Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0004478

Physical Location & Seq

Genomic Coordinates Reverse (-)

57829252 .. 57830048

Gene Structure 797 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0448100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 435 bp

ATGATTCCTCTGCTAGGAAGCTGCATTTCCCATTCGAGAAGCAACTGGTACGCTGCTGCCTGCTGCAACCTGCTGGCCTCCTCTAATGGTTTGGTGTTTGTAGCATTGGATGAGAGGTTTAACATCTGGAACCCGTCGACTCGATTCTTCATGATCAAGAAACTGCCTGACATTGGTGCTGGGTATTTGTCGGCCACTGACAACTACAAGGTTCTGGCAGGCTACATGCTTAGAGGTCAAGAGGAGGGGGAGGATAATGGCGAGGTGGTCCACAATTTCTCATTGAGAGCACACATTTGGAGAATGATTGACATTCATAACCTCGGGAGCGATGTTTTTCCTACTCTTCATGGGACTCTTTCGAATGAGGCACTTCATTGGCTACATGGATACAGCAATTCCAGATATGATCTGGTTGCTTTTGATTTTGGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00531 ko01100 ko05205 map00531 map01100 map05205

Pfam Domains

Protein Families

Glyco_hydro_79n

Protein Analysis

144

Amino Acids

16.18

Weight (kDa)

5.91

Isoelectric Point (pI)

