Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0005872

Physical Location & Seq

Genomic Coordinates Reverse (-)

1979327 .. 1983835

Gene Structure 4509 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG027500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1332 bp

ATGCTGCCGCGCAAATCTGTGACATGGGTTCTGCTCTTCTTGTTCATCTTCTTCAACTTATCGACTTCCCAATCCGATCCTCGCTGGGCAGCTAAGAAGAGGCGCCTCAGAAATAAAGTCCGTACCATGTTTTACCATGCATATGACAACTACATGATCCATGCGTTTCCGCATGATGAGCTAAAGCCTCTTAGTAAAAGTTTCACCGACTCTCTTAGTGAACTTGGAAATTTGAAGCTTGAACACCTACCACAAGACTATAATGGATCAGCTCTTACACTTATTGATTCATTGTCCAGCCTTGTCATCATGGGTAACAACACTGAATTTGAAAGTGCAGTTGTTTGGCTTTCTGAAAATTTGACTTTTGATGTTGATGCGAGGGTGAATCTTTTTGAGTGCAACATAAGAGTGCTTGGAGGACTTGTTTCTGCTCATCTGCTTGCGACTGATTCTACAGACAGGTTGGGTCAAGGAGTTTATAAGAACCAACTGCTAACCTTGGCCGAGGATTTAGGGAAGCGTTTTCTACCTGCATTCAACACACCCACAGGGTTGCCGTATGCATGGATCAACTTAAAGTATGGAGTGGTGGAGAATGAGACTACAGAAACAAGCACTTCAGGGTGTGGTTCTCTAATTTTGGAAATGGGAGCATTATCCCGATTGACTGGAGATCCCAAATACGAATCTGCAGCTTTACGTTCTCTCCGTAAATTGTGGAGCATGCGGAGTTCGTTGAATTTACTTGGTACGACACTGGATGTATCAACTGGGGACTGGATTGAGTATTCATCTGGGATTGGGGCTGGGGTTGATTCATTTTATGAGTATCTCTACAAGGCCCACATTCTTTTCGGAAAGGAGGAGTTTTGGAGAATGTTTCATTCTGCTTATATTGCTGTGCAGAAATATTTTAGACATGGTCCATGGTACCACGAAGCTGATATGAGGACAGGAAAAGCAACTTATTGGCAACTTACAAGCCTTCAAGCATTTTGGCCTGGCCTACAGGTTCTTGTTGGAGACATTGCTGCTGCAAACTCATCCCACCGTGAGTTCTTCTATGTATGGAATAAGTTTGGAGTACTACCGGAGAGGTATTTGTTGGATCATCAAATGTTGCATCCTACAGAAAAGTATTATCCTCTGCGTCCTGAATTTGCTGAGTCAACATTCTATCTATATCAAGCAACCAAAGGTCTGATGATTGTCTATTTGTCTTTATTAGTAATCTTCATTATCAGTCGGGATTTAATATGCATGCATACCTCTTCATGCATGAAAACAATTACCATGTCATCTTACATAAGCCTTCTTTGTGTACTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000139 GO:0003674 GO:0003824 GO:0004553 GO:0004559 GO:0004571 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005794 GO:0006491 GO:0006508 GO:0006511 GO:0006807 GO:0006950 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009100 GO:0009987 GO:0010033 GO:0010243 GO:0010498 GO:0012505 GO:0015923 GO:0015924 GO:0016020 GO:0016787 GO:0016798 GO:0019538 GO:0019941 GO:0030163 GO:0030433 GO:0031090 GO:0031984 GO:0033554 GO:0034976 GO:0036503 GO:0042221 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0051603 GO:0051716 GO:0071704 GO:0098588 GO:0098791 GO:1901135 GO:1901564 GO:1901565 GO:1901575 GO:1901698

KEGG Pathways

Metabolic & Signaling

ko04141 map04141

Pfam Domains

Protein Families

Glyco_hydro_47

Protein Analysis

443

Amino Acids

50.66

Weight (kDa)

