RchiOBHm_Chr7g0182491

heparanase-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0004478
Physical Location & Seq
Forward (+)
3704076 .. 3707409
3334 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ16280

Sequence Viewer

Length: 1062 bp
ATGGAACTCTGTGTCCCTTTGATTCTCTTTCCAATTTCTCTGCCGGCATTTTTGGCCAAAGATGTCGGACATGCTAGCGTTGTAGTTGATGGGACAGTAGCTACTGCACACATTGATAACAATTTTGTCTGTGCCACTCTTGATTGGTGGAATCATGAAAAGTGCGACTACAACCACTGTCCTTGGGGATCTGCATCTGTGTTAAATTTGAACTTGTCTCGTCCTCTTCTTGCCAAGTCAATTCAAGCTTTCAATCAGTTGAGGATCAGAATTGGGGGTTCCTTGCAAGATCAAGTATTGTATGGTGTAGAAGATTTGAAATATCCTTGCCATCCTTTCAGAAAGCAGAAGGGTGGGTTGTTTGGATTTTCTACAGGATGTTTACCTATGAGTAGATGGGATGAGCTTAACCATTTTTTCAGTAAGACAAGGCCCCTTGTCACATTTAGCTTGAATGCATTGTCAGGGAGGCACCACAAAGGCGCGGGTGTTTGGGTTGGAGATTGGGACTCTAGCAATGCTTATGATTTTATTAATTATACAGTTTCGAAGGGCTACCAGATAAATTCATGGGAGTTGGATATGATTATGAAAAGATATGAACATCTTTCTTGCCGCTTGTTTTGTTTTTGCTTCACATATATTCTTGTCTATCTTGGTGTAGGTAATGAGCTCTGTGGTAATGGTGTTGAAGCTAGAGTTGGAGCTGAACAGTATGGAAAAGACATGATGAAGCTTAAACAAATTGTCAACCAGTTGTACAATGACTCCCATATAAAGCCTGCAATTGTAAGACCTGGAGGATTCTATGATCAAAAGTGGTTTGCCAGGCTTCTTCAGGTTTCTGGTTCAGGCGTAGTCAATGTTGTCACTCAGCATCTTTACAATCTGGGTCCAGGTGTTGATCCCAAGTTGATGCAAATGATATTGGATCAATGTTACTTGGACCATATATCTGGTACATTCGATAATCTTGCAGCAACAGTGAAACAGCACGGACCTTGGGCTTCTATTTGGGTTGGAGAGTCTGGAGGAGCCTATAACAGCGGTGAATGTATCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00531 ko01100 ko05205 map00531 map01100 map05205
Pfam Domains
Protein Families
Glyco_hydro_79n

Protein Analysis

353

Amino Acids

39.52

Weight (kDa)

6.87

Isoelectric Point (pI)

