Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7A

Orthogroup ID

OG0005872

Physical Location & Seq

Genomic Coordinates Reverse (-)

1750787 .. 1755304

Gene Structure 4518 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7AG026300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1221 bp

ATGTTGCCGCGCAAATCTGTGACATGGGTTCTGCTCTTCTTGTTCATCTTCTTCAACTTATCGACTTCCCAATCCGATCCTCGCTGGGCAGCTAAGAAGAGACGCCTCAGAAATAAAGTCCGTACCATGTTTTACCATGCATATGACAACTACATGATCCATGCGTTTCCGCATGATGAGCTAAAGCCTCTTAGTAAAAGTTTCACCGACTCTCTTAGTGAACTTGGAAATTTGAAGCTTGAACACCTACCACAAGACTATAATGGATCAGCTCTTACACTTATTGATTCATTGTCCAGCCTTGTCATTATGGGTAACAACACTGAATTTGAAAGTGCAGTTGTTTGGCTTTCTGAAAATTTGACTTTTGATGTTGATGCGAGGGTGAATCTTTTTGAGTGCAACATAAGAGTGCTTGGAGGACTTGTTTCTGCTCATCTGCTTGCGACTGATTCTACAGACAGGTTGGGTCAAGGAGTTTATAAGAACCAACTGCTAACCTTGGCCGAGGATTTAGGGAAGCGTTTTCTACCTGCATTCAACACACCCACAGGGTTGCCGTATGCATGGATCAACTTAAAGTATGGAGTGGTGGAGAATGAGACTACAGAAACAAGCACTTCAGGGTGTGGTTCTCTAATTTTGGAAATGGGAGCATTATCCCGATTGACTGGAGATCCCAAATACGAATCTGCAGCTTTACGTTCTCTCCGTAAATTGTGGAGCATGCGGAGTTCGTTGAATTTACTTGGTACGACACTGGATGTATCAACTGGGGACTGGATTGAGTATTCATCTGGGATTGGGGCTGGGGTTGATTCATTTTATGAGTATCTCTACAAGGCCCACATTCTTTTCGGAAAGGAGGAATTTTGGAGAATGTTTCATTCTGCTTATATTGCTGTGCAGAAATATTTTAGACATGGTCCATGGTACCATGAAGCTGATATGAGGACAGGAAAAGCAACTTATTGGCAACTTACAAGCCTTCAAGCATTTTGGCCTGGCCTACAGGTTCTTGTTGGAGACATTGCTGCTGCAAACTCATCCCACCGTGAGTTCTTCTATGTATGGAATAAGTTTGGAGTACTACCGGAGAGGTATTCTGATATTTGTAGAATTGTTTTTCATATACTTGCTACTCTTGCATGCTGTTGTGACCGATGGTTCTTTAAAATTTTTGATGGTTCGTTTCTATTGTTGCAGTATTTCTTTTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000139 GO:0003674 GO:0003824 GO:0004553 GO:0004559 GO:0004571 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005794 GO:0006491 GO:0006508 GO:0006511 GO:0006807 GO:0006950 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009100 GO:0009987 GO:0010033 GO:0010243 GO:0010498 GO:0012505 GO:0015923 GO:0015924 GO:0016020 GO:0016787 GO:0016798 GO:0019538 GO:0019941 GO:0030163 GO:0030433 GO:0031090 GO:0031984 GO:0033554 GO:0034976 GO:0036503 GO:0042221 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0051603 GO:0051716 GO:0071704 GO:0098588 GO:0098791 GO:1901135 GO:1901564 GO:1901565 GO:1901575 GO:1901698

KEGG Pathways

Metabolic & Signaling

ko04141 map04141

Pfam Domains

Protein Families

Glyco_hydro_47

Protein Analysis

406

Amino Acids

46.46

Weight (kDa)

6.83

Isoelectric Point (pI)

42.91

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_hydro_47	PF01532	43 - 368	4.2e-76	Glycosyl hydrolase family 47

