Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0005872

Physical Location & Seq

Genomic Coordinates Forward (+)

65330610 .. 65335411

Gene Structure 4802 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00273580.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1110 bp

ATGGATCAACTTAAAGGTTCTCTAATTTTGGAAATGGGAGCATTATCCCGATTGACTGGAGATCCCAAATACGAATCTGCAGCTTTACGTTCTCTCCGTAAATTGTGGAGCATGCGGAGTTCGTTGAATTTACTTGGTACGACACTGGATGTATCAACTGGGGACTGGATTGAGTATTCATCTGGGATTGGGGCTGGGGTTGATTCATTTTATGAGTATCTCTACAAGGCCCACATTCTTTTCGGAAAGGAGGAGTTTTGGAGAATGTTTCATTCTGCTTATATTGCTGTGCAGAAATATTTTAGACATGGTCCATGGTACCACGAAGCTGATATGAGGACAGGAAAAGCAACTTATTGGCAACTTACAAGCCTTCAAGCATTTTGGCCTGGCCTACAGGTTCTTGTTGGAGACATTGCTGCTGCAAACTCATCCCACCGTGAGTTCTTCTATGTATGGAATAAGTTTGGAGTACTACCGGAGAGGTATTTGTTGGATCATCAAATGTTGCATCCTACAGAAAAGTATTATCCTCTGCGTCCTGAATTTGCCGAGTCAACATTCTATCTATATCAAGCAACCAAAGATCCATGGTACATAGAAGTGGGTGAATCAATTGTGAATTCTCTAAATTTATACACGAAAGTGGAGGGAGGTTTTGCTAGCATTAGAGATGTCACAACTATGCAGTTGGAAGATCATCAGCATAGTTTCTTCCTTGCTGAGACGTGCAAGTATCTATATCTTCTGTTCGACGATTCATTTTTGGTTGAACAAAATTATGTTTTCACAACTGAGGGTCATCCCCTTCCGGTGTTAAGTAGTTGGCAGGATAGGCTTCCAGATACCTACATCCATAGTAACTGGACTTCTCTCAAGACTGAAAAGGAAGCAAGACAGACAAGTGCAATGTCCAAGCAAGTATGCCCTTCTACGACATTGAATTCATGGGAATGTGCCGGCCAACAAATCGAGAGTGCATGCCACATCCCTGATGTTCATAGTGACCACCGGTGTTTAACAGACGAAGAATGTGGGGTTGACTCAACAAACTGCAGACGAAGATCATGTAGCATGGCTGGCTACTGCGGGCTATGGCTGTTCATATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000139 GO:0003674 GO:0003824 GO:0004553 GO:0004559 GO:0004571 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005794 GO:0006491 GO:0006508 GO:0006511 GO:0006807 GO:0006950 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009100 GO:0009987 GO:0010033 GO:0010243 GO:0010498 GO:0012505 GO:0015923 GO:0015924 GO:0016020 GO:0016787 GO:0016798 GO:0019538 GO:0019941 GO:0030163 GO:0030433 GO:0031090 GO:0031984 GO:0033554 GO:0034976 GO:0036503 GO:0042221 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0051603 GO:0051716 GO:0071704 GO:0098588 GO:0098791 GO:1901135 GO:1901564 GO:1901565 GO:1901575 GO:1901698

KEGG Pathways

Metabolic & Signaling

ko04141 map04141

Pfam Domains

Protein Families

Glyco_hydro_47

Protein Analysis

369

Amino Acids

42.61

Weight (kDa)

5.6

Isoelectric Point (pI)

49.05

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_hydro_47	PF01532	6 - 272	1.1e-69	Glycosyl hydrolase family 47

