Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0005872

Physical Location & Seq

Genomic Coordinates Forward (+)

5539537 .. 5539990

Gene Structure 454 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00222510.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 429 bp

ATGCTTTACCATGCTTATGACAACTACATGATCCATGTGTTTCCGCATGATGAGCTAAAGCCTCTTATGAACTTGGAAAATCTGAAGCTTGAACACCTACCACAAGACTATAATGGATCAGCTCTTACACTTATTGATTCATTGTCCAGCCTTGTCATTATGGGTAACAACACCGAATTTGACGGTGCGGTTGTTTGGCTTTACGAAAATTTGACTTTTGATGTTGATGCGAGGGTGAATCTTTTTGAGTGCAACATAAGAGTGCTTGGAGGACTTGTTTCTGCTCATCCGCTTGCAATCGATTCTACGGACGGGTTGGGTCAAGGAGTTTATAAGAACCAACTGCTAACCTTGGCCGAGGATTTAGGGAAGCGTTTTCTACCGCATTCAACACACCCACGGGGTTGCCGTATGCATGGATCAACTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000139 GO:0003674 GO:0003824 GO:0004553 GO:0004559 GO:0004571 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005794 GO:0006491 GO:0006508 GO:0006511 GO:0006807 GO:0006950 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009100 GO:0009987 GO:0010033 GO:0010243 GO:0010498 GO:0012505 GO:0015923 GO:0015924 GO:0016020 GO:0016787 GO:0016798 GO:0019538 GO:0019941 GO:0030163 GO:0030433 GO:0031090 GO:0031984 GO:0033554 GO:0034976 GO:0036503 GO:0042221 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0051603 GO:0051716 GO:0071704 GO:0098588 GO:0098791 GO:1901135 GO:1901564 GO:1901565 GO:1901575 GO:1901698

KEGG Pathways

Metabolic & Signaling

ko04141 map04141

Pfam Domains

Protein Families

Glyco_hydro_47

Protein Analysis

142

Amino Acids

15.92

Weight (kDa)

5.3

Isoelectric Point (pI)

35.04

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_hydro_47	PF01532	1 - 135	4.2e-29	Glycosyl hydrolase family 47