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005872)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G27520
fragaria_vesca	FvH4_5g16460 FvH4_5g16460 FvH4_5g16460 FvH4_5g16460 FvH4_5g16460 FvH4_5g16460 FvH4_5g16460 FvH4_5g16460
malus_domestica	MD14G1185600.v1.1
prunus_persica	Prupe.5G178500_v2.0.a1 Prupe.5G178500_v2.0.a1 Prupe.5G178500_v2.0.a1 Prupe.5G178500_v2.0.a1 Prupe.5G178500_v2.0.a1 Prupe.5G178500_v2.0.a1
pyrus_communis	pycom14g15450
rosa_chinensis	RchiOBHm_Chr7g0179631
rosa_laevigata	RLG00000005335
rosa_multiflora	Rmu_sc0005329.1_g000027
rosa_roxburghii	Rroxscaffold_3G00222510 Rroxscaffold_3G00273580
rosa_rugosa	Rorug06G0426800
rosa_samantha	Rh7AG026300 Rh7BG025400 Rh7CG027500 Rh7DG027100
rosa_wichuraiana	Rw7G002110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	483
Acc36I	ACCTGC	1 cut(s)	541
Acc65I	GGTACC	1 cut(s)	933
AccB1I	GGYRCC	1 cut(s)	933
AccII	CGCG	1 cut(s)	10
AciI	CCGC	3 cut(s)	8, 170, 730
AclWI	GGATC	5 cut(s)	71, 151, 274, 578, 671
AcoI	YGGCCR	1 cut(s)	504
AcsI	RAATTY	6 cut(s)	229, 326, 358, 742, 869, 1176
AcuI	CTGAAG	1 cut(s)	606
AcyI	GRCGYC	1 cut(s)	103
AfaI	GTAC	4 cut(s)	124, 754, 935, 1089
AgsI	TTSAA	7 cut(s)	55, 235, 242, 332, 541, 742, 992
AjnI	CCWGG	1 cut(s)	1003
AluBI	AGCT	6 cut(s)	92, 181, 238, 272, 698, 944
AluI	AGCT	6 cut(s)	92, 181, 238, 272, 698, 944
Alw26I	GTCTC	3 cut(s)	94, 596, 1020
AlwI	GGATC	5 cut(s)	71, 151, 274, 578, 671
AoxI	GGCC	4 cut(s)	504, 843, 1001, 1006
ApeKI	GCWGC	4 cut(s)	89, 695, 1034, 1037
ApoI	RAATTY	6 cut(s)	229, 326, 358, 742, 869, 1176
Asp718I	GGTACC	1 cut(s)	933
AspLEI	GCGC	1 cut(s)	12
AspS9I	GGNCC	2 cut(s)	844, 926
AsuHPI	GGTGA	2 cut(s)	196, 397
AvaII	GGWCC	1 cut(s)	926
BanI	GGYRCC	1 cut(s)	933
BbvI	GCAGC	4 cut(s)	101, 707, 1021, 1024
BccI	CCATC	2 cut(s)	1158, 1178
BceAI	ACGGC	1 cut(s)	544
BciT130I	CCWGG	1 cut(s)	1005
BcoDI	GTCTC	3 cut(s)	94, 596, 1020
BfmI	CTRYAG	4 cut(s)	456, 606, 693, 1010
BfuAI	ACCTGC	1 cut(s)	541
BisI	GCNGC	5 cut(s)	8, 90, 696, 1035, 1038
BlsI	GCNGC	5 cut(s)	9, 91, 697, 1036, 1039
BmcAI	AGTACT	1 cut(s)	1089
Bme1390I	CCNGG	1 cut(s)	1005
Bme18I	GGWCC	1 cut(s)	926
BmgT120I	GGNCC	2 cut(s)	844, 926
BmiI	GGNNCC	1 cut(s)	935
BmrFI	CCNGG	1 cut(s)	1005
BmrI	ACTGGG	1 cut(s)	783
BmsI	GCATC	1 cut(s)	367
BmuI	ACTGGG	1 cut(s)	783
BpmI	CTGGAG	1 cut(s)	693
BsaHI	GRCGYC	1 cut(s)	103
BsaJI	CCNNGG	3 cut(s)	501, 507, 929
