 1 cut(s) 12
BstKTI GATC 8 cut(s) 79, 159, 269, 573, 679, 1114, 1204, 1315
BstMAI GTCTC 4 cut(s) 94, 596, 1020, 1334
BstMBI GATC 8 cut(s) 76, 156, 266, 570, 676, 1111, 1201, 1312
BstMWI GCNNNNNNNGC 2 cut(s) 178, 899
BstNI CCWGG 1 cut(s) 1005
BstNSI RCATGY 1 cut(s) 730
BstSCI CCNGG 1 cut(s) 1003
BstSFI CTRYAG 5 cut(s) 456, 606, 693, 1010, 1131
BstUI CGCG 1 cut(s) 10
BstV1I GCAGC 4 cut(s) 101, 707, 1021, 1024
BstX2I RGATCY 2 cut(s) 676, 1201
BstYI RGATCY 2 cut(s) 676, 1201
BsuRI GGCC 4 cut(s) 506, 845, 1003, 1008
BtgI CCRYGG 2 cut(s) 929, 1205
BtsCI GGATG 3 cut(s) 769, 1046, 1126
BtsIMutI CAGTG 2 cut(s) 321, 758
BveI ACCTGC 1 cut(s) 541
Cac8I GCNNGC 3 cut(s) 444, 728, 1279
CfoI GCGC 1 cut(s) 12
Cfr13I GGNCC 2 cut(s) 844, 926
CseI GACGC 2 cut(s) 111, 1142
Csp6I GTAC 5 cut(s) 123, 753, 934, 1088, 1210
CviQI GTAC 5 cut(s) 123, 753, 934, 1088, 1210
DdeI CTNAG 5 cut(s) 93, 107, 191, 215, 1338
DpnI GATC 8 cut(s) 78, 158, 268, 572, 678, 1113, 1203, 1314
DpnII GATC 8 cut(s) 76, 156, 266, 570, 676, 1111, 1201, 1312
EaeI YGGCCR 1 cut(s) 504
Eam1104I CTCTTC 2 cut(s) 41, 92
EarI CTCTTC 2 cut(s) 41, 92
Eco130I CCWWGG 3 cut(s) 501, 929, 1205
Eco47I GGWCC 1 cut(s) 926
Eco57I CTGAAG 2 cut(s) 254, 606
EcoRI GAATTC 1 cut(s) 1237
EcoRII CCWGG 1 cut(s) 1003
EcoT14I CCWWGG 3 cut(s) 501, 929, 1205
EcoT22I ATGCAT 2 cut(s) 142, 568
ErhI CCWWGG 3 cut(s) 501, 929, 1205
Esp3I CGTCTC 2 cut(s) 94, 1334
FaqI GGGAC 1 cut(s) 791
FauNDI CATATG 1 cut(s) 142
Fnu4HI GCNGC 5 cut(s) 8, 90, 696, 1035, 1038
FokI GGATG 3 cut(s) 776, 1033, 1113
Fsp4HI GCNGC 5 cut(s) 8, 90, 696, 1035, 1038
FspBI CTAG 1 cut(s) 1278
GlaI GCGC 1 cut(s) 11
GluI GCNGC 5 cut(s) 8, 90, 696, 1035, 1038
GsaI CCCAGC 2 cut(s) 88, 813
GsuI CTGGAG 1 cut(s) 693
HaeIII GGCC 4 cut(s) 506, 845, 1003, 1008
HapII CCGG 1 cut(s) 1094
HgaI GACGC 2 cut(s) 111, 1142
HhaI GCGC 1 cut(s) 12
Hin1I GRCGYC 1 cut(s) 103
Hin6I GCGC 1 cut(s) 10
HinP1I GCGC 1 cut(s) 10
HincII GTYRAC 1 cut(s) 1173
HindII GTYRAC 1 cut(s) 1173
HindIII AAGCTT 1 cut(s) 236
HinfI GANTC 8 cut(s) 209, 287, 388, 452, 689, 818, 1169, 1226
HpaII CCGG 1 cut(s) 1094
HphI GGTGA 3 cut(s) 196, 397, 1235
Hpy166II GTNNAC 2 cut(s) 221, 1173
Hpy188I TCNGA 5 cut(s) 76, 110, 234, 355, 860
Hpy188III TCNNGA 2 cut(s) 663, 1157
Hpy8I GTNNAC 2 cut(s) 221, 1173
HpyAV CCTTC 1 cut(s) 998
HpyCH4III ACNGT 1 cut(s) 1055
HpyCH4IV ACGT 2 cut(s) 703, 1343
HpyF10VI GCNNNNNNNGC 2 cut(s) 178, 899
HpyF3I CTNAG 5 cut(s) 93, 107, 191, 215, 1338
HpySE526I ACGT 2 cut(s) 703, 1343
Hsp92I GRCGYC 1 cut(s) 103
HspAI GCGC 1 cut(s) 10
KpnI GGTACC 1 cut(s) 937
Kzo9I GATC 8 cut(s) 76, 156, 266, 570, 676, 1111, 1201, 1312
LguI GCTCTTC 1 cut(s) 41
LmnI GCTCC 2 cut(s) 653, 723
Lsp1109I GCAGC 4 cut(s) 101, 707, 1021, 1024
LweI GCATC 2 cut(s) 367, 1135
MaeI CTAG 1 cut(s) 1278
MaeII ACGT 2 cut(s) 703, 1343
MaeIII GTNAC 3 cut(s) 19, 314, 1291
MalI GATC 8 cut(s) 78, 158, 268, 572, 678, 1113, 1203, 1314
MboI GATC 8 cut(s) 76, 156, 266, 570, 676, 1111, 1201, 1312
MboII GAAGA 7 cut(s) 28, 40, 43, 109, 1054, 1321, 1322