6.9

Isoelectric Point (pI)

44.6

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_hydro_47	PF01532	43 - 400	1.1e-85	Glycosyl hydrolase family 47

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005872)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G27520
fragaria_vesca	FvH4_5g16460 FvH4_5g16460 FvH4_5g16460 FvH4_5g16460 FvH4_5g16460 FvH4_5g16460 FvH4_5g16460 FvH4_5g16460
malus_domestica	MD14G1185600.v1.1
prunus_persica	Prupe.5G178500_v2.0.a1 Prupe.5G178500_v2.0.a1 Prupe.5G178500_v2.0.a1 Prupe.5G178500_v2.0.a1 Prupe.5G178500_v2.0.a1 Prupe.5G178500_v2.0.a1
pyrus_communis	pycom14g15450
rosa_chinensis	RchiOBHm_Chr7g0179631
rosa_laevigata	RLG00000005335
rosa_multiflora	Rmu_sc0005329.1_g000027
rosa_roxburghii	Rroxscaffold_3G00222510 Rroxscaffold_3G00273580
rosa_rugosa	Rorug06G0426800
rosa_samantha	Rh7AG026300 Rh7BG025400 Rh7CG027500 Rh7DG027100
rosa_wichuraiana	Rw7G002110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	483
Acc36I	ACCTGC	1 cut(s)	541
Acc65I	GGTACC	1 cut(s)	933
AccB1I	GGYRCC	2 cut(s)	102, 933
AccII	CGCG	1 cut(s)	10
AciI	CCGC	3 cut(s)	8, 170, 730
AclWI	GGATC	6 cut(s)	71, 151, 274, 578, 671, 1119
AcoI	YGGCCR	1 cut(s)	504
AcsI	RAATTY	5 cut(s)	229, 326, 358, 742, 1160
AcuI	CTGAAG	1 cut(s)	606
AcyI	GRCGYC	1 cut(s)	103
AfaI	GTAC	5 cut(s)	124, 754, 935, 1089, 1326
AgsI	TTSAA	7 cut(s)	55, 235, 242, 332, 541, 742, 992
AjnI	CCWGG	1 cut(s)	1003
AluBI	AGCT	6 cut(s)	92, 181, 238, 272, 698, 944
AluI	AGCT	6 cut(s)	92, 181, 238, 272, 698, 944
Alw26I	GTCTC	2 cut(s)	596, 1020
AlwI	GGATC	6 cut(s)	71, 151, 274, 578, 671, 1119
AoxI	GGCC	4 cut(s)	504, 843, 1001, 1006
ApeKI	GCWGC	5 cut(s)	4, 89, 695, 1034, 1037
ApoI	RAATTY	5 cut(s)	229, 326, 358, 742, 1160
Asp718I	GGTACC	1 cut(s)	933
AspLEI	GCGC	2 cut(s)	12, 105
AspS9I	GGNCC	2 cut(s)	844, 926
AsuHPI	GGTGA	2 cut(s)	196, 397
AvaII	GGWCC	1 cut(s)	926
BanI	GGYRCC	2 cut(s)	102, 933
BbvI	GCAGC	4 cut(s)	101, 707, 1021, 1024
BceAI	ACGGC	1 cut(s)	544
BciT130I	CCWGG	1 cut(s)	1005
BcoDI	GTCTC	2 cut(s)	596, 1020