BsaWI	WCCGGW	1 cut(s)	1093
BsaXI	ACNNNNNCTCC	4 cut(s)	411, 441, 693, 723
Bse1I	ACTGG	4 cut(s)	676, 765, 778, 785
Bse3DI	GCAATG	1 cut(s)	1029
BseBI	CCWGG	1 cut(s)	1005
BseDI	CCNNGG	3 cut(s)	501, 507, 929
BseGI	GGATG	2 cut(s)	769, 1046
BseMI	GCAATG	1 cut(s)	1029
BseMII	CTCAG	1 cut(s)	121
BseNI	ACTGG	4 cut(s)	676, 765, 778, 785
BseXI	GCAGC	4 cut(s)	101, 707, 1021, 1024
BseYI	CCCAGC	2 cut(s)	84, 809
BsgI	GTGCAG	2 cut(s)	357, 926
Bsh1236I	CGCG	1 cut(s)	10
BshFI	GGCC	4 cut(s)	506, 845, 1003, 1008
BshNI	GGYRCC	1 cut(s)	933
BsiSI	CCGG	1 cut(s)	1094
BslFI	GGGAC	1 cut(s)	791
BsmAI	GTCTC	3 cut(s)	94, 596, 1020
BsmBI	CGTCTC	1 cut(s)	94
BsmFI	GGGAC	1 cut(s)	791
BsmI	GAATGC	1 cut(s)	536
BsnI	GGCC	4 cut(s)	506, 845, 1003, 1008
Bsp143I	GATC	5 cut(s)	76, 156, 266, 570, 676
Bsp19I	CCATGG	1 cut(s)	929
BspACI	CCGC	3 cut(s)	8, 170, 730
BspANI	GGCC	4 cut(s)	506, 845, 1003, 1008
BspCNI	CTCAG	1 cut(s)	120
BspFNI	CGCG	1 cut(s)	10
BspLI	GGNNCC	1 cut(s)	935
BspMAI	CTGCAG	1 cut(s)	697
BspMI	ACCTGC	1 cut(s)	541
BspPI	GGATC	5 cut(s)	71, 151, 274, 578, 671
BspQI	GCTCTTC	1 cut(s)	41
BspT107I	GGYRCC	1 cut(s)	933
BsrDI	GCAATG	1 cut(s)	1029
BsrI	ACTGG	4 cut(s)	676, 765, 778, 785
BssECI	CCNNGG	3 cut(s)	501, 507, 929
BssMI	GATC	5 cut(s)	76, 156, 266, 570, 676
BssNI	GRCGYC	1 cut(s)	103
BssT1I	CCWWGG	2 cut(s)	501, 929
Bst2UI	CCWGG	1 cut(s)	1005
Bst4CI	ACNGT	1 cut(s)	1055
Bst6I	CTCTTC	2 cut(s)	41, 92
BstACI	GRCGYC	1 cut(s)	103
BstC8I	GCNNGC	3 cut(s)	444, 728, 1150
BstDEI	CTNAG	4 cut(s)	93, 107, 191, 215
BstDSI	CCRYGG	1 cut(s)	929
BstF5I	GGATG	2 cut(s)	769, 1046
BstFNI	CGCG	1 cut(s)	10
BstHHI	GCGC	1 cut(s)	12
BstKTI	GATC	5 cut(s)	79, 159, 269, 573, 679
BstMAI	GTCTC	3 cut(s)	94, 596, 1020
BstMBI	GATC	5 cut(s)	76, 156, 266, 570, 676
BstMWI	GCNNNNNNNGC	3 cut(s)	178, 899, 1145
BstNI	CCWGG	1 cut(s)	1005
BstNSI	RCATGY	2 cut(s)	730, 1152
BstSCI	CCNGG	1 cut(s)	1003
BstSFI	CTRYAG	4 cut(s)	456, 606, 693, 1010
BstUI	CGCG	1 cut(s)	10
BstV1I	GCAGC	4 cut(s)	101, 707, 1021, 1024
BstX2I	RGATCY	1 cut(s)	676
BstYI	RGATCY	1 cut(s)	676
BsuRI	GGCC	4 cut(s)	506, 845, 1003, 1008
BtgI	CCRYGG	1 cut(s)	929
BtsCI	GGATG	2 cut(s)	769, 1046
BtsIMutI	CAGTG	2 cut(s)	321, 758
BveI	ACCTGC	1 cut(s)	541
Cac8I	GCNNGC	3 cut(s)	444, 728, 1150
CfoI	GCGC	1 cut(s)	12
Cfr13I	GGNCC	2 cut(s)	844, 926
CseI	GACGC	1 cut(s)	111
Csp6I	GTAC	4 cut(s)	123, 753, 934, 1088