29.85

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_hydro_79n PF03662 25 - 193 9.6e-79 Glycosyl hydrolase family 79, N-terminal domain
Glyco_hydro_79n PF03662 219 - 351 1.8e-53 Glycosyl hydrolase family 79, N-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 471
AccII CGCG 1 cut(s) 485
AciI CCGC 3 cut(s) 485, 616, 1047
AclWI GGATC 4 cut(s) 196, 272, 899, 939
AcoI YGGCCR 1 cut(s) 54
AcsI RAATTY 2 cut(s) 205, 565
AcuI CTGAAG 1 cut(s) 821
AfaI GTAC 2 cut(s) 761, 961
AgsI TTSAA 6 cut(s) 211, 245, 253, 319, 454, 692
AjnI CCWGG 3 cut(s) 796, 827, 895
AjuI GAANNNNNNNTTGG 2 cut(s) 684, 716
AloI GAACNNNNNNTCC 1 cut(s) 29
AluBI AGCT 8 cut(s) 101, 248, 406, 450, 673, 695, 707, 736
AluI AGCT 8 cut(s) 101, 248, 406, 450, 673, 695, 707, 736
Alw21I GWGCWC 1 cut(s) 675
Alw26I GTCTC 1 cut(s) 222
AlwI GGATC 4 cut(s) 196, 272, 899, 939
AoxI GGCC 2 cut(s) 54, 431
ApeKI GCWGC 1 cut(s) 977
ApoI RAATTY 2 cut(s) 205, 565
AseI ATTAAT 1 cut(s) 534
AspLEI GCGC 1 cut(s) 485
AspS9I GGNCC 4 cut(s) 432, 893, 946, 998
AsuHPI GGTGA 1 cut(s) 1061
AsuII TTCGAA 1 cut(s) 548
AsuNHI GCTAGC 1 cut(s) 74
AvaII GGWCC 3 cut(s) 893, 946, 998
BalI TGGCCA 1 cut(s) 56
BanI GGYRCC 1 cut(s) 471
BanII GRGCYC 1 cut(s) 675
Bbv12I GWGCWC 1 cut(s) 675
BbvI GCAGC 1 cut(s) 989
BccI CCATC 3 cut(s) 83, 339, 390
BcgI CGANNNNNNTGC 2 cut(s) 956, 990
BciT130I CCWGG 3 cut(s) 798, 829, 897
BclI TGATCA 1 cut(s) 811
BcoDI GTCTC 1 cut(s) 222
BfaI CTAG 3 cut(s) 75, 513, 696
BfmI CTRYAG 1 cut(s) 372
BisI GCNGC 2 cut(s) 616, 978
BlsI GCNGC 2 cut(s) 617, 979
Bme1390I CCNGG 3 cut(s) 798, 829, 897
Bme18I GGWCC 3 cut(s) 893, 946, 998
BmgT120I GGNCC 4 cut(s) 432, 893, 946, 998
BmiI GGNNCC 5 cut(s) 280, 434, 473, 894, 1036
BmrFI CCNGG 3 cut(s) 798, 829, 897
BmsI GCATC 3 cut(s) 203, 886, 906
BmtI GCTAGC 1 cut(s) 78
BpmI CTGGAG 2 cut(s) 819, 1050
Bpu14I TTCGAA 1 cut(s) 548
BsaBI GATNNNNATC 1 cut(s) 193
BsaJI CCNNGG 2 cut(s) 182, 1001
BsaXI ACNNNNNCTCC 2 cut(s) 752, 782
Bse118I RCCGGY 1 cut(s) 43
Bse1I ACTGG 1 cut(s) 754
Bse3DI GCAATG 1 cut(s) 523
Bse8I GATNNNNATC 1 cut(s) 193
BseBI CCWGG 3 cut(s) 798, 829, 897
BseDI CCNNGG 2 cut(s) 182, 1001
BseGI GGATG 3 cut(s) 331, 383, 406
BseJI GATNNNNATC 1 cut(s) 193
BseMI GCAATG 1 cut(s) 523
BseMII CTCAG 1 cut(s) 887
BseNI ACTGG 1 cut(s) 754
BseRI GAGGAG 1 cut(s) 1047
BseXI GCAGC 1 cut(s) 989
BsgI GTGCAG 1 cut(s) 90
Bsh1236I CGCG 1 cut(s) 485