BfmI	CTRYAG	5 cut(s)	456, 606, 693, 1010, 1131
BfoI	RGCGCY	1 cut(s)	106
BfuAI	ACCTGC	1 cut(s)	541
BisI	GCNGC	6 cut(s)	5, 8, 90, 696, 1035, 1038
BlsI	GCNGC	6 cut(s)	6, 9, 91, 697, 1036, 1039
BmcAI	AGTACT	1 cut(s)	1089
Bme1390I	CCNGG	1 cut(s)	1005
Bme18I	GGWCC	1 cut(s)	926
BmgT120I	GGNCC	2 cut(s)	844, 926
BmiI	GGNNCC	2 cut(s)	104, 935
BmrFI	CCNGG	1 cut(s)	1005
BmrI	ACTGGG	1 cut(s)	783
BmsI	GCATC	2 cut(s)	367, 1135
BmuI	ACTGGG	1 cut(s)	783
BpmI	CTGGAG	1 cut(s)	693
BsaHI	GRCGYC	1 cut(s)	103
BsaJI	CCNNGG	3 cut(s)	501, 507, 929
BsaWI	WCCGGW	1 cut(s)	1093
BsaXI	ACNNNNNCTCC	4 cut(s)	411, 441, 693, 723
Bse1I	ACTGG	4 cut(s)	676, 765, 778, 785
Bse3DI	GCAATG	1 cut(s)	1029
BseBI	CCWGG	1 cut(s)	1005
BseDI	CCNNGG	3 cut(s)	501, 507, 929
BseGI	GGATG	3 cut(s)	769, 1046, 1126
BseMI	GCAATG	1 cut(s)	1029
BseMII	CTCAG	2 cut(s)	121, 1158
BseNI	ACTGG	4 cut(s)	676, 765, 778, 785
BseRI	GAGGAG	1 cut(s)	881
BseXI	GCAGC	4 cut(s)	101, 707, 1021, 1024
BseYI	CCCAGC	2 cut(s)	84, 809
BsgI	GTGCAG	2 cut(s)	357, 926
Bsh1236I	CGCG	1 cut(s)	10
BshFI	GGCC	4 cut(s)	506, 845, 1003, 1008
BshNI	GGYRCC	2 cut(s)	102, 933
BsiSI	CCGG	1 cut(s)	1094
BslFI	GGGAC	1 cut(s)	791
BsmAI	GTCTC	2 cut(s)	596, 1020
BsmFI	GGGAC	1 cut(s)	791
BsmI	GAATGC	1 cut(s)	536
BsnI	GGCC	4 cut(s)	506, 845, 1003, 1008
Bsp143I	GATC	6 cut(s)	76, 156, 266, 570, 676, 1111
Bsp19I	CCATGG	1 cut(s)	929
BspACI	CCGC	3 cut(s)	8, 170, 730
BspANI	GGCC	4 cut(s)	506, 845, 1003, 1008
BspCNI	CTCAG	2 cut(s)	120, 1159
BspFNI	CGCG	1 cut(s)	10
BspLI	GGNNCC	2 cut(s)	104, 935
BspMAI	CTGCAG	1 cut(s)	697
BspMI	ACCTGC	1 cut(s)	541
BspPI	GGATC	6 cut(s)	71, 151, 274, 578, 671, 1119
BspQI	GCTCTTC	1 cut(s)	41
BspT107I	GGYRCC	2 cut(s)	102, 933
BsrDI	GCAATG	1 cut(s)	1029
BsrI	ACTGG	4 cut(s)	676, 765, 778, 785
BssECI	CCNNGG	3 cut(s)	501, 507, 929
BssMI	GATC	6 cut(s)	76, 156, 266, 570, 676, 1111
BssNI	GRCGYC	1 cut(s)	103
BssT1I	CCWWGG	2 cut(s)	501, 929
Bst2UI	CCWGG	1 cut(s)	1005
Bst4CI	ACNGT	1 cut(s)	1055
Bst6I	CTCTTC	3 cut(s)	41, 92, 1279
BstACI	GRCGYC	1 cut(s)	103
BstC8I	GCNNGC	3 cut(s)	444, 728, 1265