CviQI	GTAC	4 cut(s)	123, 753, 934, 1088
DdeI	CTNAG	4 cut(s)	93, 107, 191, 215
DpnI	GATC	5 cut(s)	78, 158, 268, 572, 678
DpnII	GATC	5 cut(s)	76, 156, 266, 570, 676
DraI	TTTAAA	1 cut(s)	1174
EaeI	YGGCCR	1 cut(s)	504
Eam1104I	CTCTTC	2 cut(s)	41, 92
EarI	CTCTTC	2 cut(s)	41, 92
Eco130I	CCWWGG	2 cut(s)	501, 929
Eco47I	GGWCC	1 cut(s)	926
Eco57I	CTGAAG	1 cut(s)	606
EcoRII	CCWGG	1 cut(s)	1003
EcoT14I	CCWWGG	2 cut(s)	501, 929
EcoT22I	ATGCAT	2 cut(s)	142, 568
ErhI	CCWWGG	2 cut(s)	501, 929
Esp3I	CGTCTC	1 cut(s)	94
FaqI	GGGAC	1 cut(s)	791
FauNDI	CATATG	1 cut(s)	142
Fnu4HI	GCNGC	5 cut(s)	8, 90, 696, 1035, 1038
FokI	GGATG	2 cut(s)	776, 1033
Fsp4HI	GCNGC	5 cut(s)	8, 90, 696, 1035, 1038
GlaI	GCGC	1 cut(s)	11
GluI	GCNGC	5 cut(s)	8, 90, 696, 1035, 1038
GsaI	CCCAGC	2 cut(s)	88, 813
GsuI	CTGGAG	1 cut(s)	693
HaeIII	GGCC	4 cut(s)	506, 845, 1003, 1008
HapII	CCGG	1 cut(s)	1094
HgaI	GACGC	1 cut(s)	111
HhaI	GCGC	1 cut(s)	12
Hin1I	GRCGYC	1 cut(s)	103
Hin6I	GCGC	1 cut(s)	10
HinP1I	GCGC	1 cut(s)	10
HindIII	AAGCTT	1 cut(s)	236
HinfI	GANTC	6 cut(s)	209, 287, 388, 452, 689, 818
HpaII	CCGG	1 cut(s)	1094
HphI	GGTGA	2 cut(s)	196, 397
Hpy166II	GTNNAC	1 cut(s)	221
Hpy188I	TCNGA	5 cut(s)	76, 110, 355, 860, 1108
Hpy188III	TCNNGA	2 cut(s)	663, 1218
Hpy8I	GTNNAC	1 cut(s)	221
HpyAV	CCTTC	1 cut(s)	998
HpyCH4III	ACNGT	1 cut(s)	1055
HpyCH4IV	ACGT	1 cut(s)	703
HpyF10VI	GCNNNNNNNGC	3 cut(s)	178, 899, 1145
HpyF3I	CTNAG	4 cut(s)	93, 107, 191, 215
HpySE526I	ACGT	1 cut(s)	703
Hsp92I	GRCGYC	1 cut(s)	103
HspAI	GCGC	1 cut(s)	10
KpnI	GGTACC	1 cut(s)	937
Kzo9I	GATC	5 cut(s)	76, 156, 266, 570, 676
LguI	GCTCTTC	1 cut(s)	41
LmnI	GCTCC	2 cut(s)	653, 723
Lsp1109I	GCAGC	4 cut(s)	101, 707, 1021, 1024
LweI	GCATC	1 cut(s)	367
MaeII	ACGT	1 cut(s)	703
MaeIII	GTNAC	3 cut(s)	19, 314, 1157
MalI	GATC	5 cut(s)	78, 158, 268, 572, 678
MboI	GATC	5 cut(s)	76, 156, 266, 570, 676
MboII	GAAGA	5 cut(s)	28, 40, 43, 109, 1054
MflI	RGATCY	1 cut(s)	676
MluCI	AATT	9 cut(s)	229, 326, 358, 639, 716, 742, 869, 1119, 1176
MlyI	GAGTC	1 cut(s)	203
MmeI	TCCRAC	1 cut(s)	1003
MnlI	CCTC	9 cut(s)	90, 116, 198, 375, 413, 502, 859, 945, 1092
Mph1103I	ATGCAT	2 cut(s)	142, 568
MseI	TTAA	2 cut(s)	578, 1173
MslI	CAYNNNNRTG	2 cut(s)	141, 410
MspI	CCGG	1 cut(s)	1094
MspR9I	CCNGG	1 cut(s)	1005
Mva1269I	GAATGC	1 cut(s)	536
MvaI	CCWGG	1 cut(s)	1005
MvnI	CGCG	1 cut(s)	10