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005872)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G27520
fragaria_vesca	FvH4_5g16460 FvH4_5g16460 FvH4_5g16460 FvH4_5g16460 FvH4_5g16460 FvH4_5g16460 FvH4_5g16460 FvH4_5g16460
malus_domestica	MD14G1185600.v1.1
prunus_persica	Prupe.5G178500_v2.0.a1 Prupe.5G178500_v2.0.a1 Prupe.5G178500_v2.0.a1 Prupe.5G178500_v2.0.a1 Prupe.5G178500_v2.0.a1 Prupe.5G178500_v2.0.a1
pyrus_communis	pycom14g15450
rosa_chinensis	RchiOBHm_Chr7g0179631
rosa_laevigata	RLG00000005335
rosa_multiflora	Rmu_sc0005329.1_g000027
rosa_roxburghii	Rroxscaffold_3G00222510 Rroxscaffold_3G00273580
rosa_rugosa	Rorug06G0426800
rosa_samantha	Rh7AG026300 Rh7BG025400 Rh7CG027500 Rh7DG027100
rosa_wichuraiana	Rw7G002110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	318
AccB1I	GGYRCC	1 cut(s)	318
AciI	CCGC	2 cut(s)	115, 1089
AclWI	GGATC	4 cut(s)	12, 56, 504, 581
AcoI	YGGCCR	1 cut(s)	961
AcsI	RAATTY	5 cut(s)	127, 545, 622, 631, 943
AfaI	GTAC	4 cut(s)	139, 320, 474, 596
AgeI	ACCGGT	1 cut(s)	1011
AgsI	TTSAA	4 cut(s)	127, 377, 773, 943
AjiI	CACGTC	1 cut(s)	729
AjnI	CCWGG	1 cut(s)	388
AleI	CACNNNNGTG	1 cut(s)	644
AluBI	AGCT	2 cut(s)	83, 329
AluI	AGCT	2 cut(s)	83, 329
Alw26I	GTCTC	2 cut(s)	405, 719
AlwI	GGATC	4 cut(s)	12, 56, 504, 581
AoxI	GGCC	4 cut(s)	228, 386, 391, 961
ApeKI	GCWGC	3 cut(s)	80, 419, 422
ApoI	RAATTY	5 cut(s)	127, 545, 622, 631, 943
AsiGI	ACCGGT	1 cut(s)	1011
Asp718I	GGTACC	1 cut(s)	318
AspS9I	GGNCC	2 cut(s)	229, 311
AsuHPI	GGTGA	1 cut(s)	620
AsuNHI	GCTAGC	1 cut(s)	662
AvaII	GGWCC	1 cut(s)	311
BanI	GGYRCC	1 cut(s)	318
BarI	GAAGNNNNNNTAC	2 cut(s)	853, 885
BbvI	GCAGC	3 cut(s)	92, 406, 409
BciT130I	CCWGG	1 cut(s)	390
BcoDI	GTCTC	2 cut(s)	405, 719
BfaI	CTAG	1 cut(s)	663
BfmI	CTRYAG	4 cut(s)	78, 395, 516, 1054
BisI	GCNGC	3 cut(s)	81, 420, 423
BlsI	GCNGC	3 cut(s)	82, 421, 424
BmcAI	AGTACT	1 cut(s)	474
Bme1390I	CCNGG	1 cut(s)	390
Bme18I	GGWCC	1 cut(s)	311
BmgBI	CACGTC	1 cut(s)	729
BmgT120I	GGNCC	2 cut(s)	229, 311
BmiI	GGNNCC	1 cut(s)	320
BmrFI	CCNGG	1 cut(s)	390
BmrI	ACTGGG	1 cut(s)	168
BmsI	GCATC	1 cut(s)	520
BmtI	GCTAGC	1 cut(s)	666
BmuI	ACTGGG	1 cut(s)	168
BpmI	CTGGAG	1 cut(s)	78
BpuEI	CTTGAG	1 cut(s)	860
BsaJI	CCNNGG	2 cut(s)	314, 590
BsaWI	WCCGGW	3 cut(s)	478, 811, 1011
BsaXI	ACNNNNNCTCC	2 cut(s)	78, 108
Bse118I	RCCGGY	2 cut(s)	959, 1011
Bse1I	ACTGG	5 cut(s)	61, 150, 163, 170, 869
Bse3DI	GCAATG	2 cut(s)	414, 915
BseBI	CCWGG	1 cut(s)	390