BstDEI	CTNAG	5 cut(s)	93, 107, 191, 215, 1167
BstDSI	CCRYGG	1 cut(s)	929
BstF5I	GGATG	3 cut(s)	769, 1046, 1126
BstFNI	CGCG	1 cut(s)	10
BstH2I	RGCGCY	1 cut(s)	106
BstHHI	GCGC	2 cut(s)	12, 105
BstKTI	GATC	6 cut(s)	79, 159, 269, 573, 679, 1114
BstMAI	GTCTC	2 cut(s)	596, 1020
BstMBI	GATC	6 cut(s)	76, 156, 266, 570, 676, 1111
BstMWI	GCNNNNNNNGC	2 cut(s)	178, 899
BstNI	CCWGG	1 cut(s)	1005
BstNSI	RCATGY	2 cut(s)	730, 1267
BstSCI	CCNGG	1 cut(s)	1003
BstSFI	CTRYAG	5 cut(s)	456, 606, 693, 1010, 1131
BstUI	CGCG	1 cut(s)	10
BstV1I	GCAGC	4 cut(s)	101, 707, 1021, 1024
BstX2I	RGATCY	1 cut(s)	676
BstYI	RGATCY	1 cut(s)	676
BsuRI	GGCC	4 cut(s)	506, 845, 1003, 1008
BtgI	CCRYGG	1 cut(s)	929
BtsCI	GGATG	3 cut(s)	769, 1046, 1126
BtsIMutI	CAGTG	2 cut(s)	321, 758
BveI	ACCTGC	1 cut(s)	541
Cac8I	GCNNGC	3 cut(s)	444, 728, 1265
CfoI	GCGC	2 cut(s)	12, 105
Cfr13I	GGNCC	2 cut(s)	844, 926
CseI	GACGC	1 cut(s)	1142
Csp6I	GTAC	5 cut(s)	123, 753, 934, 1088, 1325
CviQI	GTAC	5 cut(s)	123, 753, 934, 1088, 1325
DdeI	CTNAG	5 cut(s)	93, 107, 191, 215, 1167
DinI	GGCGCC	1 cut(s)	104
DpnI	GATC	6 cut(s)	78, 158, 268, 572, 678, 1113
DpnII	GATC	6 cut(s)	76, 156, 266, 570, 676, 1111
EaeI	YGGCCR	1 cut(s)	504
Eam1104I	CTCTTC	3 cut(s)	41, 92, 1279
EarI	CTCTTC	3 cut(s)	41, 92, 1279
Eco130I	CCWWGG	2 cut(s)	501, 929
Eco47I	GGWCC	1 cut(s)	926
Eco57I	CTGAAG	1 cut(s)	606
EcoRII	CCWGG	1 cut(s)	1003
EcoT14I	CCWWGG	2 cut(s)	501, 929
EcoT22I	ATGCAT	5 cut(s)	142, 568, 1265, 1269, 1283
EgeI	GGCGCC	1 cut(s)	104
EheI	GGCGCC	1 cut(s)	104
ErhI	CCWWGG	2 cut(s)	501, 929
FaqI	GGGAC	1 cut(s)	791
FauNDI	CATATG	1 cut(s)	142
Fnu4HI	GCNGC	6 cut(s)	5, 8, 90, 696, 1035, 1038
FokI	GGATG	3 cut(s)	776, 1033, 1113
Fsp4HI	GCNGC	6 cut(s)	5, 8, 90, 696, 1035, 1038
GlaI	GCGC	2 cut(s)	11, 104
GluI	GCNGC	6 cut(s)	5, 8, 90, 696, 1035, 1038
GsaI	CCCAGC	2 cut(s)	88, 813
GsuI	CTGGAG	1 cut(s)	693
HaeII	RGCGCY	1 cut(s)	106
HaeIII	GGCC	4 cut(s)	506, 845, 1003, 1008
HapII	CCGG	1 cut(s)	1094
HgaI	GACGC	1 cut(s)	1142
HhaI	GCGC	2 cut(s)	12, 105
Hin1I	GRCGYC	1 cut(s)	103