MwoI	GCNNNNNNNGC	3 cut(s)	178, 899, 1145
NcoI	CCATGG	1 cut(s)	929
NdeI	CATATG	1 cut(s)	142
NdeII	GATC	5 cut(s)	76, 156, 266, 570, 676
NlaIV	GGNNCC	1 cut(s)	935
NmeAIII	GCCGAG	1 cut(s)	532
NmuCI	GTSAC	2 cut(s)	19, 1157
NsiI	ATGCAT	2 cut(s)	142, 568
NspI	RCATGY	2 cut(s)	730, 1152
PaeI	GCATGC	2 cut(s)	730, 1152
PciSI	GCTCTTC	1 cut(s)	41
PcsI	WCGNNNNNNNCGW	1 cut(s)	709
PctI	GAATGC	1 cut(s)	536
PfeI	GAWTC	5 cut(s)	287, 388, 452, 689, 818
PflFI	GACNNNGTC	1 cut(s)	924
PkrI	GCNGC	5 cut(s)	9, 91, 697, 1036, 1039
PleI	GAGTC	1 cut(s)	203
PpsI	GAGTC	1 cut(s)	203
PsiI	TTATAA	1 cut(s)	483
Psp6I	CCWGG	1 cut(s)	1003
PspFI	CCCAGC	2 cut(s)	84, 809
PspGI	CCWGG	1 cut(s)	1003
PspN4I	GGNNCC	1 cut(s)	935
PspPI	GGNCC	2 cut(s)	844, 926
PstI	CTGCAG	1 cut(s)	697
PsuI	RGATCY	1 cut(s)	676
PsyI	GACNNNGTC	1 cut(s)	924
RsaI	GTAC	4 cut(s)	124, 754, 935, 1089
RsaNI	GTAC	4 cut(s)	123, 753, 934, 1088
RseI	CAYNNNNRTG	2 cut(s)	141, 410
SapI	GCTCTTC	1 cut(s)	41
SaqAI	TTAA	2 cut(s)	578, 1173
SatI	GCNGC	5 cut(s)	8, 90, 696, 1035, 1038
Sau3AI	GATC	5 cut(s)	76, 156, 266, 570, 676
Sau96I	GGNCC	2 cut(s)	844, 926
ScaI	AGTACT	1 cut(s)	1089
SchI	GAGTC	1 cut(s)	203
ScrFI	CCNGG	1 cut(s)	1005
SfaNI	GCATC	1 cut(s)	367
SfcI	CTRYAG	4 cut(s)	456, 606, 693, 1010
SinI	GGWCC	1 cut(s)	926
SmiMI	CAYNNNNRTG	2 cut(s)	141, 410
SphI	GCATGC	2 cut(s)	730, 1152
Sse9I	AATT	9 cut(s)	229, 326, 358, 639, 716, 742, 869, 1119, 1176
SsiI	CCGC	3 cut(s)	8, 170, 730
SspI	AATATT	1 cut(s)	914
StyD4I	CCNGG	1 cut(s)	1003
StyI	CCWWGG	2 cut(s)	501, 929
TaaI	ACNGT	1 cut(s)	1055
TaiI	ACGT	1 cut(s)	706
TaqI	TCGA	1 cut(s)	62
TaqII	GACCGA	1 cut(s)	1176
TasI	AATT	9 cut(s)	229, 326, 358, 639, 716, 742, 869, 1119, 1176
TatI	WGTACW	1 cut(s)	1087
TauI	GCSGC	1 cut(s)	10
TfiI	GAWTC	5 cut(s)	287, 388, 452, 689, 818
Tru1I	TTAA	2 cut(s)	578, 1173
Tru9I	TTAA	2 cut(s)	578, 1173
TscAI	CASTG	2 cut(s)	328, 765
TseFI	GTSAC	2 cut(s)	19, 1157
TseI	GCWGC	4 cut(s)	89, 695, 1034, 1037
Tsp45I	GTSAC	2 cut(s)	19, 1157
TspDTI	ATGAA	7 cut(s)	34, 279, 783, 810, 875, 954, 1118
TspGWI	ACGGA	2 cut(s)	110, 701
TspRI	CASTG	2 cut(s)	328, 765
Tth111I	GACNNNGTC	1 cut(s)	924
VpaK11BI	GGWCC	1 cut(s)	926
XapI	RAATTY	6 cut(s)	229, 326, 358, 742, 869, 1176
XceI	RCATGY	2 cut(s)	730, 1152
ZrmI	AGTACT	1 cut(s)	1089
Zsp2I	ATGCAT	2 cut(s)	142, 568

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.