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0005872)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G27520
fragaria_vesca	FvH4_5g16460 FvH4_5g16460 FvH4_5g16460 FvH4_5g16460 FvH4_5g16460 FvH4_5g16460 FvH4_5g16460 FvH4_5g16460
malus_domestica	MD14G1185600.v1.1
prunus_persica	Prupe.5G178500_v2.0.a1 Prupe.5G178500_v2.0.a1 Prupe.5G178500_v2.0.a1 Prupe.5G178500_v2.0.a1 Prupe.5G178500_v2.0.a1 Prupe.5G178500_v2.0.a1
pyrus_communis	pycom14g15450
rosa_chinensis	RchiOBHm_Chr7g0179631
rosa_laevigata	RLG00000005335
rosa_multiflora	Rmu_sc0005329.1_g000027
rosa_roxburghii	Rroxscaffold_3G00222510 Rroxscaffold_3G00273580
rosa_rugosa	Rorug06G0426800
rosa_samantha	Rh7AG026300 Rh7BG025400 Rh7CG027500 Rh7DG027100
rosa_wichuraiana	Rw7G002110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	333
AciI	CCGC	4 cut(s)	44, 188, 290, 383
AclWI	GGATC	3 cut(s)	25, 124, 427
AcoI	YGGCCR	1 cut(s)	354
AcsI	RAATTY	2 cut(s)	176, 208
AcuI	CTGAAG	1 cut(s)	104
AgsI	TTSAA	2 cut(s)	92, 390
AluBI	AGCT	3 cut(s)	55, 88, 122
AluI	AGCT	3 cut(s)	55, 88, 122
AlwI	GGATC	3 cut(s)	25, 124, 427
AoxI	GGCC	1 cut(s)	354
ApoI	RAATTY	2 cut(s)	176, 208
AsuHPI	GGTGA	1 cut(s)	247
BceAI	ACGGC	1 cut(s)	393
BmsI	GCATC	1 cut(s)	217
Bsa29I	ATCGAT	1 cut(s)	300
BsaJI	CCNNGG	3 cut(s)	351, 357, 398
BsaXI	ACNNNNNCTCC	2 cut(s)	261, 291
BseCI	ATCGAT	1 cut(s)	300
BseDI	CCNNGG	3 cut(s)	351, 357, 398
BseGI	GGATG	1 cut(s)	286
BshFI	GGCC	1 cut(s)	356
BshVI	ATCGAT	1 cut(s)	300
BsmI	GAATGC	1 cut(s)	385
BsnI	GGCC	1 cut(s)	356
Bsp143I	GATC	3 cut(s)	30, 116, 419
BspACI	CCGC	4 cut(s)	44, 188, 290, 383
BspANI	GGCC	1 cut(s)	356
BspDI	ATCGAT	1 cut(s)	300
BspPI	GGATC	3 cut(s)	25, 124, 427
BssECI	CCNNGG	3 cut(s)	351, 357, 398
BssMI	GATC	3 cut(s)	30, 116, 419
BssT1I	CCWWGG	1 cut(s)	351
Bst4CI	ACNGT	1 cut(s)	185
BstC8I	GCNNGC	1 cut(s)	294
BstDSI	CCRYGG	1 cut(s)	398
BstF5I	GGATG	1 cut(s)	286
BstKTI	GATC	3 cut(s)	33, 119, 422
BstMBI	GATC	3 cut(s)	30, 116, 419
BstMWI	GCNNNNNNNGC	1 cut(s)	52
Bsu15I	ATCGAT	1 cut(s)	300
BsuRI	GGCC	1 cut(s)	356
BsuTUI	ATCGAT	1 cut(s)	300
BtgI	CCRYGG	1 cut(s)	398
BtsCI	GGATG	1 cut(s)	286
Cac8I	GCNNGC	1 cut(s)	294
ClaI	ATCGAT	1 cut(s)	300
CviAII	CATG	5 cut(s)	11, 28, 35, 47, 416
CviJI	RGCY	7 cut(s)	55, 61, 88, 122, 150, 199, 356
CviKI_1	RGCY	7 cut(s)	55, 61, 88, 122, 150, 199, 356
DpnI	GATC	3 cut(s)	32, 118, 421
DpnII	GATC	3 cut(s)	30, 116, 419
EaeI	YGGCCR	1 cut(s)	354
Eco130I	CCWWGG	1 cut(s)	351
Eco57I	CTGAAG	1 cut(s)	104
EcoT14I	CCWWGG	1 cut(s)	351
EcoT22I	ATGCAT	1 cut(s)	417
ErhI	CCWWGG	1 cut(s)	351
FaeI	CATG	5 cut(s)	14, 31, 38, 50, 419
FatI	CATG	5 cut(s)	10, 27, 34, 46, 415
FokI	GGATG	1 cut(s)	273
HaeIII	GGCC	1 cut(s)	356
Hin1II	CATG	5 cut(s)	14, 31, 38, 50, 419
HindIII	AAGCTT	1 cut(s)	86
HinfI	GANTC	3 cut(s)	137, 238, 302
HphI	GGTGA	1 cut(s)	247
Hpy188I	TCNGA	1 cut(s)	84
HpyCH4III	ACNGT	1 cut(s)	185
HpyCH4V	TGCA	3 cut(s)	252, 296, 415
HpyF10VI	GCNNNNNNNGC	1 cut(s)	52
Hsp92II	CATG	5 cut(s)	14, 31, 38, 50, 419
Kzo9I	GATC	3 cut(s)	30, 116, 419
LpnPI	CCDG	1 cut(s)	160
LweI	GCATC	1 cut(s)	217
MaeIII	GTNAC	1 cut(s)	164
MalI	GATC	3 cut(s)	32, 118, 421
MboI	GATC	3 cut(s)	30, 116, 419
MluCI	AATT	2 cut(s)	176, 208
MnlI	CCTC	4 cut(s)	72, 225, 263, 352
Mph1103I	ATGCAT	1 cut(s)	417
MseI	TTAA	1 cut(s)	427
MslI	CAYNNNNRTG	2 cut(s)	15, 260
Mva1269I	GAATGC	1 cut(s)	385
MwoI	GCNNNNNNNGC	1 cut(s)	52
NdeII	GATC	3 cut(s)	30, 116, 419
NlaIII	CATG	5 cut(s)	14, 31, 38, 50, 419
NmeAIII	GCCGAG	1 cut(s)	382
NsiI	ATGCAT	1 cut(s)	417
PcsI	WCGNNNNNNNCGW	1 cut(s)	406
PctI	GAATGC	1 cut(s)	385
PfeI	GAWTC	3 cut(s)	137, 238, 302
PsiI	TTATAA	1 cut(s)	333
RseI	CAYNNNNRTG	2 cut(s)	15, 260
SaqAI	TTAA	1 cut(s)	427
Sau3AI	GATC	3 cut(s)	30, 116, 419
SetI	ASST	5 cut(s)	57, 90, 99, 124, 353
SfaNI	GCATC	1 cut(s)	217
SmiMI	CAYNNNNRTG	2 cut(s)	15, 260
Sse9I	AATT	2 cut(s)	176, 208
SsiI	CCGC	4 cut(s)	44, 188, 290, 383
StyI	CCWWGG	1 cut(s)	351
TaaI	ACNGT	1 cut(s)	185
TaqI	TCGA	1 cut(s)	300
TasI	AATT	2 cut(s)	176, 208
TfiI	GAWTC	3 cut(s)	137, 238, 302
Tru1I	TTAA	1 cut(s)	427
Tru9I	TTAA	1 cut(s)	427
TspDTI	ATGAA	2 cut(s)	83, 129
TspGWI	ACGGA	1 cut(s)	323
XapI	RAATTY	2 cut(s)	176, 208
Zsp2I	ATGCAT	1 cut(s)	417

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.