38.69

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004478)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G07830
fragaria_vesca	FvH4_5g14320 FvH4_5g14320 FvH4_5g14320 FvH4_5g14320
malus_domestica	MD06G1199600.v1.1 MD14G1208600.v1.1
prunus_persica	Prupe.5G200500_v2.0.a1 Prupe.5G200500_v2.0.a1 Prupe.5G200800_v2.0.a1 Prupe.5G200800_v2.0.a1 Prupe.5G200800_v2.0.a1 Prupe.5G200800_v2.0.a1
pyrus_communis	pycom06g17640 pycom14g17220
rosa_chinensis	RchiOBHm_Chr7g0182491 RchiOBHm_Chr7g0182571
rosa_laevigata	RLG00000005121
rosa_multiflora	Rmu_sc0005811.1_g000005
rosa_roxburghii	Rroxscaffold_3G00271180 Rroxscaffold_3G00271230
rosa_rugosa	Rorug06G0448100 Rorug06G0448200 Rorug06G0448300
rosa_samantha	Rh7AG052000 Rh7BG051100 Rh7CG052600 Rh7CG053100 Rh7DG050300 Rh7DG051100
rosa_wichuraiana	Rw7G004180 Rw7G004210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	78
AccI	GTMKAC	1 cut(s)	137
AcoI	YGGCCR	1 cut(s)	192
AfaI	GTAC	1 cut(s)	50
AfiI	CCNNNNNNNGG	2 cut(s)	14, 173
AluBI	AGCT	1 cut(s)	21
AluI	AGCT	1 cut(s)	21
Alw21I	GWGCWC	1 cut(s)	292
Ama87I	CYCGRG	1 cut(s)	323
AoxI	GGCC	2 cut(s)	75, 192
ApeKI	GCWGC	4 cut(s)	21, 53, 56, 63
AspS9I	GGNCC	1 cut(s)	268
AsuII	TTCGAA	1 cut(s)	362
AvaI	CYCGRG	1 cut(s)	323
AvaII	GGWCC	1 cut(s)	268
Bbv12I	GWGCWC	1 cut(s)	292
BbvI	GCAGC	4 cut(s)	8, 40, 43, 50
BciVI	GTATCC	1 cut(s)	383
BclI	TGATCA	1 cut(s)	153
BfaI	CTAG	1 cut(s)	14
BfuAI	ACCTGC	1 cut(s)	78
BfuI	GTATCC	1 cut(s)	383
BisI	GCNGC	4 cut(s)	22, 54, 57, 64
BlsI	GCNGC	4 cut(s)	23, 55, 58, 65
Bme18I	GGWCC	1 cut(s)	268
BmeT110I	CYCGRG	1 cut(s)	323
BmgT120I	GGNCC	1 cut(s)	268
BmiI	GGNNCC	1 cut(s)	131
Bpu14I	TTCGAA	1 cut(s)	362
BsaJI	CCNNGG	1 cut(s)	322
Bsc4I	CCNNNNNNNGG	2 cut(s)	14, 173
Bse1I	ACTGG	1 cut(s)	50
BseDI	CCNNGG	1 cut(s)	322
BseGI	GGATG	1 cut(s)	115
BseLI	CCNNNNNNNGG	2 cut(s)	14, 173
BseNI	ACTGG	1 cut(s)	50
BseRI	GAGGAG	2 cut(s)	70, 257
BseXI	GCAGC	4 cut(s)	8, 40, 43, 50
BseYI	CCCAGC	1 cut(s)	179
BshFI	GGCC	2 cut(s)	77, 194
BsiHKAI	GWGCWC	1 cut(s)	292
BsiHKCI	CYCGRG	1 cut(s)	323
BslFI	GGGAC	1 cut(s)	367
BslI	CCNNNNNNNGG	2 cut(s)	14, 173
BsmFI	GGGAC	1 cut(s)	367
BsnI	GGCC	2 cut(s)	77, 194
BsoBI	CYCGRG	1 cut(s)	323
Bsp119I	TTCGAA	1 cut(s)	362
Bsp1286I	GDGCHC	1 cut(s)	292
Bsp143I	GATC	2 cut(s)	153, 409
BspANI	GGCC	2 cut(s)	77, 194
BspHI	TCATGA	1 cut(s)	150
BspLI	GGNNCC	1 cut(s)	131
BspMI	ACCTGC	1 cut(s)	78
BspT104I	TTCGAA	1 cut(s)	362
BsrI	ACTGG	1 cut(s)	50
BssECI	CCNNGG	1 cut(s)	322
BssMI	GATC	2 cut(s)	153, 409
Bst6I	CTCTTC	1 cut(s)	351
BstBI	TTCGAA	1 cut(s)	362
BstC8I	GCNNGC	3 cut(s)	61, 75, 220
BstDEI	CTNAG	1 cut(s)	230
BstENI	CCTNNNNNAGG	1 cut(s)	12
BstF5I	GGATG	1 cut(s)	115
BstKTI	GATC	2 cut(s)	156, 412
BstMBI	GATC	2 cut(s)	153, 409
BstNSI	RCATGY	1 cut(s)	229
BstV1I	GCAGC	4 cut(s)	8, 40, 43, 50
BsuI	GTATCC	1 cut(s)	383
BsuRI	GGCC	2 cut(s)	77, 194
BtgZI	GCGATG	1 cut(s)	345
BtsCI	GGATG	1 cut(s)	115
BtsIMutI	CAGTG	1 cut(s)	195
BveI	ACCTGC	1 cut(s)	78