BshFI GGCC 2 cut(s) 56, 433
BshNI GGYRCC 1 cut(s) 471
BsiHKAI GWGCWC 1 cut(s) 675
BsiSI CCGG 1 cut(s) 44
BslFI GGGAC 2 cut(s) 106, 521
BsmAI GTCTC 1 cut(s) 222
BsmFI GGGAC 2 cut(s) 106, 521
BsmI GAATGC 1 cut(s) 460
BsnI GGCC 2 cut(s) 56, 433
Bsp119I TTCGAA 1 cut(s) 548
Bsp1286I GDGCHC 1 cut(s) 675
Bsp1407I TGTACA 1 cut(s) 759
Bsp143I GATC 6 cut(s) 188, 264, 289, 811, 904, 931
BspACI CCGC 3 cut(s) 485, 616, 1047
BspANI GGCC 2 cut(s) 56, 433
BspCNI CTCAG 1 cut(s) 886
BspFNI CGCG 1 cut(s) 485
BspHI TCATGA 1 cut(s) 154
BspLI GGNNCC 5 cut(s) 280, 434, 473, 894, 1036
BspOI GCTAGC 1 cut(s) 78
BspPI GGATC 4 cut(s) 196, 272, 899, 939
BspT104I TTCGAA 1 cut(s) 548
BspT107I GGYRCC 1 cut(s) 471
BsrDI GCAATG 1 cut(s) 523
BsrFI RCCGGY 1 cut(s) 43
BsrGI TGTACA 1 cut(s) 759
BsrI ACTGG 1 cut(s) 754
BssAI RCCGGY 1 cut(s) 43
BssECI CCNNGG 2 cut(s) 182, 1001
BssMI GATC 6 cut(s) 188, 264, 289, 811, 904, 931
BssT1I CCWWGG 2 cut(s) 182, 1001
Bst2UI CCWGG 3 cut(s) 798, 829, 897
Bst4CI ACNGT 5 cut(s) 97, 179, 544, 714, 985
Bst6I CTCTTC 1 cut(s) 231
BstAUI TGTACA 1 cut(s) 759
BstBI TTCGAA 1 cut(s) 548
BstC8I GCNNGC 3 cut(s) 45, 76, 783
BstDEI CTNAG 1 cut(s) 873
BstF5I GGATG 3 cut(s) 331, 383, 406
BstFNI CGCG 1 cut(s) 485
BstHHI GCGC 1 cut(s) 485
BstKTI GATC 6 cut(s) 191, 267, 292, 814, 907, 934
BstMAI GTCTC 1 cut(s) 222
BstMBI GATC 6 cut(s) 188, 264, 289, 811, 904, 931
BstMWI GCNNNNNNNGC 1 cut(s) 53
BstNI CCWGG 3 cut(s) 798, 829, 897
BstNSI RCATGY 1 cut(s) 74
BstSCI CCNGG 3 cut(s) 796, 827, 895
BstSFI CTRYAG 1 cut(s) 372
BstUI CGCG 1 cut(s) 485
BstV1I GCAGC 1 cut(s) 989
BstX2I RGATCY 1 cut(s) 188
BstXI CCANNNNNNTGG 1 cut(s) 956
BstYI RGATCY 1 cut(s) 188
BsuRI GGCC 2 cut(s) 56, 433
BtsCI GGATG 3 cut(s) 331, 383, 406
BtsIMutI CAGTG 2 cut(s) 175, 990
Cac8I GCNNGC 3 cut(s) 45, 76, 783
CciI TCATGA 1 cut(s) 154
CfoI GCGC 1 cut(s) 485
Cfr10I RCCGGY 1 cut(s) 43
Cfr13I GGNCC 4 cut(s) 432, 893, 946, 998
Csp6I GTAC 2 cut(s) 760, 960
CspCI CAANNNNNGTGG 2 cut(s) 164, 199
CviAII CATG 4 cut(s) 71, 155, 570, 727
CviQI GTAC 2 cut(s) 760, 960
DdeI CTNAG 1 cut(s) 873
DpnI GATC 6 cut(s) 190, 266, 291, 813, 906, 933
DpnII GATC 6 cut(s) 188, 264, 289, 811, 904, 931
EaeI YGGCCR 1 cut(s) 54
Eam1104I CTCTTC 1 cut(s) 231
EarI CTCTTC 1 cut(s) 231
Ecl136II GAGCTC 1 cut(s) 673
Eco130I CCWWGG 2 cut(s) 182, 1001
Eco24I GRGCYC 1 cut(s) 675
Eco47I GGWCC 3 cut(s) 893, 946, 998