BseDI	CCNNGG	2 cut(s)	314, 590
BseGI	GGATG	6 cut(s)	154, 431, 511, 802, 852, 987
BseMI	GCAATG	2 cut(s)	414, 915
BseMII	CTCAG	2 cut(s)	714, 786
BseNI	ACTGG	5 cut(s)	61, 150, 163, 170, 869
BseRI	GAGGAG	1 cut(s)	266
BseXI	GCAGC	3 cut(s)	92, 406, 409
BseYI	CCCAGC	1 cut(s)	194
BsgI	GTGCAG	1 cut(s)	311
BshFI	GGCC	4 cut(s)	230, 388, 393, 963
BshNI	GGYRCC	1 cut(s)	318
BshTI	ACCGGT	1 cut(s)	1011
BsiSI	CCGG	4 cut(s)	479, 812, 960, 1012
BslFI	GGGAC	1 cut(s)	176
BsmAI	GTCTC	2 cut(s)	405, 719
BsmBI	CGTCTC	1 cut(s)	719
BsmFI	GGGAC	1 cut(s)	176
BsnI	GGCC	4 cut(s)	230, 388, 393, 963
Bsp143I	GATC	6 cut(s)	4, 61, 496, 586, 697, 1064
Bsp19I	CCATGG	2 cut(s)	314, 590
BspACI	CCGC	2 cut(s)	115, 1089
BspANI	GGCC	4 cut(s)	230, 388, 393, 963
BspCNI	CTCAG	2 cut(s)	715, 787
BspLI	GGNNCC	1 cut(s)	320
BspMAI	CTGCAG	2 cut(s)	82, 1058
BspOI	GCTAGC	1 cut(s)	666
BspPI	GGATC	4 cut(s)	12, 56, 504, 581
BspT107I	GGYRCC	1 cut(s)	318
BsrDI	GCAATG	2 cut(s)	414, 915
BsrFI	RCCGGY	2 cut(s)	959, 1011
BsrI	ACTGG	5 cut(s)	61, 150, 163, 170, 869
BssAI	RCCGGY	2 cut(s)	959, 1011
BssECI	CCNNGG	2 cut(s)	314, 590
BssMI	GATC	6 cut(s)	4, 61, 496, 586, 697, 1064
BssT1I	CCWWGG	2 cut(s)	314, 590
Bst2UI	CCWGG	1 cut(s)	390
Bst4CI	ACNGT	1 cut(s)	440
BstC8I	GCNNGC	6 cut(s)	113, 664, 961, 982, 1081, 1091
BstDEI	CTNAG	2 cut(s)	723, 795
BstDSI	CCRYGG	2 cut(s)	314, 590
BstF5I	GGATG	6 cut(s)	154, 431, 511, 802, 852, 987
BstKTI	GATC	6 cut(s)	7, 64, 499, 589, 700, 1067
BstMAI	GTCTC	2 cut(s)	405, 719
BstMBI	GATC	6 cut(s)	4, 61, 496, 586, 697, 1064
BstMWI	GCNNNNNNNGC	3 cut(s)	284, 835, 1080
BstNI	CCWGG	1 cut(s)	390
BstNSI	RCATGY	2 cut(s)	115, 984
BstSCI	CCNGG	1 cut(s)	388
BstSFI	CTRYAG	4 cut(s)	78, 395, 516, 1054
BstV1I	GCAGC	3 cut(s)	92, 406, 409
BstX2I	RGATCY	2 cut(s)	61, 586
BstYI	RGATCY	2 cut(s)	61, 586
BsuRI	GGCC	4 cut(s)	230, 388, 393, 963
BtgI	CCRYGG	2 cut(s)	314, 590
BtrI	CACGTC	1 cut(s)	729
BtsCI	GGATG	6 cut(s)	154, 431, 511, 802, 852, 987
BtsIMutI	CAGTG	1 cut(s)	143
Cac8I	GCNNGC	6 cut(s)	113, 664, 961, 982, 1081, 1091
Cfr10I	RCCGGY	2 cut(s)	959, 1011
Cfr13I	GGNCC	2 cut(s)	229, 311
CseI	GACGC	1 cut(s)	527
Csp6I	GTAC	4 cut(s)	138, 319, 473, 595
CspAI	ACCGGT	1 cut(s)	1011
CviAII	CATG	8 cut(s)	112, 308, 315, 591, 948, 981, 1068, 1075
CviQI	GTAC	4 cut(s)	138, 319, 473, 595
DdeI	CTNAG	2 cut(s)	723, 795
DpnI	GATC	6 cut(s)	6, 63, 498, 588, 699, 1066
DpnII	GATC	6 cut(s)	4, 61, 496, 586, 697, 1064
EaeI	YGGCCR	1 cut(s)	961
Eco130I	CCWWGG	2 cut(s)	314, 590