Cac8I	GCNNGC	3 cut(s)	61, 75, 220
CciI	TCATGA	1 cut(s)	150
Cfr13I	GGNCC	1 cut(s)	268
Csp6I	GTAC	1 cut(s)	49
CviAII	CATG	4 cut(s)	151, 226, 350, 386
CviJI	RGCY	6 cut(s)	21, 77, 194, 222, 382, 432
CviKI_1	RGCY	6 cut(s)	21, 77, 194, 222, 382, 432
CviQI	GTAC	1 cut(s)	49
DdeI	CTNAG	1 cut(s)	230
DpnI	GATC	2 cut(s)	155, 411
DpnII	GATC	2 cut(s)	153, 409
EaeI	YGGCCR	1 cut(s)	192
Eam1104I	CTCTTC	1 cut(s)	351
EarI	CTCTTC	1 cut(s)	351
Eco47I	GGWCC	1 cut(s)	268
Eco88I	CYCGRG	1 cut(s)	323
EcoNI	CCTNNNNNAGG	1 cut(s)	12
FaeI	CATG	4 cut(s)	154, 229, 353, 389
FaiI	YATR	6 cut(s)	152, 227, 318, 351, 387, 408
FaqI	GGGAC	1 cut(s)	367
FatI	CATG	4 cut(s)	150, 225, 349, 385
FbaI	TGATCA	1 cut(s)	153
FblI	GTMKAC	1 cut(s)	137
Fnu4HI	GCNGC	4 cut(s)	22, 54, 57, 64
FokI	GGATG	1 cut(s)	122
Fsp4HI	GCNGC	4 cut(s)	22, 54, 57, 64
FspBI	CTAG	1 cut(s)	14
GluI	GCNGC	4 cut(s)	22, 54, 57, 64
GsaI	CCCAGC	1 cut(s)	183
HaeIII	GGCC	2 cut(s)	77, 194
Hin1II	CATG	4 cut(s)	154, 229, 353, 389
HincII	GTYRAC	1 cut(s)	138
HindII	GTYRAC	1 cut(s)	138
HinfI	GANTC	4 cut(s)	4, 139, 144, 355
Hpy166II	GTNNAC	2 cut(s)	138, 271
Hpy188III	TCNNGA	7 cut(s)	36, 127, 151, 157, 239, 325, 402
Hpy8I	GTNNAC	2 cut(s)	138, 271
Hpy99I	CGWCG	1 cut(s)	139
HpyCH4V	TGCA	2 cut(s)	24, 66
HpyF3I	CTNAG	1 cut(s)	230
Hsp92II	CATG	4 cut(s)	154, 229, 353, 389
Ksp22I	TGATCA	1 cut(s)	153
Kzo9I	GATC	2 cut(s)	153, 409
LmnI	GCTCC	1 cut(s)	327
Lsp1109I	GCAGC	4 cut(s)	8, 40, 43, 50
MaeI	CTAG	1 cut(s)	14
MalI	GATC	2 cut(s)	155, 411
MboI	GATC	2 cut(s)	153, 409
MboII	GAAGA	2 cut(s)	139, 338
MhlI	GDGCHC	1 cut(s)	292
MluCI	AATT	2 cut(s)	274, 397
MlyI	GAGTC	2 cut(s)	133, 349
MseI	TTAA	1 cut(s)	120
NdeII	GATC	2 cut(s)	153, 409
NlaIII	CATG	4 cut(s)	154, 229, 353, 389
NlaIV	GGNNCC	1 cut(s)	131
NspI	RCATGY	1 cut(s)	229
NspV	TTCGAA	1 cut(s)	362
PagI	TCATGA	1 cut(s)	150
PfeI	GAWTC	2 cut(s)	4, 144
PkrI	GCNGC	4 cut(s)	23, 55, 58, 65
PleI	GAGTC	2 cut(s)	133, 349
PpsI	GAGTC	2 cut(s)	133, 349
PspFI	CCCAGC	1 cut(s)	179
PspN4I	GGNNCC	1 cut(s)	131
PspPI	GGNCC	1 cut(s)	268
RsaI	GTAC	1 cut(s)	50
RsaNI	GTAC	1 cut(s)	49
SalI	GTCGAC	1 cut(s)	136
SaqAI	TTAA	1 cut(s)	120
SatI	GCNGC	4 cut(s)	22, 54, 57, 64
Sau3AI	GATC	2 cut(s)	153, 409
Sau96I	GGNCC	1 cut(s)	268
SchI	GAGTC	2 cut(s)	133, 349
SduI	GDGCHC	1 cut(s)	292
SetI	ASST	7 cut(s)	23, 72, 119, 213, 238, 267, 324
SfuI	TTCGAA	1 cut(s)	362
SinI	GGWCC	1 cut(s)	268
Sse9I	AATT	2 cut(s)	274, 397
SspMI	CTAG	1 cut(s)	14
TaqI	TCGA	4 cut(s)	35, 137, 142, 362
TasI	AATT	2 cut(s)	274, 397
TfiI	GAWTC	2 cut(s)	4, 144
Tru1I	TTAA	1 cut(s)	120
Tru9I	TTAA	1 cut(s)	120
TscAI	CASTG	1 cut(s)	202
TseI	GCWGC	4 cut(s)	21, 53, 56, 63
TspDTI	ATGAA	4 cut(s)	139, 305, 338, 365
TspRI	CASTG	1 cut(s)	202
VpaK11BI	GGWCC	1 cut(s)	268
XagI	CCTNNNNNAGG	1 cut(s)	12
XceI	RCATGY	1 cut(s)	229
XcmI	CCANNNNNNNNNTGG	1 cut(s)	409
XmiI	GTMKAC	1 cut(s)	137
XspI	CTAG	1 cut(s)	14

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.