MfeI CAATTG 1 cut(s) 1230
MflI RGATCY 2 cut(s) 676, 1201
MluCI AATT 9 cut(s) 326, 358, 639, 716, 742, 1160, 1230, 1237, 1246
MlyI GAGTC 3 cut(s) 203, 296, 1178
MmeI TCCRAC 3 cut(s) 1003, 1089, 1287
Mph1103I ATGCAT 2 cut(s) 142, 568
MseI TTAA 1 cut(s) 578
MslI CAYNNNNRTG 5 cut(s) 141, 410, 1217, 1259, 1298
MspI CCGG 1 cut(s) 1094
MspR9I CCNGG 1 cut(s) 1005
MunI CAATTG 1 cut(s) 1230
Mva1269I GAATGC 1 cut(s) 536
MvaI CCWGG 1 cut(s) 1005
MvnI CGCG 1 cut(s) 10
MwoI GCNNNNNNNGC 2 cut(s) 178, 899
NcoI CCATGG 2 cut(s) 929, 1205
NdeI CATATG 1 cut(s) 142
NdeII GATC 8 cut(s) 76, 156, 266, 570, 676, 1111, 1201, 1312
NheI GCTAGC 1 cut(s) 1277
NlaIV GGNNCC 1 cut(s) 935
NmeAIII GCCGAG 2 cut(s) 532, 1192
NmuCI GTSAC 2 cut(s) 19, 1291
NsiI ATGCAT 2 cut(s) 142, 568
NspI RCATGY 1 cut(s) 730
OliI CACNNNNGTG 1 cut(s) 1259
PaeI GCATGC 1 cut(s) 730
PciSI GCTCTTC 1 cut(s) 41
PcsI WCGNNNNNNNCGW 1 cut(s) 709
PctI GAATGC 1 cut(s) 536
PfeI GAWTC 5 cut(s) 388, 452, 689, 818, 1226
PflFI GACNNNGTC 1 cut(s) 924
PkrI GCNGC 5 cut(s) 9, 91, 697, 1036, 1039
PleI GAGTC 3 cut(s) 203, 295, 1177
PpsI GAGTC 3 cut(s) 203, 295, 1177
PsiI TTATAA 1 cut(s) 483
Psp6I CCWGG 1 cut(s) 1003
PspFI CCCAGC 2 cut(s) 84, 809
PspGI CCWGG 1 cut(s) 1003
PspN4I GGNNCC 1 cut(s) 935
PspPI GGNCC 2 cut(s) 844, 926
PstI CTGCAG 1 cut(s) 697
PsuI RGATCY 2 cut(s) 676, 1201
PsyI GACNNNGTC 1 cut(s) 924
RsaI GTAC 5 cut(s) 124, 754, 935, 1089, 1211
RsaNI GTAC 5 cut(s) 123, 753, 934, 1088, 1210
RseI CAYNNNNRTG 5 cut(s) 141, 410, 1217, 1259, 1298
SapI GCTCTTC 1 cut(s) 41
SaqAI TTAA 1 cut(s) 578
SatI GCNGC 5 cut(s) 8, 90, 696, 1035, 1038
Sau3AI GATC 8 cut(s) 76, 156, 266, 570, 676, 1111, 1201, 1312
Sau96I GGNCC 2 cut(s) 844, 926
ScaI AGTACT 1 cut(s) 1089
SchI GAGTC 3 cut(s) 203, 296, 1178
ScrFI CCNGG 1 cut(s) 1005
SfaNI GCATC 2 cut(s) 367, 1135
SfcI CTRYAG 5 cut(s) 456, 606, 693, 1010, 1131
SinI GGWCC 1 cut(s) 926
SmiMI CAYNNNNRTG 5 cut(s) 141, 410, 1217, 1259, 1298
SphI GCATGC 1 cut(s) 730
Sse9I AATT 9 cut(s) 326, 358, 639, 716, 742, 1160, 1230, 1237, 1246
SsiI CCGC 3 cut(s) 8, 170, 730
SspI AATATT 1 cut(s) 914
SspMI CTAG 1 cut(s) 1278
StyD4I CCNGG 1 cut(s) 1003
StyI CCWWGG 3 cut(s) 501, 929, 1205
TaaI ACNGT 1 cut(s) 1055
TaiI ACGT 2 cut(s) 706, 1346
TaqI TCGA 2 cut(s) 62, 375
TasI AATT 9 cut(s) 326, 358, 639, 716, 742, 1160, 1230, 1237, 1246
TatI WGTACW 1 cut(s) 1087
TauI GCSGC 1 cut(s) 10
TfiI GAWTC 5 cut(s) 388, 452, 689, 818, 1226
Tru1I TTAA 1 cut(s) 578
Tru9I TTAA 1 cut(s) 578
TscAI CASTG 2 cut(s) 328, 765
TseFI GTSAC 2 cut(s) 19, 1291
TseI GCWGC 4 cut(s) 89, 695, 1034, 1037
Tsp45I GTSAC 2 cut(s) 19, 1291
TspDTI ATGAA 4 cut(s) 34, 783, 810, 875
TspGWI ACGGA 2 cut(s) 110, 701
TspRI CASTG 2 cut(s) 328, 765
Tth111I GACNNNGTC 1 cut(s) 924
VpaK11BI GGWCC 1 cut(s) 926
XapI RAATTY 6 cut(s) 326, 358, 742, 1160, 1237, 1246
XceI RCATGY 1 cut(s) 730
XspI CTAG 1 cut(s) 1278
ZrmI AGTACT 1 cut(s) 1089
Zsp2I ATGCAT 2 cut(s) 142, 568
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.