Eco47I	GGWCC	1 cut(s)	311
EcoRI	GAATTC	2 cut(s)	622, 943
EcoRII	CCWGG	1 cut(s)	388
EcoT14I	CCWWGG	2 cut(s)	314, 590
ErhI	CCWWGG	2 cut(s)	314, 590
Esp3I	CGTCTC	1 cut(s)	719
FaeI	CATG	8 cut(s)	115, 311, 318, 594, 951, 984, 1071, 1078
FaqI	GGGAC	1 cut(s)	176
FatI	CATG	8 cut(s)	111, 307, 314, 590, 947, 980, 1067, 1074
FauI	CCCGC	1 cut(s)	1082
FauNDI	CATATG	1 cut(s)	1106
Fnu4HI	GCNGC	3 cut(s)	81, 420, 423
FokI	GGATG	6 cut(s)	161, 418, 498, 789, 839, 974
Fsp4HI	GCNGC	3 cut(s)	81, 420, 423
FspBI	CTAG	1 cut(s)	663
GluI	GCNGC	3 cut(s)	81, 420, 423
GsaI	CCCAGC	1 cut(s)	198
GsuI	CTGGAG	1 cut(s)	78
HaeIII	GGCC	4 cut(s)	230, 388, 393, 963
HapII	CCGG	4 cut(s)	479, 812, 960, 1012
HgaI	GACGC	1 cut(s)	527
Hin1II	CATG	8 cut(s)	115, 311, 318, 594, 951, 984, 1071, 1078
HincII	GTYRAC	2 cut(s)	558, 1042
HindII	GTYRAC	2 cut(s)	558, 1042
HinfI	GANTC	6 cut(s)	74, 203, 554, 611, 758, 1043
HpaII	CCGG	4 cut(s)	479, 812, 960, 1012
HphI	GGTGA	1 cut(s)	620
Hpy166II	GTNNAC	2 cut(s)	558, 1042
Hpy188I	TCNGA	1 cut(s)	245
Hpy188III	TCNNGA	5 cut(s)	48, 542, 842, 877, 973
Hpy8I	GTNNAC	2 cut(s)	558, 1042
Hpy99I	CGWCG	1 cut(s)	758
HpyAV	CCTTC	3 cut(s)	383, 818, 939
HpyCH4III	ACNGT	1 cut(s)	440
HpyCH4IV	ACGT	2 cut(s)	88, 728
HpyCH4V	TGCA	9 cut(s)	80, 292, 425, 511, 688, 732, 908, 980, 1056
HpyF10VI	GCNNNNNNNGC	3 cut(s)	284, 835, 1080
HpyF3I	CTNAG	2 cut(s)	723, 795
HpySE526I	ACGT	2 cut(s)	88, 728
Hsp92II	CATG	8 cut(s)	115, 311, 318, 594, 951, 984, 1071, 1078
KpnI	GGTACC	1 cut(s)	322
KroI	GCCGGC	1 cut(s)	959
KroNI	GCCGGC	1 cut(s)	961
Kzo9I	GATC	6 cut(s)	4, 61, 496, 586, 697, 1064
LmnI	GCTCC	2 cut(s)	38, 108
Lsp1109I	GCAGC	3 cut(s)	92, 406, 409
LweI	GCATC	1 cut(s)	520
MaeI	CTAG	1 cut(s)	663
MaeII	ACGT	2 cut(s)	88, 728
MaeIII	GTNAC	3 cut(s)	676, 860, 1004
MalI	GATC	6 cut(s)	6, 63, 498, 588, 699, 1066
MboI	GATC	6 cut(s)	4, 61, 496, 586, 697, 1064
MboII	GAAGA	6 cut(s)	439, 706, 707, 737, 1040, 1074
MfeI	CAATTG	1 cut(s)	615
MflI	RGATCY	2 cut(s)	61, 586
MluCI	AATT	9 cut(s)	24, 101, 127, 545, 615, 622, 631, 778, 943
MlyI	GAGTC	2 cut(s)	563, 1037
MmeI	TCCRAC	3 cut(s)	388, 474, 672
MnlI	CCTC	7 cut(s)	244, 330, 477, 543, 643, 647, 790
MroNI	GCCGGC	1 cut(s)	959
MseI	TTAA	3 cut(s)	12, 818, 1019
MslI	CAYNNNNRTG	4 cut(s)	602, 644, 683, 952
MspI	CCGG	4 cut(s)	479, 812, 960, 1012
MspR9I	CCNGG	1 cut(s)	390
MunI	CAATTG	1 cut(s)	615
MvaI	CCWGG	1 cut(s)	390
MwoI	GCNNNNNNNGC	3 cut(s)	284, 835, 1080
NaeI	GCCGGC	1 cut(s)	961
NcoI	CCATGG	2 cut(s)	314, 590