Hin6I	GCGC	2 cut(s)	10, 103
HinP1I	GCGC	2 cut(s)	10, 103
HincII	GTYRAC	1 cut(s)	1173
HindII	GTYRAC	1 cut(s)	1173
HindIII	AAGCTT	1 cut(s)	236
HinfI	GANTC	7 cut(s)	209, 287, 388, 452, 689, 818, 1169
HpaII	CCGG	1 cut(s)	1094
HphI	GGTGA	2 cut(s)	196, 397
Hpy166II	GTNNAC	3 cut(s)	221, 1173, 1325
Hpy188I	TCNGA	5 cut(s)	76, 110, 355, 860, 1206
Hpy188III	TCNNGA	3 cut(s)	663, 1157, 1250
Hpy8I	GTNNAC	3 cut(s)	221, 1173, 1325
HpyAV	CCTTC	2 cut(s)	998, 1325
HpyCH4III	ACNGT	1 cut(s)	1055
HpyCH4IV	ACGT	1 cut(s)	703
HpyF10VI	GCNNNNNNNGC	2 cut(s)	178, 899
HpyF3I	CTNAG	5 cut(s)	93, 107, 191, 215, 1167
HpySE526I	ACGT	1 cut(s)	703
Hsp92I	GRCGYC	1 cut(s)	103
HspAI	GCGC	2 cut(s)	10, 103
KasI	GGCGCC	1 cut(s)	102
KpnI	GGTACC	1 cut(s)	937
Kzo9I	GATC	6 cut(s)	76, 156, 266, 570, 676, 1111
LguI	GCTCTTC	1 cut(s)	41
LmnI	GCTCC	2 cut(s)	653, 723
Lsp1109I	GCAGC	4 cut(s)	101, 707, 1021, 1024
LweI	GCATC	2 cut(s)	367, 1135
MaeII	ACGT	1 cut(s)	703
MaeIII	GTNAC	2 cut(s)	19, 314
MalI	GATC	6 cut(s)	78, 158, 268, 572, 678, 1113
MboI	GATC	6 cut(s)	76, 156, 266, 570, 676, 1111
MboII	GAAGA	7 cut(s)	28, 40, 43, 109, 1054, 1228, 1266
MflI	RGATCY	1 cut(s)	676
MluCI	AATT	8 cut(s)	229, 326, 358, 639, 716, 742, 1160, 1290
Mly113I	GGCGCC	1 cut(s)	103
MlyI	GAGTC	2 cut(s)	203, 1178
MmeI	TCCRAC	2 cut(s)	1003, 1089
Mph1103I	ATGCAT	5 cut(s)	142, 568, 1265, 1269, 1283
MseI	TTAA	3 cut(s)	578, 1256, 1330
MslI	CAYNNNNRTG	2 cut(s)	141, 410
MspI	CCGG	1 cut(s)	1094
MspR9I	CCNGG	1 cut(s)	1005
Mva1269I	GAATGC	1 cut(s)	536
MvaI	CCWGG	1 cut(s)	1005
MvnI	CGCG	1 cut(s)	10
MwoI	GCNNNNNNNGC	2 cut(s)	178, 899
NarI	GGCGCC	1 cut(s)	103
NcoI	CCATGG	1 cut(s)	929
NdeI	CATATG	1 cut(s)	142
NdeII	GATC	6 cut(s)	76, 156, 266, 570, 676, 1111
NlaIV	GGNNCC	2 cut(s)	104, 935
NmeAIII	GCCGAG	1 cut(s)	532
NmuCI	GTSAC	1 cut(s)	19
NsiI	ATGCAT	5 cut(s)	142, 568, 1265, 1269, 1283
NspI	RCATGY	2 cut(s)	730, 1267
PaeI	GCATGC	2 cut(s)	730, 1267
PciSI	GCTCTTC	1 cut(s)	41
PcsI	WCGNNNNNNNCGW	1 cut(s)	709
PctI	GAATGC	1 cut(s)	536
PfeI	GAWTC	5 cut(s)	287, 388, 452, 689, 818