Eco53kI GAGCTC 1 cut(s) 673
Eco57I CTGAAG 1 cut(s) 821
EcoICRI GAGCTC 1 cut(s) 673
EcoO109I RGGNCCY 1 cut(s) 432
EcoRII CCWGG 3 cut(s) 796, 827, 895
EcoT14I CCWWGG 2 cut(s) 182, 1001
EcoT22I ATGCAT 1 cut(s) 460
EcoT38I GRGCYC 1 cut(s) 675
ErhI CCWWGG 2 cut(s) 182, 1001
FaeI CATG 4 cut(s) 74, 158, 573, 730
FaqI GGGAC 2 cut(s) 106, 521
FatI CATG 4 cut(s) 70, 154, 569, 726
FauI CCCGC 1 cut(s) 478
FbaI TGATCA 1 cut(s) 811
Fnu4HI GCNGC 2 cut(s) 616, 978
FokI GGATG 3 cut(s) 318, 390, 413
FriOI GRGCYC 1 cut(s) 675
Fsp4HI GCNGC 2 cut(s) 616, 978
FspBI CTAG 3 cut(s) 75, 513, 696
GlaI GCGC 1 cut(s) 484
GluI GCNGC 2 cut(s) 616, 978
GsuI CTGGAG 2 cut(s) 819, 1050
HaeIII GGCC 2 cut(s) 56, 433
HapII CCGG 1 cut(s) 44
HhaI GCGC 1 cut(s) 485
Hin1II CATG 4 cut(s) 74, 158, 573, 730
Hin6I GCGC 1 cut(s) 483
HinP1I GCGC 1 cut(s) 483
HincII GTYRAC 1 cut(s) 751
HindII GTYRAC 1 cut(s) 751
HindIII AAGCTT 2 cut(s) 246, 734
HinfI GANTC 6 cut(s) 22, 151, 509, 767, 804, 1025
HpaII CCGG 1 cut(s) 44
HphI GGTGA 1 cut(s) 1061
Hpy166II GTNNAC 2 cut(s) 383, 751
Hpy188I TCNGA 4 cut(s) 68, 269, 341, 1061
Hpy188III TCNNGA 3 cut(s) 140, 155, 1029
Hpy8I GTNNAC 2 cut(s) 383, 751
HpyAV CCTTC 2 cut(s) 343, 544
HpyCH4III ACNGT 5 cut(s) 97, 179, 544, 714, 985
HpyCH4V TGCA 7 cut(s) 107, 194, 286, 458, 785, 919, 977
HpyF10VI GCNNNNNNNGC 1 cut(s) 53
HpyF3I CTNAG 1 cut(s) 873
Hsp92II CATG 4 cut(s) 74, 158, 573, 730
HspAI GCGC 1 cut(s) 483
KroI GCCGGC 1 cut(s) 43
KroNI GCCGGC 1 cut(s) 45
Ksp22I TGATCA 1 cut(s) 811
Kzo9I GATC 6 cut(s) 188, 264, 289, 811, 904, 931
LmnI GCTCC 2 cut(s) 704, 1034
Lsp1109I GCAGC 1 cut(s) 989
LweI GCATC 3 cut(s) 203, 886, 906
MaeI CTAG 3 cut(s) 75, 513, 696
MaeIII GTNAC 3 cut(s) 439, 868, 938
MalI GATC 6 cut(s) 190, 266, 291, 813, 906, 933
MboI GATC 6 cut(s) 188, 264, 289, 811, 904, 931
MboII GAAGA 3 cut(s) 218, 323, 827
MfeI CAATTG 1 cut(s) 786
MflI RGATCY 1 cut(s) 188
MhlI GDGCHC 1 cut(s) 675
MlsI TGGCCA 1 cut(s) 56
MluCI AATT 9 cut(s) 33, 121, 205, 240, 270, 535, 565, 744, 786
MluNI TGGCCA 1 cut(s) 56
MlyI GAGTC 3 cut(s) 503, 761, 1034
MmeI TCCRAC 5 cut(s) 46, 478, 558, 682, 1000
MnlI CCTC 5 cut(s) 234, 255, 462, 794, 1025
Mox20I TGGCCA 1 cut(s) 56
Mph1103I ATGCAT 1 cut(s) 460
MroNI GCCGGC 1 cut(s) 43
MscI TGGCCA 1 cut(s) 56
MseI TTAA 4 cut(s) 203, 408, 534, 738
Msp20I TGGCCA 1 cut(s) 56
MspA1I CMGCKG 1 cut(s) 1047
MspI CCGG 1 cut(s) 44