NdeI	CATATG	1 cut(s)	1106
NdeII	GATC	6 cut(s)	4, 61, 496, 586, 697, 1064
NgoMIV	GCCGGC	1 cut(s)	959
NheI	GCTAGC	1 cut(s)	662
NlaIII	CATG	8 cut(s)	115, 311, 318, 594, 951, 984, 1071, 1078
NlaIV	GGNNCC	1 cut(s)	320
NmeAIII	GCCGAG	1 cut(s)	577
NmuCI	GTSAC	2 cut(s)	676, 1004
NspI	RCATGY	2 cut(s)	115, 984
OliI	CACNNNNGTG	1 cut(s)	644
PaeI	GCATGC	2 cut(s)	115, 984
PcsI	WCGNNNNNNNCGW	1 cut(s)	94
PdiI	GCCGGC	1 cut(s)	961
PfeI	GAWTC	4 cut(s)	74, 203, 611, 758
PflFI	GACNNNGTC	1 cut(s)	309
PinAI	ACCGGT	1 cut(s)	1011
PkrI	GCNGC	3 cut(s)	82, 421, 424
PleI	GAGTC	2 cut(s)	562, 1037
PpsI	GAGTC	2 cut(s)	562, 1037
Psp6I	CCWGG	1 cut(s)	388
PspFI	CCCAGC	1 cut(s)	194
PspGI	CCWGG	1 cut(s)	388
PspN4I	GGNNCC	1 cut(s)	320
PspPI	GGNCC	2 cut(s)	229, 311
PstI	CTGCAG	2 cut(s)	82, 1058
PsuI	RGATCY	2 cut(s)	61, 586
PsyI	GACNNNGTC	1 cut(s)	309
RsaI	GTAC	4 cut(s)	139, 320, 474, 596
RsaNI	GTAC	4 cut(s)	138, 319, 473, 595
RseI	CAYNNNNRTG	4 cut(s)	602, 644, 683, 952
SaqAI	TTAA	3 cut(s)	12, 818, 1019
SatI	GCNGC	3 cut(s)	81, 420, 423
Sau3AI	GATC	6 cut(s)	4, 61, 496, 586, 697, 1064
Sau96I	GGNCC	2 cut(s)	229, 311
ScaI	AGTACT	1 cut(s)	474
SchI	GAGTC	2 cut(s)	563, 1037
ScrFI	CCNGG	1 cut(s)	390
SetI	ASST	9 cut(s)	19, 85, 91, 331, 402, 488, 658, 731, 851
SfaNI	GCATC	1 cut(s)	520
SfcI	CTRYAG	4 cut(s)	78, 395, 516, 1054
SgrAI	CRCCGGYG	1 cut(s)	1011
SinI	GGWCC	1 cut(s)	311
SmiMI	CAYNNNNRTG	4 cut(s)	602, 644, 683, 952
SmlI	CTYRAG	1 cut(s)	875
SmoI	CTYRAG	1 cut(s)	875
SphI	GCATGC	2 cut(s)	115, 984
Sse9I	AATT	9 cut(s)	24, 101, 127, 545, 615, 622, 631, 778, 943
SsiI	CCGC	2 cut(s)	115, 1089
SspI	AATATT	1 cut(s)	299
SspMI	CTAG	1 cut(s)	663
StyD4I	CCNGG	1 cut(s)	388
StyI	CCWWGG	2 cut(s)	314, 590
TaaI	ACNGT	1 cut(s)	440
TaiI	ACGT	2 cut(s)	91, 731
TaqI	TCGA	2 cut(s)	753, 972
TasI	AATT	9 cut(s)	24, 101, 127, 545, 615, 622, 631, 778, 943
TatI	WGTACW	1 cut(s)	472
TfiI	GAWTC	4 cut(s)	74, 203, 611, 758
Tru1I	TTAA	3 cut(s)	12, 818, 1019
Tru9I	TTAA	3 cut(s)	12, 818, 1019
TscAI	CASTG	1 cut(s)	150
TseFI	GTSAC	2 cut(s)	676, 1004
TseI	GCWGC	3 cut(s)	80, 419, 422
Tsp45I	GTSAC	2 cut(s)	676, 1004
TspDTI	ATGAA	7 cut(s)	168, 195, 260, 750, 936, 989, 1093
TspGWI	ACGGA	1 cut(s)	86
TspRI	CASTG	1 cut(s)	150
Tth111I	GACNNNGTC	1 cut(s)	309
VpaK11BI	GGWCC	1 cut(s)	311
XapI	RAATTY	5 cut(s)	127, 545, 622, 631, 943
XceI	RCATGY	2 cut(s)	115, 984
XspI	CTAG	1 cut(s)	663
ZrmI	AGTACT	1 cut(s)	474

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.