PflFI	GACNNNGTC	1 cut(s)	924
PkrI	GCNGC	6 cut(s)	6, 9, 91, 697, 1036, 1039
PleI	GAGTC	2 cut(s)	203, 1177
PluTI	GGCGCC	1 cut(s)	106
PpsI	GAGTC	2 cut(s)	203, 1177
PsiI	TTATAA	1 cut(s)	483
Psp6I	CCWGG	1 cut(s)	1003
PspFI	CCCAGC	2 cut(s)	84, 809
PspGI	CCWGG	1 cut(s)	1003
PspN4I	GGNNCC	2 cut(s)	104, 935
PspPI	GGNCC	2 cut(s)	844, 926
PstI	CTGCAG	1 cut(s)	697
PsuI	RGATCY	1 cut(s)	676
PsyI	GACNNNGTC	1 cut(s)	924
RsaI	GTAC	5 cut(s)	124, 754, 935, 1089, 1326
RsaNI	GTAC	5 cut(s)	123, 753, 934, 1088, 1325
RseI	CAYNNNNRTG	2 cut(s)	141, 410
SapI	GCTCTTC	1 cut(s)	41
SaqAI	TTAA	3 cut(s)	578, 1256, 1330
SatI	GCNGC	6 cut(s)	5, 8, 90, 696, 1035, 1038
Sau3AI	GATC	6 cut(s)	76, 156, 266, 570, 676, 1111
Sau96I	GGNCC	2 cut(s)	844, 926
ScaI	AGTACT	1 cut(s)	1089
SchI	GAGTC	2 cut(s)	203, 1178
ScrFI	CCNGG	1 cut(s)	1005
SfaNI	GCATC	2 cut(s)	367, 1135
SfcI	CTRYAG	5 cut(s)	456, 606, 693, 1010, 1131
SfoI	GGCGCC	1 cut(s)	104
SinI	GGWCC	1 cut(s)	926
SmiMI	CAYNNNNRTG	2 cut(s)	141, 410
SphI	GCATGC	2 cut(s)	730, 1267
Sse9I	AATT	8 cut(s)	229, 326, 358, 639, 716, 742, 1160, 1290
SsiI	CCGC	3 cut(s)	8, 170, 730
SspDI	GGCGCC	1 cut(s)	102
SspI	AATATT	1 cut(s)	914
StyD4I	CCNGG	1 cut(s)	1003
StyI	CCWWGG	2 cut(s)	501, 929
TaaI	ACNGT	1 cut(s)	1055
TaiI	ACGT	1 cut(s)	706
TaqI	TCGA	1 cut(s)	62
TasI	AATT	8 cut(s)	229, 326, 358, 639, 716, 742, 1160, 1290
TatI	WGTACW	2 cut(s)	1087, 1324
TauI	GCSGC	1 cut(s)	10
TfiI	GAWTC	5 cut(s)	287, 388, 452, 689, 818
Tru1I	TTAA	3 cut(s)	578, 1256, 1330
Tru9I	TTAA	3 cut(s)	578, 1256, 1330
TscAI	CASTG	2 cut(s)	328, 765
TseFI	GTSAC	1 cut(s)	19
TseI	GCWGC	5 cut(s)	4, 89, 695, 1034, 1037
Tsp45I	GTSAC	1 cut(s)	19
TspDTI	ATGAA	8 cut(s)	34, 279, 783, 810, 875, 1228, 1266, 1298
TspGWI	ACGGA	2 cut(s)	110, 701
TspRI	CASTG	2 cut(s)	328, 765
Tth111I	GACNNNGTC	1 cut(s)	924
VpaK11BI	GGWCC	1 cut(s)	926
XapI	RAATTY	5 cut(s)	229, 326, 358, 742, 1160
XceI	RCATGY	2 cut(s)	730, 1267
ZrmI	AGTACT	1 cut(s)	1089
Zsp2I	ATGCAT	5 cut(s)	142, 568, 1265, 1269, 1283

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.