MspR9I CCNGG 3 cut(s) 798, 829, 897
MunI CAATTG 1 cut(s) 786
Mva1269I GAATGC 1 cut(s) 460
MvaI CCWGG 3 cut(s) 798, 829, 897
MvnI CGCG 1 cut(s) 485
MwoI GCNNNNNNNGC 1 cut(s) 53
NaeI GCCGGC 1 cut(s) 45
NdeII GATC 6 cut(s) 188, 264, 289, 811, 904, 931
NgoMIV GCCGGC 1 cut(s) 43
NheI GCTAGC 1 cut(s) 74
NlaIII CATG 4 cut(s) 74, 158, 573, 730
NlaIV GGNNCC 5 cut(s) 280, 434, 473, 894, 1036
NmuCI GTSAC 2 cut(s) 439, 868
NsiI ATGCAT 1 cut(s) 460
NspI RCATGY 1 cut(s) 74
NspV TTCGAA 1 cut(s) 548
PagI TCATGA 1 cut(s) 154
PctI GAATGC 1 cut(s) 460
PdiI GCCGGC 1 cut(s) 45
PfeI GAWTC 3 cut(s) 22, 151, 804
PkrI GCNGC 2 cut(s) 617, 979
PleI GAGTC 3 cut(s) 503, 761, 1033
PpsI GAGTC 3 cut(s) 503, 761, 1033
PshBI ATTAAT 1 cut(s) 534
Psp124BI GAGCTC 1 cut(s) 675
Psp6I CCWGG 3 cut(s) 796, 827, 895
PspGI CCWGG 3 cut(s) 796, 827, 895
PspN4I GGNNCC 5 cut(s) 280, 434, 473, 894, 1036
PspPI GGNCC 4 cut(s) 432, 893, 946, 998
PsuI RGATCY 1 cut(s) 188
RsaI GTAC 2 cut(s) 761, 961
RsaNI GTAC 2 cut(s) 760, 960
SacI GAGCTC 1 cut(s) 675
SaqAI TTAA 4 cut(s) 203, 408, 534, 738
SatI GCNGC 2 cut(s) 616, 978
Sau3AI GATC 6 cut(s) 188, 264, 289, 811, 904, 931
Sau96I GGNCC 4 cut(s) 432, 893, 946, 998
SchI GAGTC 3 cut(s) 503, 761, 1034
ScrFI CCNGG 3 cut(s) 798, 829, 897
SduI GDGCHC 1 cut(s) 675
SfaNI GCATC 3 cut(s) 203, 886, 906
SfcI CTRYAG 1 cut(s) 372
SfuI TTCGAA 1 cut(s) 548
SinI GGWCC 3 cut(s) 893, 946, 998
Sse9I AATT 9 cut(s) 33, 121, 205, 240, 270, 535, 565, 744, 786
SsiI CCGC 3 cut(s) 485, 616, 1047
SspMI CTAG 3 cut(s) 75, 513, 696
SstI GAGCTC 1 cut(s) 675
StyD4I CCNGG 3 cut(s) 796, 827, 895
StyI CCWWGG 2 cut(s) 182, 1001
TaaI ACNGT 5 cut(s) 97, 179, 544, 714, 985
TaqI TCGA 2 cut(s) 548, 966
TasI AATT 9 cut(s) 33, 121, 205, 240, 270, 535, 565, 744, 786
TatI WGTACW 1 cut(s) 759
TauI GCSGC 1 cut(s) 618
TfiI GAWTC 3 cut(s) 22, 151, 804
Tru1I TTAA 4 cut(s) 203, 408, 534, 738
Tru9I TTAA 4 cut(s) 203, 408, 534, 738
TscAI CASTG 2 cut(s) 182, 990
TseFI GTSAC 2 cut(s) 439, 868
TseI GCWGC 1 cut(s) 977
Tsp45I GTSAC 2 cut(s) 439, 868
TspDTI ATGAA 5 cut(s) 171, 558, 605, 615, 746
TspGWI ACGGA 1 cut(s) 1011
TspRI CASTG 2 cut(s) 182, 990
VpaK11BI GGWCC 3 cut(s) 893, 946, 998
VspI ATTAAT 1 cut(s) 534
XapI RAATTY 2 cut(s) 205, 565
XceI RCATGY 1 cut(s) 74
XspI CTAG 3 cut(s) 75, 513, 696
Zsp2I ATGCAT 1 cut(s) 460
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.